mRNA_E-siliculosus-1a_F_contig1062.441.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: D7G533_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G533_ECTSI) HSP 1 Score: 372 bits (956), Expect = 9.550e-130 Identity = 194/208 (93.27%), Postives = 198/208 (95.19%), Query Frame = 1 Query: 1 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKVLAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQVL 624
FDRAKLVEILTAPYI DSGDGIVALDPHALKKLFTT NLLQEMGVEGERKRLAMAGETGAIEEDYRQGL SHATRLN+VQDSLEGVEHRF+ T HKAVRIGDRLSKMEGQRARAAEAMDLLEF KVLAKLKSITHELESKELD+AAK LQAYSDFLEQELLDLFER AGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ +
Sbjct: 2 FDRAKLVEILTAPYIGDSGDGIVALDPHALKKLFTTNGNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLASHATRLNEVQDSLEGVEHRFQWTVHKAVRIGDRLSKMEGQRARAAEAMDLLEFLKVLAKLKSITHELESKELDEAAKKLQAYSDFLEQELLDLFERTAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQAV 209
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: A0A6H5KKI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI1_9PHAE) HSP 1 Score: 377 bits (967), Expect = 3.170e-129 Identity = 206/244 (84.43%), Postives = 206/244 (84.43%), Query Frame = 1 Query: 1 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKV--------------------------------------LAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ 618
FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKV LAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ
Sbjct: 111 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKVFEGLPEGFSEDQDTVVRYMKLLPPVFCDEDRRPEAATVLAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ 354
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: D8LCE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCE4_ECTSI) HSP 1 Score: 373 bits (957), Expect = 8.530e-129 Identity = 203/246 (82.52%), Postives = 205/246 (83.33%), Query Frame = 1 Query: 1 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKV--------------------------------------LAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQVL 624
FDRAKLVEILTAPYIEDSGDGIVALDPHAL KLFTTT NLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMD+LEFFKV LAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ +
Sbjct: 36 FDRAKLVEILTAPYIEDSGDGIVALDPHALNKLFTTTGNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDILEFFKVFEGLPEGFSEDQDTVVRYMKLLPPVFCDEDRRAEAATVLAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQAV 281
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: D7G517_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G517_ECTSI) HSP 1 Score: 320 bits (821), Expect = 5.350e-109 Identity = 177/208 (85.10%), Postives = 180/208 (86.54%), Query Frame = 1 Query: 1 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKVLAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQVL 624
FDRAKLVEILTAPYI DSGDGIVALDPHALKKLFTT NLLQEMGVEGERKRLAMAGETGAIEED RQGLTSHATRLN+ AVRIGDRLSKMEGQRARAAEAMDLLEFFKVLAKLKSITHELESKELDKAAK+ SDFLEQELLDLFER AGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQ +
Sbjct: 35 FDRAKLVEILTAPYIGDSGDGIVALDPHALKKLFTTNGNLLQEMGVEGERKRLAMAGETGAIEEDCRQGLTSHATRLNE------------------AVRIGDRLSKMEGQRARAAEAMDLLEFFKVLAKLKSITHELESKELDKAAKSC---SDFLEQELLDLFERTAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQAV 221
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: A0A836C6X2_9STRA (Exocyst complex component Sec10-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X2_9STRA) HSP 1 Score: 206 bits (524), Expect = 1.260e-62 Identity = 117/248 (47.18%), Postives = 154/248 (62.10%), Query Frame = 1 Query: 1 FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFFKV----------------------------------------LAKLKSITHELESKELDKAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGDHLQSRFVFFVVTQVL 624
FD AKLVE LT+PYI D G G VALDPHALKKLF+T S +L M E + + + ++E+DYR GL+ H + L + +L V+ RFR+ AVRIGD L + E QRARAA+A++LLE FKV L++L++I+ EL++ L +AA N++AY+DFLE ELLDLFERAAGR+PPE MREC+DIL+ALNEGDHLQ R+V+ VV++ L
Sbjct: 46 FDTAKLVEALTSPYIADDGAGGVALDPHALKKLFSTVSAMLSTMEAEAAEQTAELEQDAESVEDDYRGGLSQHQSTLELLSANLARVDERFRKVTADAVRIGDSLGRKEAQRARAADAIELLEHFKVFDELPEGFADGGGAALAAAARARLPAVFADEDRRMEAARVLSRLRAISFELDAPGLGRAAGNMRAYADFLEAELLDLFERAAGRAPPEAEFMRECADILYALNEGDHLQGRYVYGVVSRRL 293
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Match: A0A0L0HVE8_SPIPD (Uncharacterized protein n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HVE8_SPIPD) HSP 1 Score: 60.5 bits (145), Expect = 3.540e-7 Identity = 54/194 (27.84%), Postives = 88/194 (45.36%), Query Frame = 1 Query: 76 DPHALKKLFTTTSNLLQEMGVEGERKRLAMAGETGAIEEDYRQGLTSHATRLNKVQDSLEGVEHRFRETAHKAVRIGDRLSKMEGQRARAAEAMDLLEFF--------KVLAKLKSITHELE-------------SKELD-----KAAKNLQAYSDFLEQELLDLFERAAGRSPPEVALMRECSDILFALNEGD 579
DP + F + L + + K + + A + R+ L ++ Q + E +E R E A+RIG++L ++ QRARAAEA DL+++F L LK+ HE E +KE+D A N+++YS+ E+ELL+ F+ A + + M EC+ L N G+
Sbjct: 66 DPRPFIRNFEAAIDELLRLKRKVHNKIEDLEDQAAASDTARRKKLAEINDAMHDAQAAFESLESRLGEVGKTAIRIGEQLETIDKQRARAAEAKDLIQYFIEFNAGNSTRLDDLKAAGHEGEYKAAIVVRRLTAVAKEVDIAGAEAARTNIESYSEQFEKELLERFDEAYRDADRHI--MNECAKTLVEFNGGE 257 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1062.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1062.441.1 >prot_E-siliculosus-1a_F_contig1062.441.1 ID=prot_E-siliculosus-1a_F_contig1062.441.1|Name=mRNA_E-siliculosus-1a_F_contig1062.441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=208bp FDRAKLVEILTAPYIEDSGDGIVALDPHALKKLFTTTSNLLQEMGVEGERback to top mRNA from alignment at E-siliculosus-1a_F_contig1062:1985..4976+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1062.441.1 ID=mRNA_E-siliculosus-1a_F_contig1062.441.1|Name=mRNA_E-siliculosus-1a_F_contig1062.441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2992bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:1985..4976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1062:1985..4976+ >mRNA_E-siliculosus-1a_F_contig1062.441.1 ID=mRNA_E-siliculosus-1a_F_contig1062.441.1|Name=mRNA_E-siliculosus-1a_F_contig1062.441.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1248bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:1985..4976+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |