mRNA_E-siliculosus-1a_F_contig10.43.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: D7G0V2_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0V2_ECTSI) HSP 1 Score: 456 bits (1173), Expect = 1.440e-158 Identity = 224/229 (97.82%), Postives = 228/229 (99.56%), Query Frame = 1 Query: 373 KKSPTNATAFDVTEPVSKTPNLTPVVRQEVMVDPPTSRELKYECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHVM 1059
+KSPTNATAFDVTEP SKTPNLTPVVRQEVMVDPPTSRELKYECISESPAYKGWRSILRR+IRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVF+SYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGH+M
Sbjct: 39 RKSPTNATAFDVTEPASKTPNLTPVVRQEVMVDPPTSRELKYECISESPAYKGWRSILRRRIRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFYSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHIM 267
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: D7G6B3_ECTSI (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B3_ECTSI) HSP 1 Score: 189 bits (479), Expect = 3.610e-54 Identity = 91/185 (49.19%), Postives = 122/185 (65.95%), Query Frame = 1 Query: 496 YECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELG 1050
++ ++ AY GWR I+++ +R K +DV+ QE PSV VF W TQTNT T++KE+ PG + +GVV G YE +KH S LQAA ELEEEAHL GTW+ L +D+ T A KYS+ F+ +LVVDP V TP+ +DD EFIE RGVS++E M+ G++S+ S F LM KLR+LG
Sbjct: 48 FKVLNRDLAYSGWRKIVKKTVRVEDEKDYVFDVVHQEEPSVAVFVWHTQTNTLTLIKEFAPGREEVAHGVVAGMYEKNKHDSPLQAAKYELEEEAHLLGGTWHTLCEDDETTINADKYSSNEFYCWLVVDPYVTPTPKPMDDEEFIEIRRGVSMQECMRMVGRGELSIVSSFVVLMGARKLRQLG 232
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A0G4H3V0_VITBC (Nudix hydrolase domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H3V0_VITBC) HSP 1 Score: 157 bits (397), Expect = 4.050e-42 Identity = 85/186 (45.70%), Postives = 109/186 (58.60%), Query Frame = 1 Query: 496 YECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGH 1053
++ I E Y+GW++++ R I P GK YD+ + P+V V WDTQ TT +EYYPG N+ G V G YE KH S L AA ELEEEAHL G W L+ +ER V KYS Q+F+++L +DPV PR LDD E I R V + V G +VT+ AAL+AIEKLRE+G
Sbjct: 37 FKVIGEQMVYQGWKNVMHRTIELPNGKTTRYDINHSDCPAVFVVPWDTQKKTTIFAEEYYPGPNQWKKGFVAGLYERKKHESPLHAAKLELEEEAHLVGGKWINLI-NERGVMDYEKYSDQIFYAFLCLDPVHTDDPRPLDDSEVIYLHRDVPAKAVLEGALHGHFTVTTSLAALLAIEKLREIGE 221
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A7S2RZZ7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZZ7_9STRA) HSP 1 Score: 150 bits (380), Expect = 7.570e-40 Identity = 79/189 (41.80%), Postives = 119/189 (62.96%), Query Frame = 1 Query: 496 YECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHP-SVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTS-ALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHV 1056
Y+ +SE Y+ WR +++RK+ P+G + YDV+ Q+ + ++F WD+ T T TI++EY PG ++++ G+ G E DKH S L AA ELEEE HL GTWY L K +A KY YLV+D PR LD+ E IE + GV+++E++ MI SGDM++ +A+L+A++KL+ELG +
Sbjct: 26 YKILSEKVVYERWRKVIQRKVLMPKGLVVDYDVVDQKGAGAAIIFAWDSSTKTATIVREYNPGCHQVLGGLAAGLIEDDKHGSDPLIAARHELEEECHLGGGTWYQLTKPGVAIA-MDKYVQTRVTPYLVIDAHKIDNPRPLDEEEDIEIVGGVTVDEIKNMIESGDMNLVGSWASLLALQKLKELGEI 213
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A6U2S3A3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2S3A3_9STRA) HSP 1 Score: 150 bits (378), Expect = 2.100e-39 Identity = 81/199 (40.70%), Postives = 117/199 (58.79%), Query Frame = 1 Query: 466 VDPPTSRELKYECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHP-SVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAAC-ELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHV 1056
++ P ++ ++ IS+ Y WR I+RR ++ P G +D++ Q+ +V +F W ++T T T+++EY PG ++ ++GV G E DKH + AA ELEEE HL G WY L D TV KY +YLV+DP PR LD E IE I GVS+ E+ MI SG M++ G+A ++AIEKLRELG +
Sbjct: 29 IEVPQPQQQQHRIISDEVVYSRWRKIIRRVVQFPAGNTVDFDIVDQKGTGAVTIFAWCSKTKTATLVREYNPGCHKSLHGVAAGLIEEDKHQCDPEIAARHELEEECHLQGGRWYRLTADGATVP-MDKYVVTEIAAYLVIDPETVSNPRPLDAEEDIEIISGVSVPEIFDMIRSGGMNLVGGWACMLAIEKLRELGEI 226
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A7S1ZSI2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZSI2_9STRA) HSP 1 Score: 151 bits (382), Expect = 3.370e-39 Identity = 81/198 (40.91%), Postives = 116/198 (58.59%), Query Frame = 1 Query: 493 KYECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQEHP-SVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEAD---KHTSALQAAACELEEEAHLHEGTWYALMKDER------TVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGHV 1056
+YE + E ++ WRSIL R +R P G + YDV+ Q+ +V++F W++QT T T+++EY PG +R++YGV G E D H QAA ELEEE HL GTW+ L T KY+ YLV+D P+ DD E IE +R V+++EV +I SG+M++ G+A L+AIEKLR+LG +
Sbjct: 97 EYELLKEEVVFQRWRSILSRVVRMPNGNVVDYDVVDQKGVGAVVIFVWNSQTKTATLVREYNPGCHRILYGVAAGLIEDDAKHSHGDPKQAAIMELEEECHLSGGTWHCLTTPSSSSSSLPTSVPMDKYAVTNITPYLVIDASHVTNPKPCDDEEDIEIVRNVTIDEVLRLIRSGEMNLVGGWACLLAIEKLRDLGEI 294
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A1E7ER69_9STRA (Nudix hydrolase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER69_9STRA) HSP 1 Score: 149 bits (377), Expect = 3.780e-39 Identity = 77/190 (40.53%), Postives = 115/190 (60.53%), Query Frame = 1 Query: 496 YECISESPAYKGWRSILRRKIRGPQGKIRSYDVITQE--HPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEA--DKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELGH 1053
+E I E Y GWR+I++RK+R K+ +D++ + +VL+F WDT++ T T+++EY P NR+++G+ G E D H + L AA ELEEE HL G W L+ + KYST YLV+DP + P+ LD+ E IE I GV++ E+ +++G+M++ GF L+AIEKLRELG
Sbjct: 48 FEIIDEKTVYSGWRTIVQRKVRMRNNKVVDFDLVGVKTGDSAVLIFAWDTKSKTATLIREYMPASNRILWGLAAGLVEEKHDNHNTEL-AARHELEEECHLKNGKWIPLLHQPTAM---DKYSTTTIQCYLVLDPEKEDNPKALDEEEDIEIIPGVTIPEILRWVNNGEMNLVGGFGCLLAIEKLRELGE 233
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A482S980_9ARCH (NUDIX hydrolase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S980_9ARCH) HSP 1 Score: 140 bits (352), Expect = 2.420e-36 Identity = 75/164 (45.73%), Postives = 105/164 (64.02%), Query Frame = 1 Query: 565 PQGKIRSYDVITQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVD--PVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRELG 1050
P G+ YD+ITQ+H SV+VF WDT + TTT++KEY+PG N++M G V G E +KHTS LQAA ELEEEAHL WY+L+ +E + KYS F YL +D PV P LDD E+I R V+ E+ ++ SG ++V S + ++ ++KL++LG
Sbjct: 3 PHGQKVDYDIITQKHLSVVVFVWDTASATTTLVKEYHPGPNKVMLGAVAGMCENEKHTSILQAAQHELEEEAHLRTDHWYSLL-NEGAIMPFDKYSNNRFIPYLALDCEPVKSAKP--LDDEEYITIHRNVTYNEMMELMASGQINVVSTYTIMLGLKKLKDLG 163
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A7S1XDJ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XDJ4_9RHOD) HSP 1 Score: 134 bits (336), Expect = 4.920e-33 Identity = 73/183 (39.89%), Postives = 114/183 (62.30%), Query Frame = 1 Query: 508 SESPAYKGWRSILRRKIRGPQGKIRSYDVITQEH--PSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKD-ERTVAG--AGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLR 1041
S++ Y+G+RS+ +R++R P G+ ++D++ + H SV VF + ++ + T++KEY PG N ++YGV+ G E KHTS + AA EL EEA+L G L + + + AG KYST FH +L +D + +P D EFIE +RGVSL++VR ++ +G M+V A L+A+E LR
Sbjct: 65 SDTEVYRGYRSVFQRRVRYPSGESFTFDIVGRPHGDSSVFVFPFCRRSRSATLIKEYNPGGNGVLYGVIAGFVEMGKHTSIVDAARRELAEEANLIGGQLIPLQRQTDSSSAGYLKDKYSTDRFHMFLALDSELDPSPPQQDPEEFIEIVRGVSLDQVRTLVFNGQMNVPCSLACLLALEHLR 247
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Match: A0A7S2ZFG6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFG6_9RHOD) HSP 1 Score: 125 bits (313), Expect = 7.270e-30 Identity = 65/187 (34.76%), Postives = 108/187 (57.75%), Query Frame = 1 Query: 493 KYECISESPAYKGWRSILRRKIRGPQGKIRSYDVI---TQEHPSVLVFTWDTQTNTTTILKEYYPGMNRLMYGVVGGNYEADKHTSALQAAACELEEEAHLHEGTWYALMKDERTVAGAGKYSTQVFHSYLVVDPVVKGTPRGLDDGEFIEYIRGVSLEEVRAMIHSGDMSVTSGFAALMAIEKLRE 1044
K+ + E +++ ++++ R IR P GK S+DV + SV VF +DT+T T T+L+EY PG+N +M+G G ++ KH S AA EL EEA L G+++ ++ E KYS +FH +LV++PV P D+ E+I+ ++GV+L ++ ++ G M++ SGF A++ L
Sbjct: 39 KFSILDEKVSFQRYQTVYERLIRYPNGKRVSFDVFGNPRSDFKSVFVFPYDTRTKTVTLLREYIPGINEVMWGFPAGGFDPKKHKSLEDAARSELSEEAFLTGGSYFPML--ESGGVSQDKYSKNMFHMFLVLNPVEDENPLPRDEEEYIQIVKGVTLPRLQKILAQGGMNLPSGFCGYRALDALSN 223 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.43.1 >prot_E-siliculosus-1a_F_contig10.43.1 ID=prot_E-siliculosus-1a_F_contig10.43.1|Name=mRNA_E-siliculosus-1a_F_contig10.43.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=249bp MRSSEKNKVGGGFAGLFRWKKSPTNATAFDVTEPVSKTPNLTPVVRQEVMback to top mRNA from alignment at E-siliculosus-1a_F_contig10:91195..99308- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.43.1 ID=mRNA_E-siliculosus-1a_F_contig10.43.1|Name=mRNA_E-siliculosus-1a_F_contig10.43.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8114bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:91195..99308- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:91195..99308- >mRNA_E-siliculosus-1a_F_contig10.43.1 ID=mRNA_E-siliculosus-1a_F_contig10.43.1|Name=mRNA_E-siliculosus-1a_F_contig10.43.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1494bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:91195..99308- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |