mRNA_E-siliculosus-1a_F_contig1069.487.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1069.487.1
Unique NamemRNA_E-siliculosus-1a_F_contig1069.487.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1069contigE-siliculosus-1a_F_contig1069:9180..10073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size894
Model size894
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.0488977-CDS-E-siliculosus-1a_F_contig1069:9179..100731622927570.0488977-CDS-E-siliculosus-1a_F_contig1069:9179..10073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 9180..10073 +
1696318590.6273932-CDS-E-siliculosus-1a_F_contig1069:9179..100731696318590.6273932-CDS-E-siliculosus-1a_F_contig1069:9179..10073Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 9180..10073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1069.487.1prot_E-siliculosus-1a_F_contig1069.487.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1069 9180..10073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1069.487.1

>prot_E-siliculosus-1a_F_contig1069.487.1 ID=prot_E-siliculosus-1a_F_contig1069.487.1|Name=mRNA_E-siliculosus-1a_F_contig1069.487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=298bp
SRWTLAQITVRREVGHSIPSTGWEKCDPLPLFPNDNSCRDAGHATPSMGW
LNAYPNDSCFREAGHTTPAMGWSKQPANDRSCREAGHTTPSIGWQKQFEK
KSSCREAGHTTPAIGWLKKGPKHSCCREAGHTTPAIGWLKAAPNDKSCRE
AGHTTPVTGWLNNSPNDSSCREGGHATPAMGWSKSLSNHSCCREAGHITP
AIGWLKKTPKDSCCSEAGHTSPAMGWLKSSPNESCCREAGHATPAMGWLK
SSPNDNSFSRGGQVTDSRLAESTAPRSRRTFDHPHSSIVELSNRTSN*
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mRNA from alignment at E-siliculosus-1a_F_contig1069:9180..10073+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1069.487.1 ID=mRNA_E-siliculosus-1a_F_contig1069.487.1|Name=mRNA_E-siliculosus-1a_F_contig1069.487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:9180..10073+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCAGGTGGACTCTCGCACAAATCACAGTGCGAAGGGAAGTCGGCCATTC
GATCCCGTCAACAGGCTGGGAAAAGTGTGACCCATTGCCGTTGTTCCCGA
ATGACAACTCCTGCAGAGACGCTGGCCACGCAACTCCGTCGATGGGCTGG
TTGAATGCATATCCGAACGATAGCTGCTTCAGAGAGGCCGGCCACACAAC
TCCGGCAATGGGCTGGTCAAAGCAGCCTGCAAACGACAGGTCCTGTAGGG
AGGCCGGCCACACAACTCCTTCGATAGGTTGGCAGAAGCAATTTGAAAAA
AAAAGCAGCTGTAGGGAGGCCGGCCACACAACTCCGGCGATAGGCTGGTT
GAAGAAAGGTCCAAAACACAGCTGCTGTAGGGAGGCCGGCCACACAACTC
CGGCGATAGGCTGGTTGAAGGCAGCTCCAAACGACAAAAGCTGCAGAGAG
GCCGGCCACACGACTCCAGTGACAGGCTGGTTAAACAATTCTCCGAACGA
TAGCTCCTGCAGAGAGGGCGGCCACGCAACTCCGGCAATGGGCTGGTCGA
AGTCGTTGTCAAACCACAGCTGCTGCAGAGAGGCCGGCCACATAACTCCG
GCGATAGGCTGGTTGAAGAAAACTCCGAAAGATAGCTGCTGTAGCGAGGC
