Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Start | 1 |
Stop | 0 |
Cds size | 312 |
Model size | 556 |
Exons | 1 |
Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927562.9891312-UTR-E-siliculosus-1a_F_contig1062:20354..20596 | 1622927562.9891312-UTR-E-siliculosus-1a_F_contig1062:20354..20596 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1062 20355..20596 + |
1696318587.7538798-UTR-E-siliculosus-1a_F_contig1062:20354..20596 | 1696318587.7538798-UTR-E-siliculosus-1a_F_contig1062:20354..20596 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1062 20355..20596 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927563.0015647-CDS-E-siliculosus-1a_F_contig1062:20596..20908 | 1622927563.0015647-CDS-E-siliculosus-1a_F_contig1062:20596..20908 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1062 20597..20908 + |
1696318587.7629497-CDS-E-siliculosus-1a_F_contig1062:20596..20908 | 1696318587.7629497-CDS-E-siliculosus-1a_F_contig1062:20596..20908 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig1062 20597..20908 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1062.443.1 >prot_E-siliculosus-1a_F_contig1062.443.1 ID=prot_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
MYQTRMPGGRCSRYSRRGVETPRVCHHLGWSSRCDTEWARSKSLQEARVR CITPAAHTFAVLPNRARMHAHYTMKAKQSAKENSEKPLWVQDCCISYFSP SEVS back to topmRNA from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1062.443.1 ID=mRNA_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) CACGTGTGCCGCCGTTGCGCCGACATCTTCCTTGGTTGCAAAATATTTTC
GAGCGACAGCGGCGGCAACGGCAAATGTTTGTTCCGTAACCTTGACACAG
CAACGACACACACGGCTAACCGCCAGCCCGTCCATAAGCACACCAGCCGT
TGAACCTCTCCCTCATCCCAGACACGGTCAACGGCGCAAAATGCTAGACT
GTGAGGTTGCGAGATTCTGTCTTCGTAACAAATTATCCAACAATGTACCA
AACTAGGATGCCAGGAGGGCGTTGTAGTCGCTATTCAAGACGAGGAGTGG
AAACACCCCGGGTTTGCCACCATCTGGGATGGAGCTCGAGATGCGACACA
GAATGGGCGCGCAGTAAATCCTTGCAAGAGGCCCGTGTACGGTGCATCAC
GCCAGCAGCACATACCTTCGCGGTTCTGCCTAACCGAGCCAGGATGCACG
CTCACTACACAATGAAGGCAAAGCAGTCTGCGAAGGAAAACTCAGAGAAA
CCATTGTGGGTACAAGACTGCTGTATATCCTACTTCTCACCAAGTGAAGT
GTCC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ >mRNA_E-siliculosus-1a_F_contig1062.443.1 ID=mRNA_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) ATGTACCAAACTAGGATGCCAGGAGGGCGTTGTAGTCGCTATTCAAGACG AGGAGTGGAAACACCCCGGGTTTGCCACCATCTGGGATGGAGCTCGAGAT GCGACACAGAATGGGCGCGCAGTAAATCCTTGCAAGAGGCCCGTGTACGG TGCATCACGCCAGCAGCACATACCTTCGCGGTTCTGCCTAACCGAGCCAG GATGCACGCTCACTACACAATGAAGGCAAAGCAGTCTGCGAAGGAAAACT CAGAGAAACCATTGTGGGTACAAGACTGCTGTATATCCTACTTCTCACCA AGTGAAGTGTCCATGTACCAAACTAGGATGCCAGGAGGGCGTTGTAGTCG CTATTCAAGACGAGGAGTGGAAACACCCCGGGTTTGCCACCATCTGGGAT GGAGCTCGAGATGCGACACAGAATGGGCGCGCAGTAAATCCTTGCAAGAG GCCCGTGTACGGTGCATCACGCCAGCAGCACATACCTTCGCGGTTCTGCC TAACCGAGCCAGGATGCACGCTCACTACACAATGAAGGCAAAGCAGTCTG CGAAGGAAAACTCAGAGAAACCATTGTGGGTACAAGACTGCTGTATATCC TACTTCTCACCAAGTGAAGTGTCC back to top
|