mRNA_E-siliculosus-1a_F_contig1069.489.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1069.489.1
Unique NamemRNA_E-siliculosus-1a_F_contig1069.489.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1069contigE-siliculosus-1a_F_contig1069:16336..17335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size648
Model size648
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927569.9724357-CDS-E-siliculosus-1a_F_contig1069:16335..165121622927569.9724357-CDS-E-siliculosus-1a_F_contig1069:16335..16512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 16336..16512 -
1696318590.6004372-CDS-E-siliculosus-1a_F_contig1069:16335..165121696318590.6004372-CDS-E-siliculosus-1a_F_contig1069:16335..16512Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 16336..16512 -
1622927569.9830377-CDS-E-siliculosus-1a_F_contig1069:16864..173351622927569.9830377-CDS-E-siliculosus-1a_F_contig1069:16864..17335Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 16865..17335 -
1696318590.6081054-CDS-E-siliculosus-1a_F_contig1069:16864..173351696318590.6081054-CDS-E-siliculosus-1a_F_contig1069:16864..17335Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1069 16865..17335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1069.489.1prot_E-siliculosus-1a_F_contig1069.489.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1069 16336..17335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1069.489.1

>prot_E-siliculosus-1a_F_contig1069.489.1 ID=prot_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=216bp
VGGDDIFEAQTGMGGGMERSALLLGSPSLSWPQQQQHQHQQPALDPLRTE
QQLLADSPVLAGVPGLGLDQGQRLDGIGQSRDGGYGGSFSTGMTATFGGM
DVMSAGGVATLGGVGSDGGVSVPPQQVLVGRVGQGEAAGSQQPSQPQAAP
LFFQQQHLQHLDFLTDAQQQQQQQQLQQQPRLATQVSTPEFRNMSVTVPF
DGSIDGSEGGGGGSGS
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mRNA from alignment at E-siliculosus-1a_F_contig1069:16336..17335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1069.489.1 ID=mRNA_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1000bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:16336..17335- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGGCGGTGACGACATCTTCGAAGCGCAGACGGGAATGGGCGGCGGCAT
GGAGCGATCCGCGTTGTTGCTCGGCTCGCCGTCCTTGTCGTGGCCTCAAC
AACAGCAACACCAACACCAACAGCCTGCACTAGACCCGCTTCGAACAGAG
CAGCAGCTTCTTGCGGATTCTCCCGTATTGGCGGGCGTGCCTGGGCTAGG
GCTAGACCAAGGCCAGCGCCTGGACGGCATCGGGCAGAGCAGGGACGGGG
GTTACGGCGGTTCGTTTTCGACGGGGATGACAGCAACGTTTGGTGGGATG
GATGTGATGAGCGCGGGCGGGGTGGCGACGTTGGGTGGAGTTGGTAGCGA
TGGAGGAGTTTCCGTGCCCCCGCAACAGGTGCTTGTGGGGCGTGTGGGTC
AAGGGGAAGCGGCCGGGAGTCAGCAGCCGTCGCAGCCGCAGGCAGCGCCC
CTGTTTTTTCAGCAACAGCACGTGAGGATTCGGTTGTTGAGTGATACGGA
TATGTAGTCTTATACCACCCAATTTGGTTCTCGACTCACATAGGTTTAAG
CTGTTCGACTCTTTTCATGGCGGTGCAACACGTTGTTGCCCCACTCCCTT
GGGAGTATCGCCTACCTCATCGGCGAAGCCCCGTTCCAGTGACATTCTGG
GGATGCGATGCAAGGGTCCAGCAACGACACACGACAGCCATAGTGTTACT
TCTCCTCCATCTGTTGTTGTGGTTGCATCGTCGTCTTTTGCTCGGTTTCC
CGTGCAAGCTTTTTGCGATTCTGACTACGCACTATTAATTGTCTTCTGTC
TGCCCTTGTCTCCTTTCGCGCAGCTTCAGCATCTCGACTTCTTGACGGAT
GCTCAGCAGCAACAGCAGCAGCAGCAACTGCAGCAACAACCCCGCCTAGC
AACGCAGGTGTCAACACCGGAGTTCCGAAACATGAGCGTAACGGTTCCAT
TCGACGGCAGCATCGACGGTAGCGAAGGTGGCGGCGGCGGCAGCGGCAGC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1069:16336..17335-

>mRNA_E-siliculosus-1a_F_contig1069.489.1 ID=mRNA_E-siliculosus-1a_F_contig1069.489.1|Name=mRNA_E-siliculosus-1a_F_contig1069.489.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1296bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1069:16336..17335- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTTGGCGGTGACGACATCTTCGAAGCGCAGACGGGAATGGGCGGCGGCAT
GGAGCGATCCGCGTTGTTGCTCGGCTCGCCGTCCTTGTCGTGGCCTCAAC
AACAGCAACACCAACACCAACAGCCTGCACTAGACCCGCTTCGAACAGAG
CAGCAGCTTCTTGCGGATTCTCCCGTATTGGCGGGCGTGCCTGGGCTAGG
GCTAGACCAAGGCCAGCGCCTGGACGGCATCGGGCAGAGCAGGGACGGGG
GTTACGGCGGTTCGTTTTCGACGGGGATGACAGCAACGTTTGGTGGGATG
GATGTGATGAGCGCGGGCGGGGTGGCGACGTTGGGTGGAGTTGGTAGCGA
TGGAGGAGTTTCCGTGCCCCCGCAACAGGTGCTTGTGGGGCGTGTGGGTC
AAGGGGAAGCGGCCGGGAGTCAGCAGCCGTCGCAGCCGCAGGCAGCGCCC
CTGTTTTTTCAGCAACAGCACGTTGGCGGTGACGACATCTTCGAAGCGCA
GACGGGAATGGGCGGCGGCATGGAGCGATCCGCGTTGTTGCTCGGCTCGC
CGTCCTTGTCGTGGCCTCAACAACAGCAACACCAACACCAACAGCCTGCA
CTAGACCCGCTTCGAACAGAGCAGCAGCTTCTTGCGGATTCTCCCGTATT
GGCGGGCGTGCCTGGGCTAGGGCTAGACCAAGGCCAGCGCCTGGACGGCA
TCGGGCAGAGCAGGGACGGGGGTTACGGCGGTTCGTTTTCGACGGGGATG
ACAGCAACGTTTGGTGGGATGGATGTGATGAGCGCGGGCGGGGTGGCGAC
GTTGGGTGGAGTTGGTAGCGATGGAGGAGTTTCCGTGCCCCCGCAACAGG
TGCTTGTGGGGCGTGTGGGTCAAGGGGAAGCGGCCGGGAGTCAGCAGCCG
TCGCAGCCGCAGGCAGCGCCCCTGTTTTTTCAGCAACAGCACCTTCAGCA
TCTCGACTTCTTGACGGATGCTCAGCAGCAACAGCAGCAGCAGCAACTGC
AGCAACAACCCCGCCTAGCAACGCAGGTGTCAACACCGGAGTTCCGAAAC
ATGAGCGTAACGGTTCCATTCGACGGCAGCATCGACGGTAGCGAAGGTGG
CGGCGGCGGCAGCGGCAGCCTTCAGCATCTCGACTTCTTGACGGATGCTC
AGCAGCAACAGCAGCAGCAGCAACTGCAGCAACAACCCCGCCTAGCAACG
CAGGTGTCAACACCGGAGTTCCGAAACATGAGCGTAACGGTTCCATTCGA
CGGCAGCATCGACGGTAGCGAAGGTGGCGGCGGCGGCAGCGGCAGC
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