CGGCCACACAAGTCCTGCGATGGGCTGGTTGAAGTCATCTCCAAACGAGA
GCTGCTGCAGAGAGGCCGGCCACGCAACTCCGGCAATGGGCTGGTTGAAG
TCATCTCCAAACGACAACAGTTTCAGCCGCGGCGGCCAAGTCACCGACTC
AAGGCTAGCTGAATCCACAGCCCCCCGCAGTCGTAGAACGTTCGACCATC
CCCACAGCTCCATCGTGGAACTCTCCAACAGGACCTCTAATTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:9180..10073+

>mRNA_E-siliculosus-1a_F_contig1069.487.1 ID=mRNA_E-siliculosus-1a_F_contig1069.487.1|Name=mRNA_E-siliculosus-1a_F_contig1069.487.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1788bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:9180..10073+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
AGCAGGTGGACTCTCGCACAAATCACAGTGCGAAGGGAAGTCGGCCATTC
GATCCCGTCAACAGGCTGGGAAAAGTGTGACCCATTGCCGTTGTTCCCGA
ATGACAACTCCTGCAGAGACGCTGGCCACGCAACTCCGTCGATGGGCTGG
TTGAATGCATATCCGAACGATAGCTGCTTCAGAGAGGCCGGCCACACAAC
TCCGGCAATGGGCTGGTCAAAGCAGCCTGCAAACGACAGGTCCTGTAGGG
AGGCCGGCCACACAACTCCTTCGATAGGTTGGCAGAAGCAATTTGAAAAA
AAAAGCAGCTGTAGGGAGGCCGGCCACACAACTCCGGCGATAGGCTGGTT
GAAGAAAGGTCCAAAACACAGCTGCTGTAGGGAGGCCGGCCACACAACTC
CGGCGATAGGCTGGTTGAAGGCAGCTCCAAACGACAAAAGCTGCAGAGAG
GCCGGCCACACGACTCCAGTGACAGGCTGGTTAAACAATTCTCCGAACGA
TAGCTCCTGCAGAGAGGGCGGCCACGCAACTCCGGCAATGGGCTGGTCGA
AGTCGTTGTCAAACCACAGCTGCTGCAGAGAGGCCGGCCACATAACTCCG
GCGATAGGCTGGTTGAAGAAAACTCCGAAAGATAGCTGCTGTAGCGAGGC
CGGCCACACAAGTCCTGCGATGGGCTGGTTGAAGTCATCTCCAAACGAGA
GCTGCTGCAGAGAGGCCGGCCACGCAACTCCGGCAATGGGCTGGTTGAAG
TCATCTCCAAACGACAACAGTTTCAGCCGCGGCGGCCAAGTCACCGACTC
AAGGCTAGCTGAATCCACAGCCCCCCGCAGTCGTAGAACGTTCGACCATC
CCCACAGCTCCATCGTGGAACTCTCCAACAGGACCTCTAATTGAAGCAGG
TGGACTCTCGCACAAATCACAGTGCGAAGGGAAGTCGGCCATTCGATCCC
GTCAACAGGCTGGGAAAAGTGTGACCCATTGCCGTTGTTCCCGAATGACA
ACTCCTGCAGAGACGCTGGCCACGCAACTCCGTCGATGGGCTGGTTGAAT
GCATATCCGAACGATAGCTGCTTCAGAGAGGCCGGCCACACAACTCCGGC
AATGGGCTGGTCAAAGCAGCCTGCAAACGACAGGTCCTGTAGGGAGGCCG
GCCACACAACTCCTTCGATAGGTTGGCAGAAGCAATTTGAAAAAAAAAGC
AGCTGTAGGGAGGCCGGCCACACAACTCCGGCGATAGGCTGGTTGAAGAA
AGGTCCAAAACACAGCTGCTGTAGGGAGGCCGGCCACACAACTCCGGCGA
TAGGCTGGTTGAAGGCAGCTCCAAACGACAAAAGCTGCAGAGAGGCCGGC
CACACGACTCCAGTGACAGGCTGGTTAAACAATTCTCCGAACGATAGCTC
CTGCAGAGAGGGCGGCCACGCAACTCCGGCAATGGGCTGGTCGAAGTCGT
TGTCAAACCACAGCTGCTGCAGAGAGGCCGGCCACATAACTCCGGCGATA
GGCTGGTTGAAGAAAACTCCGAAAGATAGCTGCTGTAGCGAGGCCGGCCA
CACAAGTCCTGCGATGGGCTGGTTGAAGTCATCTCCAAACGAGAGCTGCT
GCAGAGAGGCCGGCCACGCAACTCCGGCAATGGGCTGGTTGAAGTCATCT
CCAAACGACAACAGTTTCAGCCGCGGCGGCCAAGTCACCGACTCAAGGCT
AGCTGAATCCACAGCCCCCCGCAGTCGTAGAACGTTCGACCATCCCCACA
GCTCCATCGTGGAACTCTCCAACAGGACCTCTAATTGA
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