mRNA_E-siliculosus-1a_F_contig1064.453.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: D7G3N2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N2_ECTSI) HSP 1 Score: 457 bits (1177), Expect = 2.490e-159 Identity = 230/236 (97.46%), Postives = 233/236 (98.73%), Query Frame = 1 Query: 547 IRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIASTECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEAGVLDPLVETLGHDSSKV 1254
+ S+RWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCA LRPEALCALTNIASTECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVL AGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEAGVLDPLVETLGHDSSK+
Sbjct: 6 LTSLRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAGLRPEALCALTNIASTECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLGAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEAGVLDPLVETLGHDSSKL 241
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A6H5KI31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI31_9PHAE) HSP 1 Score: 245 bits (625), Expect = 8.120e-77 Identity = 151/184 (82.07%), Postives = 154/184 (83.70%), Query Frame = 1 Query: 1 MQAKEAASGRGRAPAGDRKTLEGRRRERKLSADRRKSGPKATDVESMRQDGKAGRRRLSDNHRRTSKGNKAATLRRERSSLRPPLAGHPGMGRASLPARFAAPLLAKQRATPPAAXXXXXXXPATARSQQDVAAVAMDLDKEEXXEEAKPAEETGEGDDAHWTPEMVTEAAKVILGGDRQHQIR 552
MQAKEAASGRGRAP GDRKTLE RR+ER+LSADRRKSGPKATDVESMRQDGKAGRRRLSDN RRTSKGNKAATLRRER SLRPPLAGHPGMGRASLPARF AP P XXXXXXX QQDV V M+LDKE EE KPAEETGEGDDAHWTPEMVTEAAKVILGGDRQ QIR
Sbjct: 1 MQAKEAASGRGRAPPGDRKTLEERRKERRLSADRRKSGPKATDVESMRQDGKAGRRRLSDNRRRTSKGNKAATLRRERRSLRPPLAGHPGMGRASLPARFGAP--------PAXXXXXXXXXXXXXXXQQDVGVVVMNLDKERQEEEKKPAEETGEGDDAHWTPEMVTEAAKVILGGDRQDQIR 176
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A7J0DBG4_9ERIC (Importin alpha isoform 4 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0DBG4_9ERIC) HSP 1 Score: 162 bits (410), Expect = 1.150e-43 Identity = 98/239 (41.00%), Postives = 135/239 (56.49%), Query Frame = 1 Query: 487 TPEMVTEAAKVILGGDRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS--TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALI 1197
T E + + + D QI + R +LS+ +PP +EV++A +VP+ VEFL + D +L+ EA ALTN+AS +E TR V +E +P V LLSSS +REQ+ W LGN+A D RDLVL G L PLL L+ +H S +R TW L+N CRG PP P V P + LR +I D L DA W L +++ G +D+I AV AG+ + D+LLH + LI
Sbjct: 4 TLESIPSMVQGVWSEDPAAQIEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLGRHDLPQLQFEAAWALTNVASGTSEHTRVV-IEQGAVPQFVQLLSSSSDDVREQAVWALGNVAGDSPSCRDLVLGHGALLPLLAQLN--EHSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLRQLIHL---NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVDLLLHPSPTVLI 236
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A7S2UBR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBR3_9STRA) HSP 1 Score: 151 bits (382), Expect = 4.450e-39 Identity = 92/218 (42.20%), Postives = 123/218 (56.42%), Query Frame = 1 Query: 523 LGGDRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIASTECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLH 1176
L GD++ + SVR R +LSL PP V+ +P V+ L D ++ EA ALTN+ASTE T V +E LPALV LL S D +REQ AWCLGNIA D +RD VLN G +EPLLL++ + ++ WAL+N CRG P P L +AP V L ++ + N DA ++DA W L ++ G DRI VQ +G + +L H
