mRNA_E-siliculosus-1a_F_contig10.42.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI) HSP 1 Score: 966 bits (2496), Expect = 0.000e+0 Identity = 535/653 (81.93%), Postives = 547/653 (83.77%), Query Frame = 1 Query: 1 MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDQRSSPLSPTGTMSTAAAGAGSXXXGVAGREPAARDNKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRLLPKPHASTGPTATAGGATAPEASATAAVVGGAADSRSGVDYFGAGLRGGGAGVVPPLDAAGSPRGSHQARETWPASGGGRGRYGPLVRSAADMERADKDMASRRRLVEGALAGDAEADPADSAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEEHPIDRDAAAASKVTGFEGLGGGGSGDGGYAGAGGVAWSRDARGPEGLGKVTAGAGGARAADDEKLVGVSPADGSEPRTATAWSVTGTGGFKGGRIRGERAGDGGGSSERIDPRDPRMAVAXXXXXXXXAAE-ACSHETREGGVRTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGXXXXXXXXXXXXXSGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLRQLLIRGDNVVMIWEAPKS 1956
MGEPRTSLWSRLVVFYS + QL + VMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLLEFGMEDEDLARGKPSDPD+R+SPLSPTG MSTAAAGAG XXX AGREP ARDN++LGRGEGAGSSP GDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYR+LPKPHASTGPTATAGG AADSRSGVDYFGAG R GGAGV+PP +AAGSPRGSHQARETWP SGGGR RY PLVRSAADMERADKDMASRRRL EGALAGDAEADPAD AEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPK PSPKPAEEE PIDRDAAAASKVTGFEGLG LGKVT AADDEK VG+SPADGSE R ATAWSVTGTGGFKGGRIRGE AGD GG SERIDPRD RM VA A E ACS ETREGG RTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQG +GEIPAAEVRKKKSTRRSRSKGPWTGE KPVARRRYL+QLLIRGDNVVMIWEAPKS
Sbjct: 1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAAEVRKKKSTRRSRSKGPWTGERKPVARRRYLKQLLIRGDNVVMIWEAPKS 653
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE) HSP 1 Score: 944 bits (2440), Expect = 0.000e+0 Identity = 528/653 (80.86%), Postives = 542/653 (83.00%), Query Frame = 1 Query: 1 MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDQRSSPLSPTGTMSTAAAGAGSXXXGVAGREPAARDNKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRLLPKPHASTGPTATAGGATAPEASATAAVVGGAADSRSGVDYFGAGLRGGGAGVVPPLDAAGSPRGSHQARETWPASGGGRGRYGPLVRSAADMERADKDMASRRRLVEGALAGDAEADPADSAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPSPKPAEEEHPIDRDAAAASKVTGFEGLGGGGSGDGGYAGAGGVAWSRDARGPEGLGKVTAGAGGARAADDEKLVGVSPADGSEPRTATAWSVTGTGGFKGGRIRGERAGDGGGSSERIDPRDPRMAVAXXXXXXXXAAE-ACSHETREGGVRTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGXXXXXXXXXXXXXSGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLRQLLIRGDNVVMIWEAPKS 1956
MGEPRTSLWSRLVVFYS + QL VMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPD+RSSPLSP GTMST AGAGS GVAGRE AAR+NKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFP+EPALDNLAKFYR+LPKP STGP ATAG ADSRSGV YFG+G RGGGAGVVPP AAGSPRGSHQAR+TWPASGGGRGR+G LVRSAADMERADKDMA RRRL EGALAGDAE DPADSA RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLP PKPAEE+ PIDRDAAAASKVTGFEGLG GPEGLGKVTAGAG A AADD+K VGVSPADGSEP ATAW+VTGTGGFKGGRI GE GDGGGSSERI PRDPRM VA A E ACS ETREGG RTATR KLLPQEWGV EREE DPT RTPDAEE+RPRPPL AGR G +GEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYL+QLLIRGDNVVMIWEAPKS
Sbjct: 1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSA-GRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEED-PIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAAEVRKKKSTRRSRSKGPWTGELKPVARRRYLKQLLIRGDNVVMIWEAPKS 651
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 3.640e-11 Identity = 41/89 (46.07%), Postives = 59/89 (66.29%), Query Frame = 1 Query: 853 VEGALAGDAEADPADSAEERFNPVKRIVQEYAGS---GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 1110
V+ + AGDA A +A +R + V + + A + GP+++L R E RR V++RRVNSIRGTC G ++AFD+HMNL+L+DV E Y
Sbjct: 155 VKKSAAGDAGASSKAAAAKRNDAVPTLFERLADTYMDGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.550e-10 Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 949 GSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYT 1113
G+GP S L R+ ENRR VMIR VNS+RG C GL++AFD+H N+++VDV E YT
Sbjct: 218 GTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 9.350e-9 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 Query: 934 VQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 1110
+Q+ GP+ +L R E R V++RRVNS+RGTCTG ++AFD+HMNL+L+DV + Y
Sbjct: 77 IQKCRHLGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL) HSP 1 Score: 67.8 bits (164), Expect = 3.560e-8 Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 955 GPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 1119
GP+++L R E +R V+IRRVNSIRGTC+G ++AFD+HMNL+L+DV E F
Sbjct: 183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.740e-8 Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1 Query: 919 PVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKL 1155
P+ + + GP ++L + + + V+IRRVNSIRGTCTG ++ FD+H N++L+DV E Y V P P +
Sbjct: 155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQPADAPSI 233
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A2P4XRX7_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRX7_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.420e-8 Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1 Query: 859 GALAGDAEADPADSAEERFNP-VKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAF 1119
G A +A+A A A P + ++ + GP+ +L R E R V++RRVNS+RGTC+G ++AFD+HMNL+L+DV ++ F
Sbjct: 154 GPSAAEAKAATAKKAPTLSTPSLFEVLADTYLDGPFRVLRRCFLERTRVFVVVRRVNSVRGTCSGFLKAFDKHMNLVLLDVTHDFIPF 241
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 7.350e-8 Identity = 34/83 (40.96%), Postives = 50/83 (60.24%), Query Frame = 1 Query: 868 AGDAEADPADSAEERFNPV--KRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 1110
A DA+ D P +++ Y GP+ +L R E R V++RRVNS+RGTC+G ++AFD+HMNL+L+DV + Y
Sbjct: 155 AADAKTKVVDKKTRAATPTLFEQLADTYL-DGPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 8.300e-8 Identity = 29/64 (45.31%), Postives = 44/64 (68.75%), Query Frame = 1 Query: 919 PVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENY 1110
PV + + +GP SLL+R R V++RR++SIRGTCTG ++ FD+HMNL+L+DV + +
Sbjct: 156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.42.1 >prot_E-siliculosus-1a_F_contig10.42.1 ID=prot_E-siliculosus-1a_F_contig10.42.1|Name=mRNA_E-siliculosus-1a_F_contig10.42.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=653bp MGEPRTSLWSRLVVFYSTERDGQLRSGVMAEIVAKYGSKEKELSARLLKKback to top mRNA from alignment at E-siliculosus-1a_F_contig10:85131..91095+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.42.1 ID=mRNA_E-siliculosus-1a_F_contig10.42.1|Name=mRNA_E-siliculosus-1a_F_contig10.42.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5965bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:85131..91095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:85131..91095+ >mRNA_E-siliculosus-1a_F_contig10.42.1 ID=mRNA_E-siliculosus-1a_F_contig10.42.1|Name=mRNA_E-siliculosus-1a_F_contig10.42.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3918bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:85131..91095+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |