mRNA_E-siliculosus-1a_F_contig10654.465.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10654.465.1
Unique NamemRNA_E-siliculosus-1a_F_contig10654.465.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10654.465.1 vs. uniprot
Match: D7G549_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G549_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.120e-16
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:  385 MAAIVITGASVAAPLGIDIRNMRDSYF-QDGPEIGAGDVLFRLLGPAVLSFAAPLFR 552
            MAA  ITGAS+AA  G DI  MR++YF QDGPE+GAG+VL+RLLGPAVLSFAAPLFR
Sbjct:    1 MAATAITGASIAALSGFDISLMRNAYFLQDGPEVGAGNVLYRLLGPAVLSFAAPLFR 57
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10654.465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G549_ECTSI4.120e-1675.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10654contigE-siliculosus-1a_F_contig10654:851..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size555
Model size557
Exons2
Hectar predicted targeting categorysignal anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.8128915-CDS-E-siliculosus-1a_F_contig10654:850..13231622927565.8128915-CDS-E-siliculosus-1a_F_contig10654:850..1323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10654 851..1323 +
1696318589.0180862-CDS-E-siliculosus-1a_F_contig10654:850..13231696318589.0180862-CDS-E-siliculosus-1a_F_contig10654:850..1323Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10654 851..1323 +
1622927565.822682-CDS-E-siliculosus-1a_F_contig10654:1831..19131622927565.822682-CDS-E-siliculosus-1a_F_contig10654:1831..1913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10654 1832..1913 +
1696318589.0258844-CDS-E-siliculosus-1a_F_contig10654:1831..19131696318589.0258844-CDS-E-siliculosus-1a_F_contig10654:1831..1913Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10654 1832..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10654.465.1prot_E-siliculosus-1a_F_contig10654.465.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10654 851..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10654.465.1

>prot_E-siliculosus-1a_F_contig10654.465.1 ID=prot_E-siliculosus-1a_F_contig10654.465.1|Name=mRNA_E-siliculosus-1a_F_contig10654.465.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=185bp
TSITLDAAATPAVSSTLPTERARRPTSGDLFSARLVGRLGIATVVSGAAS
VIIFELIFPWVPFSLESFSLFGAFVIVGLIPAFVGVQASMGLATLFGYSA
GYVAVSPGGALGSHRPTWKAALLPLATSMAAIVITGASVAAPLGIDIRNM
RDSYFQDGPEIGAGDVLFRLLGPAVLSFAAPLFR*
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10654:851..1913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10654.465.1 ID=mRNA_E-siliculosus-1a_F_contig10654.465.1|Name=mRNA_E-siliculosus-1a_F_contig10654.465.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1063bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10654:851..1913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACTTCTATCACCCTTGACGCTGCTGCTACCCCGGCGGTGTCGTCTACGTT
ACCCACGGAACGCGCGAGACGACCAACGTCGGGAGATTTATTCAGCGCTC
GGCTCGTTGGACGGCTGGGCATTGCGACGGTGGTGTCAGGAGCGGCATCG
GTTATAATCTTTGAGCTGATCTTCCCGTGGGTGCCATTCTCGTTGGAGTC
GTTTTCTTTGTTCGGGGCCTTTGTCATCGTTGGCCTCATTCCTGCCTTTG
TCGGCGTACAGGCGTCCATGGGTTTGGCGACGCTATTCGGTTATTCGGCA
GGGTACGTCGCTGTCTCGCCCGGCGGCGCGCTTGGTTCTCATCGTCCTAC
TTGGAAGGCTGCGCTTCTTCCACTGGCGACGAGTATGGCAGCTATCGTCA
TCACGGGCGCCAGCGTAGCTGCACCGTTAGGCATCGATATTCGCAATATG
CGTGATTCGTACTTTCAAGATGGGTGAGCGACAGAGAGGGGGCACATTAC
TACATGGGGGGCACTTGGGGATTGGACGGTTTGTCCATGAATTCCGTTGC
CCGCGCGCGCTTTGCTAACCACGAAAACGACCGATAAAACGATTTTTGTA
AGGATGAATGTCGTTCGAGTGAACTGGGTTGGTGCTGATTTTCCGAGGGC
CTGGCTGCCCAACATTTGCGGGAGAATGGAACGAGGCGGTGCGAGGGCAA
GTGAGAAACGGGACGAGGGGGACAAGTTTCGCCTGGAGTCGTCAATTGCT
TGACGGTTTTCAGTTTGAAAGGCTGATCTAGACGAACTGTTGGGGGCATA
TTTCGTAACACGCACTAGTCACCTCTCACTGCCTCCCGGCAGCGATCGCT
CCTATTTAACCTCCTCGAAACTTCACGAAGCCCAACCGGCAATCCACCTG
TCCTTGATAGGTGATACTGAAATCACACCAAACGCGCACATGTTCACAAT
CTTCACCGCCTTGTTTCCGCACTGACTCTAGGCCTGAGATTGGAGCCGGC
GACGTTCTGTTCAGGCTTCTGGGTCCTGCCGTGCTCTCGTTCGCTGCGCC
GCTGTTTAGGTGA
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10654:851..1913+

>mRNA_E-siliculosus-1a_F_contig10654.465.1 ID=mRNA_E-siliculosus-1a_F_contig10654.465.1|Name=mRNA_E-siliculosus-1a_F_contig10654.465.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10654:851..1913+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ACTTCTATCACCCTTGACGCTGCTGCTACCCCGGCGGTGTCGTCTACGTT
ACCCACGGAACGCGCGAGACGACCAACGTCGGGAGATTTATTCAGCGCTC
GGCTCGTTGGACGGCTGGGCATTGCGACGGTGGTGTCAGGAGCGGCATCG
GTTATAATCTTTGAGCTGATCTTCCCGTGGGTGCCATTCTCGTTGGAGTC
GTTTTCTTTGTTCGGGGCCTTTGTCATCGTTGGCCTCATTCCTGCCTTTG
TCGGCGTACAGGCGTCCATGGGTTTGGCGACGCTATTCGGTTATTCGGCA
GGGTACGTCGCTGTCTCGCCCGGCGGCGCGCTTGGTTCTCATCGTCCTAC
TTGGAAGGCTGCGCTTCTTCCACTGGCGACGAGTATGGCAGCTATCGTCA
TCACGGGCGCCAGCGTAGCTGCACCGTTAGGCATCGATATTCGCAATATG
CGTGATTCGTACTTTCAAGATGGACTTCTATCACCCTTGACGCTGCTGCT
ACCCCGGCGGTGTCGTCTACGTTACCCACGGAACGCGCGAGACGACCAAC
GTCGGGAGATTTATTCAGCGCTCGGCTCGTTGGACGGCTGGGCATTGCGA
CGGTGGTGTCAGGAGCGGCATCGGTTATAATCTTTGAGCTGATCTTCCCG
TGGGTGCCATTCTCGTTGGAGTCGTTTTCTTTGTTCGGGGCCTTTGTCAT
CGTTGGCCTCATTCCTGCCTTTGTCGGCGTACAGGCGTCCATGGGTTTGG
CGACGCTATTCGGTTATTCGGCAGGGTACGTCGCTGTCTCGCCCGGCGGC
GCGCTTGGTTCTCATCGTCCTACTTGGAAGGCTGCGCTTCTTCCACTGGC
GACGAGTATGGCAGCTATCGTCATCACGGGCGCCAGCGTAGCTGCACCGT
TAGGCATCGATATTCGCAATATGCGTGATTCGTACTTTCAAGATGGGCCT
GAGATTGGAGCCGGCGACGTTCTGTTCAGGCTTCTGGGTCCTGCCGTGCT
CTCGTTCGCTGCGCCGCTGTTTAGGTGAGCCTGAGATTGGAGCCGGCGAC
GTTCTGTTCAGGCTTCTGGGTCCTGCCGTGCTCTCGTTCGCTGCGCCGCT
GTTTAGGTGA
back to top