mRNA_E-siliculosus-1a_F_contig10665.474.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10665.474.1
Unique NamemRNA_E-siliculosus-1a_F_contig10665.474.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10665.474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10665contigE-siliculosus-1a_F_contig10665:450..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size879
Model size1636
Exons1
Ec32 orthologEc-18_001420.2
Ec32 ortholog descriptionDNA primase large subunit, eukaryotic/archaeal
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10665.474.1prot_E-siliculosus-1a_F_contig10665.474.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10665 603..1481 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.2486894-UTR-E-siliculosus-1a_F_contig10665:449..6021622927568.2486894-UTR-E-siliculosus-1a_F_contig10665:449..602Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10665 450..602 +
1696318589.5068202-UTR-E-siliculosus-1a_F_contig10665:449..6021696318589.5068202-UTR-E-siliculosus-1a_F_contig10665:449..602Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10665 450..602 +
1622927568.2751243-UTR-E-siliculosus-1a_F_contig10665:1481..20851622927568.2751243-UTR-E-siliculosus-1a_F_contig10665:1481..2085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10665 1482..2085 +
1696318589.5327742-UTR-E-siliculosus-1a_F_contig10665:1481..20851696318589.5327742-UTR-E-siliculosus-1a_F_contig10665:1481..2085Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig10665 1482..2085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927568.261728-CDS-E-siliculosus-1a_F_contig10665:602..14811622927568.261728-CDS-E-siliculosus-1a_F_contig10665:602..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10665 603..1481 +
1696318589.5219681-CDS-E-siliculosus-1a_F_contig10665:602..14811696318589.5219681-CDS-E-siliculosus-1a_F_contig10665:602..1481Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10665 603..1481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10665.474.1

>prot_E-siliculosus-1a_F_contig10665.474.1 ID=prot_E-siliculosus-1a_F_contig10665.474.1|Name=mRNA_E-siliculosus-1a_F_contig10665.474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=293bp
MRSWEQEVLDSFFDIARQQQREILKDVPVRDSAMNMRRERFCLALMKDTP
SAGDAWHLEIRSFRSGVCMYVLRITRGLGGSITYLVGLIALRTFSRRLTR
CPPYPNCFPFRSRYEYSLRHLCGLEGKRMAYRPQSCARIASVGWGGSGEG
GYGHGCPYHSRRKQAGGGGSGSGQSMAGGSNDTSLRGMLVAQSLPAADIE
DIIAPLESCRGAGAVGACRRHFSATHRWAAAGGGVWRTEGEGAQEASPNG
WLAASTRSNQQQPQQQQLLRQRPQQQQPVGKGEFLSQEGQGV*
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mRNA from alignment at E-siliculosus-1a_F_contig10665:450..2085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10665.474.1 ID=mRNA_E-siliculosus-1a_F_contig10665.474.1|Name=mRNA_E-siliculosus-1a_F_contig10665.474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1636bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10665:450..2085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGTAGATTAGGCGGAGAACATTCGCACTTGGGATTGACACGTAGGTCGTG
CAGCTTCGTTCTACTGATTCTGGAACCCGTTGGTAGTATGGGCGGCTCAG
CAATTCGCCCTCGCAAATAGCAGGCCGATGTAGCGCTAGCAACGTATGTG
GGAATGAGAAGTTGGGAACAGGAGGTGCTGGATAGTTTTTTCGACATCGC
ACGGCAACAACAACGGGAGATATTGAAGGACGTTCCTGTTAGGGATTCCG
CGATGAACATGCGCCGGGAGCGCTTTTGCTTGGCACTGATGAAAGACACA
CCAAGCGCGGGAGACGCTTGGCACTTAGAAATTCGCAGCTTTCGTTCTGG
TGTGTGCATGTATGTCCTGCGGATAACACGTGGTCTAGGAGGAAGTATCA
CCTATCTCGTGGGTTTGATTGCATTACGAACGTTTAGTAGGAGGCTGACG
CGTTGCCCGCCCTACCCAAACTGTTTTCCGTTCCGTTCCAGATACGAATA
CAGTCTTCGACACCTGTGTGGCCTGGAGGGAAAGCGTATGGCATACCGCC
CTCAGTCCTGCGCCCGAATCGCCTCCGTGGGATGGGGTGGCTCGGGCGAA
GGGGGCTACGGCCACGGCTGCCCGTACCACTCTCGCCGGAAACAGGCAGG
TGGCGGCGGCAGCGGTAGCGGGCAATCAATGGCCGGCGGCTCGAACGACA
CCAGCCTTCGAGGTATGCTAGTGGCCCAAAGTCTTCCTGCAGCAGACATT
GAAGACATCATCGCCCCTCTGGAAAGCTGTCGGGGGGCAGGGGCGGTGGG
GGCATGTCGAAGACACTTTTCGGCGACACACCGTTGGGCGGCGGCTGGCG
GAGGCGTGTGGAGGACGGAGGGCGAAGGGGCTCAGGAGGCAAGTCCAAAC
GGGTGGCTAGCGGCATCGACGAGGTCAAACCAACAGCAGCCGCAGCAGCA
GCAGCTGCTACGACAACGGCCACAGCAGCAGCAGCCGGTGGGAAAGGGAG
AGTTTCTATCGCAGGAGGGCCAGGGTGTTTAGGCTAATAGATTTACCTCA
CGGCCTTGTCAACGAGTTACCAACAAGTGGCTGGGAAGACCGCACGTCTT
GTTCGGTCTAAGCCGCAGGCACCTTGTCGGACGATGTAAAAAAGCACGAC
TTCCCCCCAGTTGTACAATAGTGGTGCAGCCTCGTAAGCTTGTGCAACGA
GCGGATGCTTCCCGCTGATACTATCGGTTCGTTGTGGACATATTCCTCCT
AACGTGGAATTCCCAGCACATACTAGCCAAATTGCAAAATTGTTGGTTGC
AGCGGTAGGGGGATGGAATCTGTTTGTTCAGTTGAAACGCTAGTAGAATC
TGAAAACCCTTCGAGAATGAACGGCATGCCCGAATTCTACCCGATCATAC
GATCGCACTTGGCTCCGAAGAAGCTCCAAGAGGTCCAGCTTGCGTCGGGC
TCAAATCTTGGTCGATCACAAATCTCGAGCTTAGGCTTGAATAGCGGATT
TAGCGCCGGATCCACCGCGAGCTGTGTTCTCAGCCATGTTCTCCTGCTCG
GGAATGGTTGCTCTGTATGGCATTCGACACTCACGGTCATCACCCACGGG
GGGGGGGGGTATTCTGTCTCGTTCTTCATCCAAGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10665:450..2085+

>mRNA_E-siliculosus-1a_F_contig10665.474.1 ID=mRNA_E-siliculosus-1a_F_contig10665.474.1|Name=mRNA_E-siliculosus-1a_F_contig10665.474.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1758bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10665:450..2085+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGAAGTTGGGAACAGGAGGTGCTGGATAGTTTTTTCGACATCGCACG
GCAACAACAACGGGAGATATTGAAGGACGTTCCTGTTAGGGATTCCGCGA
TGAACATGCGCCGGGAGCGCTTTTGCTTGGCACTGATGAAAGACACACCA
AGCGCGGGAGACGCTTGGCACTTAGAAATTCGCAGCTTTCGTTCTGGTGT
GTGCATGTATGTCCTGCGGATAACACGTGGTCTAGGAGGAAGTATCACCT
ATCTCGTGGGTTTGATTGCATTACGAACGTTTAGTAGGAGGCTGACGCGT
TGCCCGCCCTACCCAAACTGTTTTCCGTTCCGTTCCAGATACGAATACAG
TCTTCGACACCTGTGTGGCCTGGAGGGAAAGCGTATGGCATACCGCCCTC
AGTCCTGCGCCCGAATCGCCTCCGTGGGATGGGGTGGCTCGGGCGAAGGG
GGCTACGGCCACGGCTGCCCGTACCACTCTCGCCGGAAACAGGCAGGTGG
CGGCGGCAGCGGTAGCGGGCAATCAATGGCCGGCGGCTCGAACGACACCA
GCCTTCGAGGTATGCTAGTGGCCCAAAGTCTTCCTGCAGCAGACATTGAA
GACATCATCGCCCCTCTGGAAAGCTGTCGGGGGGCAGGGGCGGTGGGGGC
ATGTCGAAGACACTTTTCGGCGACACACCGTTGGGCGGCGGCTGGCGGAG
GCGTGTGGAGGACGGAGGGCGAAGGGGCTCAGGAGGCAAGTCCAAACGGG
TGGCTAGCGGCATCGACGAGGTCAAACCAACAGCAGCCGCAGCAGCAGCA
GCTGCTACGACAACGGCCACAGCAGCAGCAGCCGGTGGGAAAGGGAGAGT
TTCTATCGCAGGAGGGCCAGGGTGTTTAGATGAGAAGTTGGGAACAGGAG
GTGCTGGATAGTTTTTTCGACATCGCACGGCAACAACAACGGGAGATATT
GAAGGACGTTCCTGTTAGGGATTCCGCGATGAACATGCGCCGGGAGCGCT
TTTGCTTGGCACTGATGAAAGACACACCAAGCGCGGGAGACGCTTGGCAC
TTAGAAATTCGCAGCTTTCGTTCTGGTGTGTGCATGTATGTCCTGCGGAT
AACACGTGGTCTAGGAGGAAGTATCACCTATCTCGTGGGTTTGATTGCAT
TACGAACGTTTAGTAGGAGGCTGACGCGTTGCCCGCCCTACCCAAACTGT
TTTCCGTTCCGTTCCAGATACGAATACAGTCTTCGACACCTGTGTGGCCT
GGAGGGAAAGCGTATGGCATACCGCCCTCAGTCCTGCGCCCGAATCGCCT
CCGTGGGATGGGGTGGCTCGGGCGAAGGGGGCTACGGCCACGGCTGCCCG
TACCACTCTCGCCGGAAACAGGCAGGTGGCGGCGGCAGCGGTAGCGGGCA
ATCAATGGCCGGCGGCTCGAACGACACCAGCCTTCGAGGTATGCTAGTGG
CCCAAAGTCTTCCTGCAGCAGACATTGAAGACATCATCGCCCCTCTGGAA
AGCTGTCGGGGGGCAGGGGCGGTGGGGGCATGTCGAAGACACTTTTCGGC
GACACACCGTTGGGCGGCGGCTGGCGGAGGCGTGTGGAGGACGGAGGGCG
AAGGGGCTCAGGAGGCAAGTCCAAACGGGTGGCTAGCGGCATCGACGAGG
TCAAACCAACAGCAGCCGCAGCAGCAGCAGCTGCTACGACAACGGCCACA
GCAGCAGCAGCCGGTGGGAAAGGGAGAGTTTCTATCGCAGGAGGGCCAGG
GTGTTTAG
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