mRNA_E-siliculosus-1a_F_contig10651.464.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10651.464.1
Unique NamemRNA_E-siliculosus-1a_F_contig10651.464.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: D7FMH7_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH7_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.950e-74
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1
Query:   25 TLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            TLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER
Sbjct:  112 TLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 227          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A6H5JMA5_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA5_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 3.730e-71
Identity = 112/117 (95.73%), Postives = 114/117 (97.44%), Query Frame = 1
Query:   22 ATLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            ATLDP REVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNT ITFACPPPNKPVAWGSVPFEPLFQCLSHENIV L++CLLLER
Sbjct:  306 ATLDPEREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTIITFACPPPNKPVAWGSVPFEPLFQCLSHENIVTLVSCLLLER 422          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A835ZGT0_9STRA (UDENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGT0_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.740e-43
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   28 LDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLERC 375
            L P   ++ PKCLCLLS+WP+F  +REWL NL+ ISLSP  IPLERY+ NF+LEVP   PGR EV Y MG   +TFACPPPNKP+AW ++PFE LFQCL  EN+  +   +LLERC
Sbjct:  162 LGPEEALFTPKCLCLLSSWPFFTSYREWLTNLFLISLSPSDIPLERYICNFMLEVPNAVPGRTEVRYRMGANDLTFACPPPNKPIAWRALPFETLFQCLDDENVAAVFEAVLLERC 277          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A7S1TYQ9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYQ9_9STRA)

HSP 1 Score: 129 bits (325), Expect = 5.530e-32
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   37 GREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            G EV APKCL +LS WP+   +REWL  LYR+SLSP  +PLE Y+G+F  EVP P PGR  V   + + TI+F  PP N P++W ++P+ PLF+CL   +I+ L TCLLLE+
Sbjct:  214 GVEVLAPKCLVVLSYWPHHLSYREWLKQLYRVSLSPTPVPLEAYIGSFCHEVPLPPPGRTLVQVAIADQTISFHTPPENAPMSWSALPYAPLFECLRPADIICLFTCLLLEK 325          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A4D9DDS2_9STRA (UDENN domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDS2_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.020e-31
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 1
Query:   22 ATLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAW-GSVPFEPLFQCLSHENIVILLTCLLLER 372
            AT   G  V+APKCLCLLS +P+    R WLL LYR+S SP +IPLERY+ NFLLEVPTP PGRV+V Y+M +  + + CP P++P  W G +  E +F+CLS +N++ +   +LLE+
Sbjct:  180 ATRPRGGRVFAPKCLCLLSKYPFVEASRTWLLQLYRLSCSPTRIPLERYICNFLLEVPTPVPGRVDVQYSMLDLVLYYPCPSPHQPALWSGGLSLEAVFECLSPKNLLRVFNAVLLEQ 297          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A7S2RHS4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHS4_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.330e-28
Identity = 50/121 (41.32%), Postives = 77/121 (63.64%), Query Frame = 1
Query:   10 LVCQATLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            + C+      +  Y PKCLC+LS WP+   +R +L  LYR+S+SP  +PLER + NF+ EVP P PG+V +L+N+G+  + F  PP N P++W  + F+ +F+ L   NI+ + + LL ER
Sbjct:  114 MYCEEWNRLNKRFYVPKCLCILSHWPFRSQYRTFLTQLYRLSISPVTVPLERIISNFVCEVPVPPPGKVRILHNIGDAELVFTRPPVNNPISWTDLGFQQVFEALDLHNILRVFSALLTER 234          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A7S1ZPM9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZPM9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.780e-27
Identity = 52/112 (46.43%), Postives = 74/112 (66.07%), Query Frame = 1
Query:   40 REVYAPKCLCLLSTWPYFGPFREWLLNLYRIS-LSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            R+VY PKCL +LST+PY   FRE+L  L+R++ +    +P+ERY+ NF  E+P P PG  EV   + ++ I F  PP N+P+AW S+PF  LF+CL  EN++ +   L LER
Sbjct:   42 RKVYLPKCLTILSTYPYLVAFREYLSQLHRLTKMGDMPMPIERYIVNFCAEIPAPPPGSFEVQTTVLDSVIKFWSPPYNQPIAWVSLPFSHLFECLEIENVITVWHALALER 153          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A1Z5J788_FISSO (UDENN domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J788_FISSO)

HSP 1 Score: 114 bits (286), Expect = 9.640e-27
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 1
Query:   43 EVYAPKCLCLLSTWPYFGPFREWLLNLYRISLS-PFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
             VY PKC+ LLST+PY   FRE+L  L R+S +    +P+ERY+ NF  EVP P PG  EV   MG++ I    PP N P+AW S+PF  LF+CL  EN++++  CL+LER
Sbjct:  154 RVYIPKCVVLLSTYPYLAAFREYLTQLERLSKAGEMTVPIERYITNFCSEVPAPPPGSFEVQTTMGDSVIKIWSPPNNVPIAWVSLPFSYLFECLDVENVILVWHCLVLER 264          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A7R9VNS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VNS9_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.020e-26
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   40 REVYAPKCLCLLSTWPYFGPFREWLLNLYRIS-LSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            +EVY PKC+ L+S +PY   FRE+L+ L+R+S +   ++PLERY+ NF  E+P P PG  EV   + ++ I    PP N+P+AW S+PF  LF+CL  ENI+ +  CL LER
Sbjct:  208 KEVYLPKCVVLISAYPYLTAFREFLVQLHRMSKMGEMRLPLERYIVNFCAEIPAPPPGSFEVQTTILDSVIKIWSPPHNQPIAWVSLPFSHLFECLDIENILTVWHCLALER 319          
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Match: A0A482UKM8_9ARCH (UDENN domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UKM8_9ARCH)

HSP 1 Score: 110 bits (275), Expect = 9.230e-26
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   28 LDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQIPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVPFEPLFQCLSHENIVILLTCLLLER 372
            LD    ++ PKC C+LS W  F  FRE L  LYRISLSP  +PLER++ NF  EVP P  G++EV Y +G+ ++ F  PP N+ V+   +PF  +F+CLS  +I+ L  C+LL+R
Sbjct:   10 LDDTGVIFVPKCFCILSRWN-FSAFRELLTELYRISLSPSPLPLERFITNFASEVPLPPAGKLEVQYAIGSVSLYFKRPPKNRRVSALDLPFHTVFECLSLPSILFLFRCVLLDR 123          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10651.464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMH7_ECTSI2.950e-74100.00UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JMA5_9PHAE3.730e-7195.73UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZGT0_9STRA2.740e-4361.21UDENN domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S1TYQ9_9STRA5.530e-3252.68Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9DDS2_9STRA1.020e-3151.69UDENN domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S2RHS4_9STRA4.330e-2841.32Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S1ZPM9_9STRA2.780e-2746.43Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A1Z5J788_FISSO9.640e-2749.55UDENN domain-containing protein n=2 Tax=Fistulifer... [more]
A0A7R9VNS9_9STRA1.020e-2647.32Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A482UKM8_9ARCH9.230e-2646.96UDENN domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10651contigE-siliculosus-1a_F_contig10651:1270..2202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size447
Model size447
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGsKOG2127@1,KOG2127@2759
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
KEGG koko:K20163
Seed eggNOG ortholog2880.D7FMH7
Seed ortholog evalue2.9e-65
Seed ortholog score254.6
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927565.7605226-CDS-E-siliculosus-1a_F_contig10651:1269..14971622927565.7605226-CDS-E-siliculosus-1a_F_contig10651:1269..1497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10651 1270..1497 -
1696318589.0009727-CDS-E-siliculosus-1a_F_contig10651:1269..14971696318589.0009727-CDS-E-siliculosus-1a_F_contig10651:1269..1497Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10651 1270..1497 -
1622927565.7730188-CDS-E-siliculosus-1a_F_contig10651:1983..22021622927565.7730188-CDS-E-siliculosus-1a_F_contig10651:1983..2202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10651 1984..2202 -
1696318589.0101652-CDS-E-siliculosus-1a_F_contig10651:1983..22021696318589.0101652-CDS-E-siliculosus-1a_F_contig10651:1983..2202Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10651 1984..2202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10651.464.1prot_E-siliculosus-1a_F_contig10651.464.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10651 1270..2202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10651.464.1

>prot_E-siliculosus-1a_F_contig10651.464.1 ID=prot_E-siliculosus-1a_F_contig10651.464.1|Name=mRNA_E-siliculosus-1a_F_contig10651.464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=149bp
MARLVCQATLDPGREVYAPKCLCLLSTWPYFGPFREWLLNLYRISLSPFQ
IPLERYVGNFLLEVPTPSPGRVEVLYNMGNTTITFACPPPNKPVAWGSVP
FEPLFQCLSHENIVILLTCLLLERCSRLSLVLLSLLLLLLLLLLLLLPL
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mRNA from alignment at E-siliculosus-1a_F_contig10651:1270..2202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10651.464.1 ID=mRNA_E-siliculosus-1a_F_contig10651.464.1|Name=mRNA_E-siliculosus-1a_F_contig10651.464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=933bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10651:1270..2202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACGTCTTGTTTGCCAGGCCACCTTGGACCCCGGGCGTGAGGTTTA CGCCCCGAAGTGCCTCTGCCTGCTGTCGACATGGCCCTACTTTGGGCCGT TCCGGGAGTGGCTCCTCAACCTCTATCGAATATCGCTGTCTCCTTTCCAG ATACCTTTGGAGAGGTACGTCGGAAACTTTCTGCTGGAAGTGCCGACCCC TTCGCCCGGTAGAGTCGAGGTGAGTGGCGTGGAGTGACCCGCAGTTGTTG TTGTTGTTGTTGTTGTTGTTGTCGTCGTTGCTGCTGGTACCGTTGCTGTT TGTTGTTGCTGCTGGTACTGTTGTTGTTTGTTGTTGCTGTCGTTGTCGTC GTTGTCGTTGTTGTCGTCGTCGTCGTTGTTGTTGTTGTTGTGTGGTCCTT GTTGTGTGATCCTTGCTGTTGTTGCTGCTGTGCTGCTGCCGGTGTCGTCT TTGTTGGTTATGTTTTGTCGTTTGTTGTTGTGTTGTTTATGGAGTAAGAT CAAATACTCCCTGCGTAAGTGTTCCCGTCGACTGCTGGACTACGCCGACC TCCTTCGTTGTTAACATTTGAAGGAATCGCAGCGCTCTTGTTGCTGTTTA CCCCCTCTATACCCTTGCTTGCATCGGCACCGTTCGGTCATGTCTCCGGT TTTAAGTGACGCCTCCCTCTTGCCTCCCTCCGCGTGCCTCGTTCTCCCCT CGAAGGTGCTGTACAACATGGGCAACACGACAATCACGTTCGCGTGCCCC CCGCCCAACAAGCCGGTGGCGTGGGGCTCGGTCCCCTTCGAGCCGCTCTT CCAGTGCCTCAGCCACGAGAACATCGTCATTCTCCTAACCTGCCTTCTGC TAGAGAGGTGCAGTCGTCTTTCGTTAGTATTGTTGTCGTTGTTGTTGTTG TTGTTGTTGCTGCTGCTGTTGCTGTTGCCGTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10651:1270..2202-

>mRNA_E-siliculosus-1a_F_contig10651.464.1 ID=mRNA_E-siliculosus-1a_F_contig10651.464.1|Name=mRNA_E-siliculosus-1a_F_contig10651.464.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=894bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10651:1270..2202- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCACGTCTTGTTTGCCAGGCCACCTTGGACCCCGGGCGTGAGGTTTA
CGCCCCGAAGTGCCTCTGCCTGCTGTCGACATGGCCCTACTTTGGGCCGT
TCCGGGAGTGGCTCCTCAACCTCTATCGAATATCGCTGTCTCCTTTCCAG
ATACCTTTGGAGAGGTACGTCGGAAACTTTCTGCTGGAAGTGCCGACCCC
TTCGCCCGGTAGAGTCGAGATGGCACGTCTTGTTTGCCAGGCCACCTTGG
ACCCCGGGCGTGAGGTTTACGCCCCGAAGTGCCTCTGCCTGCTGTCGACA
TGGCCCTACTTTGGGCCGTTCCGGGAGTGGCTCCTCAACCTCTATCGAAT
ATCGCTGTCTCCTTTCCAGATACCTTTGGAGAGGTACGTCGGAAACTTTC
TGCTGGAAGTGCCGACCCCTTCGCCCGGTAGAGTCGAGGTGCTGTACAAC
ATGGGCAACACGACAATCACGTTCGCGTGCCCCCCGCCCAACAAGCCGGT
GGCGTGGGGCTCGGTCCCCTTCGAGCCGCTCTTCCAGTGCCTCAGCCACG
AGAACATCGTCATTCTCCTAACCTGCCTTCTGCTAGAGAGGTGCAGTCGT
CTTTCGTTAGTATTGTTGTCGTTGTTGTTGTTGTTGTTGTTGCTGCTGCT
GTTGCTGTTGCCGTTGGTGCTGTACAACATGGGCAACACGACAATCACGT
TCGCGTGCCCCCCGCCCAACAAGCCGGTGGCGTGGGGCTCGGTCCCCTTC
GAGCCGCTCTTCCAGTGCCTCAGCCACGAGAACATCGTCATTCTCCTAAC
CTGCCTTCTGCTAGAGAGGTGCAGTCGTCTTTCGTTAGTATTGTTGTCGT
TGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTGCTGTTGCCGTTG
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