Sbjct: 88 LMGDKEVLLESVRGFRRMLSLEINPPVAAVMNCGALPLFVQMLNLNDHPTIQFEAAWALTNVASTEFTSKV-VEANALPALVALLRSPDADVREQCAWCLGNIAGDSPPLRDTVLNCGAMEPLLLNIE--NPATPAMLQNMVWALSNFCRGKPQPDLHVIAPAVPHLSRMLTS-NNQDA--IVDACWALSYLCDGSDDRIQLVQDSGATEHLVSLLSH 299
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A565B516_9BRAS (Importin subunit alpha n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B516_9BRAS) HSP 1 Score: 156 bits (395), Expect = 5.860e-39 Identity = 92/229 (40.17%), Postives = 132/229 (57.64%), Query Frame = 1 Query: 520 ILGGDRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS-TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEA 1203
+ D Q+ S R +LS+ +PP EEV+RA +VP+ VEFL++ D +L+ EA ALTNIAS T V ++ +P V LL S +REQ+ W LGN+A D + RDLVL G L PLL L+ +H S +R TW L+N CRG P P V+P + +L +I + D L DA W L +++ G +D+I AV +AG++ + ++LLH + LI A
Sbjct: 83 VWSNDPNVQLESTTQFRKLLSIERSPPIEEVIRAGVVPRFVEFLKREDHPQLQFEAAWALTNIASGTSDHTKVVIDHGAVPIFVQLLVSPSDDVREQAVWALGNVAGDSPQCRDLVLGCGALGPLLNQLN--EHAKLSMLRNATWTLSNFCRGKPQPLFDQVSPALVSLERLIHS---NDEEVLTDACWALSYLSDGTNDKIQAVINAGVVPRLVELLLHPSPSVLIPA 306
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A6P5WTY2_DURZI (Importin subunit alpha n=2 Tax=malvids TaxID=91836 RepID=A0A6P5WTY2_DURZI) HSP 1 Score: 155 bits (393), Expect = 1.150e-38 Identity = 92/222 (41.44%), Postives = 130/222 (58.56%), Query Frame = 1 Query: 544 QIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS--TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEA 1203
Q+ + R +LS+ +PP +EV++AR+VP+ VEFL + D +L+ EA ALTN+AS +E TR V +E +P V LLSS+ +REQ+ W LGN+A D RDLVL +G L PLL L+ + S +R TW L+N CRG PP P V P + LR +I D L DA W L +++ G +D+I AV AG+ + ++L H + LI A
Sbjct: 93 QLEATTQFRKLLSIERSPPIDEVIKARVVPRFVEFLGRQDVPQLQFEAAWALTNVASGTSEHTRVV-IEHGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGSGALMPLLAQLN--ERSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILRELIYL---NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPQLVELLGHPSPTVLIPA 308
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A6S9FIN1_HETAK (Importin subunit alpha n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FIN1_HETAK) HSP 1 Score: 153 bits (386), Expect = 9.210e-38 Identity = 89/201 (44.28%), Postives = 123/201 (61.19%), Query Frame = 1 Query: 547 IRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIASTECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLL 1149
I S R R +LS+ PP ++V+ A ++ L+ L +TD +EL+ EA ALTNIASTE T AV +E +P LV LL+ + LREQSAWCLGNIA D E RD++L AG L PLL++++ Q + +R TWAL+N CRG P P L TV P + L ++ D T++DA W L +++ G DRI A G++
Sbjct: 89 IESTRGFRRLLSVETNPPVQDVLAAGVLDTLISLLGRTDSSELQFEAAWALTNIASTEHT-AVVVEHGAVPGLVALLTHAKGDLREQSAWCLGNIAGDCTEFRDMILQAGGLNPLLMNIA--QPESLTLLRNVTWALSNFCRGKPQPDLETVRPAIPALASLLTHT---DQETVVDACWALSYLSDGEDDRIQACVDGGVV 283
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A7N0TFF3_KALFE (Importin subunit alpha n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TFF3_KALFE) HSP 1 Score: 153 bits (386), Expect = 1.100e-37 Identity = 100/256 (39.06%), Postives = 142/256 (55.47%), Query Frame = 1 Query: 442 AKPAEETGEGDDAHWTPEMVTEAAKVILGGDRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS--TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEA 1203
A PA ++ G P MV + + D Q+ + R +LS+ +PP +EV++A +VP+ VEFL++ D +L+ EA ALTN+AS +E TR V +E +P V LLSS+ +REQ+ W LGNIA D RDLVL +G L PLL L+ S +R TW L+N CRG PP P V P + L+ +I D L DA W L +++ G +D+I AV AG+ + ++LLH + LI A
