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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: D7FL86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL86_ECTSI) HSP 1 Score: 276 bits (707), Expect = 1.390e-93 Identity = 154/156 (98.72%), Postives = 154/156 (98.72%), Query Frame = 1 Query: 1 MPSVLRGTGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKVR 468
MPSVLR TGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK R
Sbjct: 1 MPSVLRETGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKAR 156
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: A0A6H5KTC9_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC9_9PHAE) HSP 1 Score: 223 bits (569), Expect = 9.440e-71 Identity = 115/146 (78.77%), Postives = 117/146 (80.14%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXX-------------SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSKVR 468
+DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLR SRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWF+VDECDVDGGDDMWPKCGGESLGSKVR
Sbjct: 131 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRQDGFVFANYVVAALVRVFRLLKXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFVVDECDVDGGDDMWPKCGGESLGSKVR 276
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: D8LJT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT9_ECTSI) HSP 1 Score: 230 bits (587), Expect = 2.960e-67 Identity = 130/131 (99.24%), Postives = 131/131 (100.00%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 462
+DVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK
Sbjct: 176 EDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFITTVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGESLGSK 306
BLAST of mRNA_E-siliculosus-1a_F_contig106.431.1 vs. uniprot
Match: A0A2D4BDQ3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ3_PYTIN) HSP 1 Score: 52.4 bits (124), Expect = 6.480e-5 Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1 Query: 70 QDVLVYKRATIARKYVSTWFGPDVLGTVPFASLIGLFIT-----TVDSLQSVNFLRXXXXXXXXXXXXXXXXSRKMAKVDFSRRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVD 411
+D+L+ R IA++YV+TWF PD++ ++P + G + +V SL+ +RXXXXXXXXXXXX +RK+ V ++ RL +++G+++ H+L C W +V D D
Sbjct: 165 EDMLITDRYLIAKRYVTTWFLPDLISSLPTEYIFGGVMDGSHDKSVVSLKLTRVIRXXXXXXXXXXXXLRQFARKIEDV---LEIDAVGARLSQVIGQVLLVTHILACFWHLVGYSDDD 280
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 468 |
| Model size | 468 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko02000 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | U |
| EggNOG OGs | KOG0498@1,KOG0498@2759 |
| EggNOG free text desc. | voltage-gated potassium channel activity |
| KEGG TC | 1.A.1.4 |
| KEGG ko | ko:K21867 |
| Seed eggNOG ortholog | 2880.D8LJT9 |
| Seed ortholog evalue | 7.9e-58 |
| Seed ortholog score | 229.9 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.431.1 >prot_E-siliculosus-1a_F_contig106.431.1 ID=prot_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp
MPSVLRGTGEKQNVQPLTDIETFQDVLVYKRATIARKYVSTWFGPDVLGT
VPFASLIGLFITTVDSLQSVNFLRLVRVFRLLKLMRILRLSRKMAKVDFS
RRLNPSIVRLIKLLGKIVFAGHLLGCTWFMVDECDVDGGDDMWPKCGGES
LGSKVR back to topmRNA from alignment at E-siliculosus-1a_F_contig106:83357..84519+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig106.431.1 ID=mRNA_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1163bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:83357..84519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCTCGGTCCTACGAGGAACAGGAGAAAAGCAAAACGTTCAACCGTT
GACCGATATTGAAACATTCCAGGACGTTTTGGTTTACAAGCGAGCGACCA
TCGCGAGGAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACC
GTGCCTTTCGCATCGCTCATAGGGCTCTTCATCACCACCGTGGATAGCCT
GCAAAGCGTCAACTTCTTACGGTAAGATGGCTTCGTCTTGCCAATTACGT
AGTAGCAGCGTTCGGTGTTTTCTTGGCGTTGTTTCTGTTGCGGACGTTGC
TGGCCAAGGGTGTGCAGCTTTCTGATATTACTTTTGTCGGTGCGTGTACG
CCCGTTCTTGAGCGAAAGGGCAGATCAATCGTCAGCAGGTCAAGTTCCAA
CACATGATCTGAGTCACCTGTGTCCCCTGTTATCCTCGCGTCAAGATTGG
ACCTGATCGGCCTAATGTAGGCGACGGGTTCGGTAAGACAATCAATACCT
GCCGTTGTCTTCTGGTGCATCTGGCTGTGAATGGTGTAAGAATAGAAACG
GAGTAGATGCATGATAGGGTTGTCTGTTCGCTGTCCTGAAATATATCAGC
CACGTTAACCGACTGACCAATGACGACACGTCATTTACCAATCAACGATC
AGCGTAACTCCGAACGAGATGATCTTATCCAAGACCCATCATCAGTGTGA
CGAACACAGCGAGAGGAGGGTGCTCGGGCTCCGTGGTTCCGTGATACCTT
AGGTCGTGGTTGCTGGTAGTACTGTTGGTGTTGAGCCGGTGTTAGTGTTG
GGGTATCTTCATCAACTATGTAGCTCGCCGCAAACACGTACACCGTGGTT
GCAAGCGAGCCAGACAACAACCTGGACACAGCTGACCGCTGCAAGCCAAC
GGTGCTGCAATGTCAGGCTGGTACGTGTGTTCCGGCTGCTGAAGCTGATG
CGGATCCTGCGGCTCTCTAGAAAAATGGCGAAAGTCGACTTCTCCCGGCG
GTTGAACCCCTCGATCGTGCGGCTCATCAAGCTGCTCGGAAAGATCGTGT
TTGCTGGACACTTGCTTGGCTGCACGTGGTTCATGGTGGATGAGTGCGAC
GTCGACGGCGGTGACGACATGTGGCCGAAATGTGGAGGGGAAAGCCTCGG
CTCAAAAGTGAGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:83357..84519+ >mRNA_E-siliculosus-1a_F_contig106.431.1 ID=mRNA_E-siliculosus-1a_F_contig106.431.1|Name=mRNA_E-siliculosus-1a_F_contig106.431.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:83357..84519+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCTCGGTCCTACGAGGAACAGGAGAAAAGCAAAACGTTCAACCGTT
GACCGATATTGAAACATTCCAGGACGTTTTGGTTTACAAGCGAGCGACCA
TCGCGAGGAAGTACGTGTCGACGTGGTTTGGGCCGGACGTCTTGGGTACC
GTGCCTTTCGCATCGCTCATAGGGCTCTTCATCACCACCGTGGATAGCCT
GCAAAGCGTCAACTTCTTACGATGCCCTCGGTCCTACGAGGAACAGGAGA
AAAGCAAAACGTTCAACCGTTGACCGATATTGAAACATTCCAGGACGTTT
TGGTTTACAAGCGAGCGACCATCGCGAGGAAGTACGTGTCGACGTGGTTT
GGGCCGGACGTCTTGGGTACCGTGCCTTTCGCATCGCTCATAGGGCTCTT
CATCACCACCGTGGATAGCCTGCAAAGCGTCAACTTCTTACGGCTGGTAC
GTGTGTTCCGGCTGCTGAAGCTGATGCGGATCCTGCGGCTCTCTAGAAAA
ATGGCGAAAGTCGACTTCTCCCGGCGGTTGAACCCCTCGATCGTGCGGCT
CATCAAGCTGCTCGGAAAGATCGTGTTTGCTGGACACTTGCTTGGCTGCA
CGTGGTTCATGGTGGATGAGTGCGACGTCGACGGCGGTGACGACATGTGG
CCGAAATGTGGAGGGGAAAGCCTCGGCTCAAAAGTGAGAGCTGGTACGTG
TGTTCCGGCTGCTGAAGCTGATGCGGATCCTGCGGCTCTCTAGAAAAATG
GCGAAAGTCGACTTCTCCCGGCGGTTGAACCCCTCGATCGTGCGGCTCAT
CAAGCTGCTCGGAAAGATCGTGTTTGCTGGACACTTGCTTGGCTGCACGT
GGTTCATGGTGGATGAGTGCGACGTCGACGGCGGTGACGACATGTGGCCG
AAATGTGGAGGGGAAAGCCTCGGCTCAAAAGTGAGA back to top
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