mRNA_E-siliculosus-1a_F_contig1067.477.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1067.477.1
Unique NamemRNA_E-siliculosus-1a_F_contig1067.477.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1067.477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1067contigE-siliculosus-1a_F_contig1067:15170..16117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size450
Model size450
Exons2
Ec32 orthologEc-01_005410.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.5749757-CDS-E-siliculosus-1a_F_contig1067:15169..155021622927568.5749757-CDS-E-siliculosus-1a_F_contig1067:15169..15502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1067 15170..15502 -
1696318589.7369561-CDS-E-siliculosus-1a_F_contig1067:15169..155021696318589.7369561-CDS-E-siliculosus-1a_F_contig1067:15169..15502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1067 15170..15502 -
1622927568.590932-CDS-E-siliculosus-1a_F_contig1067:16000..161171622927568.590932-CDS-E-siliculosus-1a_F_contig1067:16000..16117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1067 16001..16117 -
1696318589.7472954-CDS-E-siliculosus-1a_F_contig1067:16000..161171696318589.7472954-CDS-E-siliculosus-1a_F_contig1067:16000..16117Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1067 16001..16117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1067.477.1prot_E-siliculosus-1a_F_contig1067.477.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1067 15170..16117 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1067.477.1

>prot_E-siliculosus-1a_F_contig1067.477.1 ID=prot_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=150bp
MGSAWSRKQATIHSSFQAAPLAVASWDLQHVKILHNRFRDDGYEFGIDRV
SLRDLISSALPLARGVTGDLWEIYVEHEQEMLYPLELFAAVALQCHGLSR
CGVSTIYSCPVFLCKNPSYFHAHFGPCRPEGRRLDRCISSKVSPGIRVYF
back to top

mRNA from alignment at E-siliculosus-1a_F_contig1067:15170..16117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1067.477.1 ID=mRNA_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=948bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:15170..16117- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACCATCCATAGTTCCTTCCA
GGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCTACAGCACGTCAAGATTC
TCCACAATCGATTCAGGGTAAGGAGCAAAGCAGTATGCAACCTGTTGACA
CAGCCAAGCAGTTCACAAAGTGGATAACACACCGTGCCTACAAGAAGGCA
AGAAAACAGCGATTTGTGCACAGTGATGAACTCTGTGCGTGAACATTATG
TTCGACAACACTTCAGTGCAGTAGGATGTACGAGCTTCGATGTCGTGCGA
ATTACGCATGGTCAGTACTTGTGGTCAGCATCACATCAAACACAATGGAT
TAGCCGGTGACGATGAATTGATGGTTACAGATGCAGATGCTCTCTGGTCG
AATGCCTGCATAGTACTGTGCCATGTAGTTGTTGCGCTTTGTTCGTGAGT
ATACTTGAGGAAAGGAAGGACGACTGAAACCTGCAGCGTGAATTCGGATC
GGATAGAACCTCGTCGGGTAGACTACGGTAGACTGCGAGCGACGGTTGAA
ATGGGTTACATGAATGAAGACCAACATAATATAACGCTACGGATGACAAT
GGCATGACACGGCAGGATGATGGGTACGAATTCGGCATAGACCGGGTGTC
GCTGCGAGATCTCATCAGCTCGGCGTTGCCACTCGCGCGAGGAGTGACGG
GTGACCTCTGGGAAATCTACGTAGAACACGAGCAGGAGATGCTCTACCCT
CTGGAACTGTTTGCCGCCGTTGCTCTCCAGTGCCATGGCTTGTCTAGGTG
TGGTGTATCTACAATTTACAGCTGCCCAGTTTTTTTGTGTAAGAATCCGA
GCTATTTCCATGCCCATTTTGGTCCCTGTCGCCCGGAAGGTCGGAGGCTC
GACCGGTGCATTTCCTCAAAAGTCTCCCCAGGGATCAGGGTTTATTTC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1067:15170..16117-

>mRNA_E-siliculosus-1a_F_contig1067.477.1 ID=mRNA_E-siliculosus-1a_F_contig1067.477.1|Name=mRNA_E-siliculosus-1a_F_contig1067.477.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1067:15170..16117- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACCATCCATAGTTCCTTCCA
GGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCTACAGCACGTCAAGATTC
TCCACAATCGATTCAGGATGGGGTCAGCTTGGTCAAGAAAGCAGGCAACC
ATCCATAGTTCCTTCCAGGCCGCGCCTCTTGCTGTGGCCTCGTGGGACCT
ACAGCACGTCAAGATTCTCCACAATCGATTCAGGGATGATGGGTACGAAT
TCGGCATAGACCGGGTGTCGCTGCGAGATCTCATCAGCTCGGCGTTGCCA
CTCGCGCGAGGAGTGACGGGTGACCTCTGGGAAATCTACGTAGAACACGA
GCAGGAGATGCTCTACCCTCTGGAACTGTTTGCCGCCGTTGCTCTCCAGT
GCCATGGCTTGTCTAGGTGTGGTGTATCTACAATTTACAGCTGCCCAGTT
TTTTTGTGTAAGAATCCGAGCTATTTCCATGCCCATTTTGGTCCCTGTCG
CCCGGAAGGTCGGAGGCTCGACCGGTGCATTTCCTCAAAAGTCTCCCCAG
GGATCAGGGTTTATTTCGATGATGGGTACGAATTCGGCATAGACCGGGTG
TCGCTGCGAGATCTCATCAGCTCGGCGTTGCCACTCGCGCGAGGAGTGAC
GGGTGACCTCTGGGAAATCTACGTAGAACACGAGCAGGAGATGCTCTACC
CTCTGGAACTGTTTGCCGCCGTTGCTCTCCAGTGCCATGGCTTGTCTAGG
TGTGGTGTATCTACAATTTACAGCTGCCCAGTTTTTTTGTGTAAGAATCC
GAGCTATTTCCATGCCCATTTTGGTCCCTGTCGCCCGGAAGGTCGGAGGC
TCGACCGGTGCATTTCCTCAAAAGTCTCCCCAGGGATCAGGGTTTATTTC
back to top