mRNA_E-siliculosus-1a_F_contig1062.443.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1062.443.1
Unique NamemRNA_E-siliculosus-1a_F_contig1062.443.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1062.443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1062contigE-siliculosus-1a_F_contig1062:20355..20908 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size312
Model size556
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927562.9891312-UTR-E-siliculosus-1a_F_contig1062:20354..205961622927562.9891312-UTR-E-siliculosus-1a_F_contig1062:20354..20596Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1062 20355..20596 +
1696318587.7538798-UTR-E-siliculosus-1a_F_contig1062:20354..205961696318587.7538798-UTR-E-siliculosus-1a_F_contig1062:20354..20596Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1062 20355..20596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927563.0015647-CDS-E-siliculosus-1a_F_contig1062:20596..209081622927563.0015647-CDS-E-siliculosus-1a_F_contig1062:20596..20908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1062 20597..20908 +
1696318587.7629497-CDS-E-siliculosus-1a_F_contig1062:20596..209081696318587.7629497-CDS-E-siliculosus-1a_F_contig1062:20596..20908Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1062 20597..20908 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1062.443.1prot_E-siliculosus-1a_F_contig1062.443.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1062 20597..20908 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1062.443.1

>prot_E-siliculosus-1a_F_contig1062.443.1 ID=prot_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=104bp
MYQTRMPGGRCSRYSRRGVETPRVCHHLGWSSRCDTEWARSKSLQEARVR
CITPAAHTFAVLPNRARMHAHYTMKAKQSAKENSEKPLWVQDCCISYFSP
SEVS
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mRNA from alignment at E-siliculosus-1a_F_contig1062:20355..20908+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1062.443.1 ID=mRNA_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CACGTGTGCCGCCGTTGCGCCGACATCTTCCTTGGTTGCAAAATATTTTC
GAGCGACAGCGGCGGCAACGGCAAATGTTTGTTCCGTAACCTTGACACAG
CAACGACACACACGGCTAACCGCCAGCCCGTCCATAAGCACACCAGCCGT
TGAACCTCTCCCTCATCCCAGACACGGTCAACGGCGCAAAATGCTAGACT
GTGAGGTTGCGAGATTCTGTCTTCGTAACAAATTATCCAACAATGTACCA
AACTAGGATGCCAGGAGGGCGTTGTAGTCGCTATTCAAGACGAGGAGTGG
AAACACCCCGGGTTTGCCACCATCTGGGATGGAGCTCGAGATGCGACACA
GAATGGGCGCGCAGTAAATCCTTGCAAGAGGCCCGTGTACGGTGCATCAC
GCCAGCAGCACATACCTTCGCGGTTCTGCCTAACCGAGCCAGGATGCACG
CTCACTACACAATGAAGGCAAAGCAGTCTGCGAAGGAAAACTCAGAGAAA
CCATTGTGGGTACAAGACTGCTGTATATCCTACTTCTCACCAAGTGAAGT
GTCC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1062:20355..20908+

>mRNA_E-siliculosus-1a_F_contig1062.443.1 ID=mRNA_E-siliculosus-1a_F_contig1062.443.1|Name=mRNA_E-siliculosus-1a_F_contig1062.443.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=624bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1062:20355..20908+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGTACCAAACTAGGATGCCAGGAGGGCGTTGTAGTCGCTATTCAAGACG
AGGAGTGGAAACACCCCGGGTTTGCCACCATCTGGGATGGAGCTCGAGAT
GCGACACAGAATGGGCGCGCAGTAAATCCTTGCAAGAGGCCCGTGTACGG
TGCATCACGCCAGCAGCACATACCTTCGCGGTTCTGCCTAACCGAGCCAG
GATGCACGCTCACTACACAATGAAGGCAAAGCAGTCTGCGAAGGAAAACT
CAGAGAAACCATTGTGGGTACAAGACTGCTGTATATCCTACTTCTCACCA
AGTGAAGTGTCCATGTACCAAACTAGGATGCCAGGAGGGCGTTGTAGTCG
CTATTCAAGACGAGGAGTGGAAACACCCCGGGTTTGCCACCATCTGGGAT
GGAGCTCGAGATGCGACACAGAATGGGCGCGCAGTAAATCCTTGCAAGAG
GCCCGTGTACGGTGCATCACGCCAGCAGCACATACCTTCGCGGTTCTGCC
TAACCGAGCCAGGATGCACGCTCACTACACAATGAAGGCAAAGCAGTCTG
CGAAGGAAAACTCAGAGAAACCATTGTGGGTACAAGACTGCTGTATATCC
TACTTCTCACCAAGTGAAGTGTCC
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