Sbjct: 63 AAPAVQSDVGKKLETIPLMV----QGVWSDDPALQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLQRHDLPQLQFEAAWALTNVASGTSEHTRVV-IELGAVPHFVQLLSSATDDVREQAVWALGNIAGDSPNCRDLVLASGALVPLLGQLNDRSK--LSMLRNATWTLSNFCRGKPPTPFEQVKPALPVLQQLIHL---NDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRIIELLLHPSPTVLIPA 308
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: UPI001FB06AF1 (importin subunit alpha-4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB06AF1) HSP 1 Score: 152 bits (383), Expect = 2.880e-37 Identity = 92/238 (38.66%), Postives = 137/238 (57.56%), Query Frame = 1 Query: 532 DRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS--TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEAGVLDPLVETLGH 1239
D Q+ + R +LS+ +PP +EV++A ++PK VEFL + D +L+ EA ALTN+AS +E TR V +E +P V LLSS+ +REQ+ W LGNIA D RD VL+ G L PLL+ L+ ++ S +R TW L+N CRG PP + V+P + LR +I D L DA W L +++ G ++RI AV AG+ + ++L H + +I P + T+G+
Sbjct: 88 DHTAQVEATTQFRKLLSIERSPPIDEVIKAGVIPKFVEFLGRQDLPQLQFEAAWALTNVASGTSEHTRVV-LEHGAVPMFVQLLSSASDDVREQAIWALGNIAGDSPSCRDFVLSNGALMPLLVQLN--ENSKLSMLRNATWTLSNFCRGKPPTQFNQVSPALPVLRQLIYL---NDEEVLTDACWALSYLSDGPNERIQAVIDAGVCQRLVELLGHPSPTVVI------PALRTIGN 313
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Match: A0A7J7D0S6_TRIWF (Importin subunit alpha n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7D0S6_TRIWF) HSP 1 Score: 151 bits (381), Expect = 5.340e-37 Identity = 90/226 (39.82%), Postives = 130/226 (57.52%), Query Frame = 1 Query: 532 DRQHQIRSVRWLRVVLSLSETPPAEEVVRARLVPKLVEFLRQTDCAELRPEALCALTNIAS--TECTRAVAMEPATLPALVDLLSSSDLYLREQSAWCLGNIAADGVEMRDLVLNAGVLEPLLLSLSPSQHGCTSFMRTGTWALNNLCRGLPPPPLSTVAPIVGTLRPIIEAANTGDAGTLIDAGWVLYHITRGGSDRIDAVQSAGLLSMMPDMLLHENHHALIEA 1203
D Q+ + R +LS+ +PP +EV++A +VP+ VEFL++ D +L+ EA ALTN+AS +E TR V +E +P V LLSS+ +REQ+ W LGN+A D RDLVL G L PLL L+ + S +R TW L+N CRG PP P V P + L+ +I D L DA W L +++ G +D+I AV +G+ + ++L H + LI A
Sbjct: 87 DPASQLEATTQFRKLLSIERSPPIDEVIKAGVVPRFVEFLQRLDLPQLQFEAAWALTNVASGTSEHTRVV-IEHGAVPMFVQLLSSASDDVREQAVWALGNVAGDSPSCRDLVLGNGALIPLLGQLN--ERSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPILQQLIHL---NDEEVLTDACWALSYLSDGPNDKIQAVIDSGVCPRLVELLTHPSPTVLIPA 306 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1064.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1064.453.1 >prot_E-siliculosus-1a_F_contig1064.453.1 ID=prot_E-siliculosus-1a_F_contig1064.453.1|Name=mRNA_E-siliculosus-1a_F_contig1064.453.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=418bp MQAKEAASGRGRAPAGDRKTLEGRRRERKLSADRRKSGPKATDVESMRQDback to top mRNA from alignment at E-siliculosus-1a_F_contig1064:3873..10912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1064.453.1 ID=mRNA_E-siliculosus-1a_F_contig1064.453.1|Name=mRNA_E-siliculosus-1a_F_contig1064.453.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7040bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:3873..10912- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1064:3873..10912- >mRNA_E-siliculosus-1a_F_contig1064.453.1 ID=mRNA_E-siliculosus-1a_F_contig1064.453.1|Name=mRNA_E-siliculosus-1a_F_contig1064.453.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2508bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1064:3873..10912- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |