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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.429.1 vs. uniprot
Match: A0A6H5K045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K045_9PHAE) HSP 1 Score: 456 bits (1172), Expect = 5.380e-152 Identity = 237/268 (88.43%), Postives = 240/268 (89.55%), Query Frame = 1 Query: 64 MLPPRPPPLHAASPAKRRSVPVGFRRXXXXXXXXXXXXXXXXXRELSPRRNNRLVRPQSARFHSSHDVLDTSHLDGLHFEHQQAQEL-RLRHGGRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKRPASADDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPYTFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTSKK 864
MLPPRPP HAASPAKRR VPVGFRR RELSPRR+ RLVRPQSARFHSSHDVLDTSHLDGL+FEHQ+AQ L RLR GRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAK PASADDK TTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPY FHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTSKK
Sbjct: 1 MLPPRPPTFHAASPAKRRPVPVGFRRSSSSVNSSSRGQEEQK-RELSPRRSKRLVRPQSARFHSSHDVLDTSHLDGLYFEHQRAQALLRLRQEGRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKCPASADDKFTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCGTLPPYAFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVLEVGLNGVIRACNNTSKK 267
BLAST of mRNA_E-siliculosus-1a_F_contig106.429.1 vs. uniprot
Match: D8LJT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT7_ECTSI) HSP 1 Score: 321 bits (823), Expect = 1.620e-100 Identity = 167/192 (86.98%), Postives = 170/192 (88.54%), Query Frame = 1 Query: 64 MLPPRPPPLHAASPAKRRSVPVGFRRXXXXXXXXXXXXXXXXXRELSPRRNNRLVRPQSARFHSSHDVLDTSHLDGLHFEHQQAQELRLRHGGRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSPTAKRPASADDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE 639
MLPPRPPPLHAASPAKRRSVPVGF+R RELSPRRNNRLVRPQSARFHSS DVLDTSHLDGL+FEHQ+AQELRLR GRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSP AKRPASA DKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE
Sbjct: 1 MLPPRPPPLHAASPAKRRSVPVGFKRSSSSVNSSSRGQEEEQKRELSPRRNNRLVRPQSARFHSSQDVLDTSHLDGLYFEHQRAQELRLRQEGRRQERKLPVYPSKSAAVKVGIVDDCDDDEDSPAAKRPASAHDKLTTSELDDTRRYGEYSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDE 192
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 807 |
| Model size | 2600 |
| Exons | 2 |
| Ec32 ortholog | Ec-23_000080.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.429.1 >prot_E-siliculosus-1a_F_contig106.429.1 ID=prot_E-siliculosus-1a_F_contig106.429.1|Name=mRNA_E-siliculosus-1a_F_contig106.429.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=269bp
MLPPRPPPLHAASPAKRRSVPVGFRRSSSSVNSSSRGQEEEQKRELSPRR
NNRLVRPQSARFHSSHDVLDTSHLDGLHFEHQQAQELRLRHGGRRQERKL
PVYPSKSAAVKVGIVDDCDDDEDSPTAKRPASADDKLTTSELDDTRRYGE
YSAEEIALRRFMTMVAWGSGLNVVKYNRGRGRVRRVLKFNDEEGFLCWCG
TLPPYTFHKTKVPAQKLLKASRLGNLVTVGIADEGDVAFRCGRLTEAIVL
EVGLNGVIRACNNTSKKS* back to topmRNA from alignment at E-siliculosus-1a_F_contig106:62687..67986- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig106.429.1 ID=mRNA_E-siliculosus-1a_F_contig106.429.1|Name=mRNA_E-siliculosus-1a_F_contig106.429.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5300bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:62687..67986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GACATCACAGCACATTCCCGCCACCTCTCTCTCTCTGTCGACCCTGCTGC
TCTAAACACCACCATGCTTCCTCCACGACCACCACCACTCCACGCTGCCA
GCCCTGCCAAGAGGAGGTCTGTTCCCGTAGGCTTCAGGCGGTCGTCGAGC
TCGGTCAACAGCAGCAGTCGTGGGCAAGAAGAAGAGCAGAAGCGGGAGCT
GTCGCCTAGGAGAAATAACCGGCTTGTTCGGCCGCAGAGCGCAAGGTTCC
ACAGCAGCCACGACGTGCTCGATACCTCTCACTTGGACGGGCTGCACTTC
GAGCACCAGCAGGCGCAGGAGCTCCGTCTTCGGCATGGGGGGCGGCGGCA
GGAGAGGAAGCTACCGGTCTACCCCTCCAAGTCAGCAGCAGTGAAGGTCG
GAATCGTGGATGATTGTGACGATGATGAGGATTCGCCAACAGCCAAACGT
CCTGCTTCTGCTGATGATAAGTTGACCACATCAGAACTTGATGACACAAG
AAGATACGGGGAGTACTCTGCAGAGGAGATCGCGCTGCGTCGCTTCATGA
CGATGGTGGCGTGGGGATCCGGCTTGAATGTGGTCAAGTACAACCGCGGC
AGGGGCCGGGTTCGTCGCGTGCTCAAGTTTAACGACGAGGTGGGTTGTGT
GGTCCCTCCGGTGTTCTGTAGGTCCTGCGGTTTGGTGGTCGTTTTGGTGT
GGTGTCATGATATCGAGTACACTTCGCAGCATCCATACAAAAACTATTAT
CGTCAAGTTGTGTAGTCTCTTGCGCACATGCACACGCGTGCCTGCGTGGC
GAAGGGCATCGCGGAGCGGTGGGCCCTGGTGTTGCTACCCTCTCTACGGC
TGTGTGTGAAACGTCGCGTCTAGGCCGGCCGTACTTTGTTTTTTTTCTTC
ACCTCACTCAGTTTTGGTTCATCGGAACAAACAGGAAACAGGTGAGGTCA
GAATTCCCGTAATCATCATGCAGAGGGAGGGAGACCACCCATTCCTATTC
TCTCTTTCATTCTGCTCGACGATGAGCGTTACATATACTACGCCCTGTCG
CGGGTGAACGGTGGAATCGTGGTGGCCGAGTTCGGTACTTGCCCACTGTC
TTTCTCCGTCTCTCCGCCTGAGACGGGAAGGCGGGTGTGCGGGGCAAGGG
ATGCATGGAGGCGGCGCGTGTGTAGAGCAACAGCAGTCCGAGTTCAACAA
CAACGCAAATCCGAGTCTAACCTGGAAATCGCGCGTGATCTCATGTGGTT
GTTCGAATAAGATTTTCTCATTGTGCACGGCGCAGCTGCCCCGTGCTGGC
AGGCAGGCGTGCGTTGACGCCTGCTGTAGGGTGCCAGGGTCGAGCTTGAA
TTCATCCGGTGCCCTTTCACTTGTGCAGCTGTCCCAGTGTGACGCGCATG
CTGCAAGTTGACGGTTTTTGATTTTTTTTTGCGGAGAAGGGTTGGCCCGT
GATTCCCACGAGAAAAGTCTACCCGCTTTTTTTGGAGCAGGATACGGGAT
GGATATGGATCGGATGTCGCCAGCAAAAATCACTTGCAACATAGACTTGT
CTTGCTACAAACTGCTTCCGTGGGATCATCAAGGCTTGCCTTCGATGCTT
AGGGTTACTTTCAGGCTGTTTGTCCGCGAGCCGTTTACCCGTCGACACGC
ACGCCAAGAGAGGCTGGTGCGGCGATATACGTACACCGCCGCGGCAACTT
CTTCAAAAAACCTGCCCATTGCTTGTTGCCCTCCCCCATCTCATTTTCTT
TGTGTGTTCTGGTGTGTTTTCGAAGAGAAGCTTTTCTAATCACTTGCCCA
AGATCAACCATCACTGATGACGACTACACTGCAGCAGTAGGCACGCAAGC
ATCCCGTTCCCAACAGCTAGTCATCAACCACACAACAGCCTGTAACAGCC
AACCGAATGGATGATGCAGTATTTCCAGAACGATAAAACGCTGCTGCTCT
GTTCATCTATTCACAACTGAAACTCTGATTTTTCACGCCTGCCTCGGACA
TGCACATAAACCTCAAGACGGGTCAACTTTTTTTTTGTCAGCCACACCAG
CTCGACGACGTGCTGTGCGGTTGCGTTACCATCCAGAGTGATCCATATGG
ACGAAAATTTGTCTTGCCGTATGTCACCTGTCGCTTGAAGTTGAACATTA
ACCTCGAGGAGGCACCCTCTACTGCTACTGAAAGTCGGACAGCATAGATA
CAGATTGGTGTGGATGAGGATGAACGGCCGACGGTGCCAGCGGGAGAAAC
GAAATCGCCAAGCAATCTTGGCCTACAGTTATTAATTGCTGGATTAACAA
CTCTGCTCATGTGGATAACGTATGCATTTAGAGAAGCACGCATTGCTCAA
TGTATGTATGGGGTTGGTGGTGTACAAGAACGACGTCCAGACAAGATGGG
ATGATCGCGGAGAACACGAAAAACAAACCTAGATGACATTGAGGTATCAC
ACCCCATCTATGCATGCATACTGCCAAACATCTTGTGGCTTGTTGGTGCA
TTCTTACAGAAGCCCGATTTTCAGCGCTCGATTACTCCGCAATCAAGAGC
AATTATCCAAACAATTTTTGTTGGTAGCGCTCTCGACGAGACGGCGGTCC
CAACGCCGCCGTTTTCGGCACCGCCACTCTTTCGGCTGTGGAATGAGTAT
TCGGGACTTTGGACGATGTCGTACGCCACCACCTACGGTTTGCCATATAC
GCATATGATGACGAAAGAAAAAGAGAGCCCGCCGTTGAAAGAGCGCGCTG
CATCGTCGGAACTCCCTGCGTCGTGACAAGTTGGGACGTATCTATGCACG
AACAATTCATGTTCACATGGAAAGCCCCGCCTACTACTACGCTGCCTGTA
CCGTGTACGGTATTATCGTAGGAGGCGGAGAGATCACAAACACACCCCCA
GACCAATTTTCAAAGCGCGATTGCTACACAGCCAAGCTTGGGCCAACACC
GCAAATGGTGGTTATGGAAACTTCTTGTCGAGGGCTTTCCGTAGACGTAT
CGGGCTCTTTTCCCCACCCAGTTGGTTGTGGAGCGAACCGACCTTTGAAC
CTCGGTCTACACCGTGTGCCATCTCTCCGACTCCTATCCGTGCGGCATAC
GGTGTTCATTGCAGCTTTCGGCCGCCGTGTGGCAGCCCGCTCCGAGGTTT
TTGCCGGAACCAACCCGCGGGGTGGGTGTAATCCCCCCCCCCCCCCCCCC
GCCCCCCCCACTGCGACAGGTAGTCTTACACTACACCGTCCAGGAATGAT
CCCTCCTCTCTCGGTGACTCCGACCCCCCTCGCTGTGATTCCCCCCCCCC
CACTGCGGCTTTTGTCTCATGGCCACCAATCTTTGGCAGGAGGGCTTCCT
TTGCTGGTGCGGCACGCTTCCCCCGTACACCTTCCACAAGACCAAGGTGC
CCGCGCAGAAGCTGCTCAAGGCTTCTCGGCTGGGCAACCTCGTGACGGTC
GGAATCGCAGACGAGGGGGACGTTGCCTTTAGGTGCGGCCGCCTCACGGA
AGCGATCGTGTTGGAGGTCGGCTTGAATGGCGTCATACGGGCGTGCAACA
ATACGAGCAAGAAGTCATGATGCCGTTGTTCGTGTTGGTGTTGGTGTTGG
TGTTGTTGTGTTGACATTGCACGTGTCGGAGGCCTCTGCGTATTATGTAG
CGTCCGCCATGTTCCCCTTGCATGGGGTGGCCCATTGACCGGCGAGAGCA
AAGTATTTTACTGGCGACAAAGGGGAAAGAATAGACGCGACAGCTATATT
AAAGAGTTAGGCCGTAGATCATGGGAAGGTCGTTCCTGATGTCCGTCTTA
TATGGTTTATTTTCGAGACATCAGATAGAGAGATGCTCTCTGCTGGCGGC
AGAAGGCGCTGTTTTTGTCTGCGTTGTAAATTGTGGTAAGAGAGGGGTTG
GCGACGTAGAGACGACTCAATTCAGGGGGGAGAAGGGGCGTGTTTGTCAA
GAATCCTCTCTGTCTGACGATAATCAACCCGAGCTTTACATTGGCGGGCG
AAGTGATGTAGTATGCAGGTATTCGTACAGGGGTTTGCTGAAAACGCACG
ACTAGGCAACGGAAGGAGGGGGAAGGGGGCCATTCCGACCGGGCTATTGT
ACACCGCGGACAGGCTAGTCTACATACCATTCGGTCGACGAAACCACCGC
GCGCCTTGCGTTTTTTCTTTTTGTGCACGGCCTTCTTGTGCATGGGTGGG
TGCTTTGGCACGATTGTCTGGCCATCGGCATCGTTCGTTCGTGATGATGT
CCTTGTCGGCACGGGATGGGGGTGGATTTGTTCGCTCTCTCTGGTTGTCT
AGGTGGCTGGAGCTCTTTCTTTGTACCCGGACTGACAGTGTCGAAAAAGG
CTGTGAGGTTTCCCCTGTGCATCGTGGCGGACGACCGTCGTCCGGATAAG
ACAGAAGTAGAAAGATGAGCGACACATATATGGGGTCGGGTTTGGGGTTA
GGGTTTATAGGGTAAACGACACATGCATGCGTGTTTATGTGGTGGGCGGT
CATTCCGGGGGGAGAGGTCAACAGGACAGACTGTATGTTTACGTTTTATT
TTTATTTTTTCTTATAACCCTTAGAACAATCTCACCTCTGTCCGCAGGAT
GGATTGGGCGATGAACCCGCGGCAGTTTTTCGTAGTCTACGATGTATGTG
CTCGGTGTTGGTCATGCTTGGTTCTCGTACCTCTCAAAGGCGTGAAAGGT
TTATGCTGTGGCGTGTTTATTCGGGTTCATTAGTAGGAGGGGTGCTGGGG
GTGGGCATGTATGCATACTTAGCCAACGTACGGTATAGTGTGGATGTGTC
TTTGAGTGGTGATTTAGGATAGATCAGCGGTTTTTGAAGGTAGCTTATCT
CTGCATTGCACCACTCGCGGGTGGCAGCCGCCTCATCGTCGACCTCTTGC
CAGGCCATGTGCTCATCGTTTTCTTGTATGGCAATCCACAACGCTGGGCC
TCGATCTTTCGTGTAGGTGTGGTCTAATATTATTTTGGGCGAACGCCTAT
CAATGCTGTAACTCGGCGACCTGAATACAGGGCGAGAGAGCGATATCTCC
CAGCTGTGACTAGGAGGCACGGTTATCGTGTGGTGGCTTAAAGTATACTT
CTATTTTTGTCCACTTGCCCTTGGCATCGTTCTTCGTATCGTTTGCAACA
GTCCTCCACTACGAGAGAGATGAACCAATCAGGTCATGTCGGAGGATTGC
CGTACCGTTGGAAGGCAAACACATGATCGTTAACAATAGCCCTACATCAT
GAGATAGATGAACCAAATAGATAGGTGATGTTGCGGAGGATGGCTACATT
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:62687..67986- >mRNA_E-siliculosus-1a_F_contig106.429.1 ID=mRNA_E-siliculosus-1a_F_contig106.429.1|Name=mRNA_E-siliculosus-1a_F_contig106.429.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1614bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:62687..67986- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTTCCTCCACGACCACCACCACTCCACGCTGCCAGCCCTGCCAAGAG
GAGGTCTGTTCCCGTAGGCTTCAGGCGGTCGTCGAGCTCGGTCAACAGCA
GCAGTCGTGGGCAAGAAGAAGAGCAGAAGCGGGAGCTGTCGCCTAGGAGA
AATAACCGGCTTGTTCGGCCGCAGAGCGCAAGGTTCCACAGCAGCCACGA
CGTGCTCGATACCTCTCACTTGGACGGGCTGCACTTCGAGCACCAGCAGG
CGCAGGAGCTCCGTCTTCGGCATGGGGGGCGGCGGCAGGAGAGGAAGCTA
CCGGTCTACCCCTCCAAGTCAGCAGCAGTGAAGGTCGGAATCGTGGATGA
TTGTGACGATGATGAGGATTCGCCAACAGCCAAACGTCCTGCTTCTGCTG
ATGATAAGTTGACCACATCAGAACTTGATGACACAAGAAGATACGGGGAG
TACTCTGCAGAGGAGATCGCGCTGCGTCGCTTCATGACGATGGTGGCGTG
GGGATCCGGCTTGAATGTGGTCAAGTACAACCGCGGCAGGGGCCGGGTTC
GTCGCGTGCTCAAGTTTAACGACGAGATGCTTCCTCCACGACCACCACCA
CTCCACGCTGCCAGCCCTGCCAAGAGGAGGTCTGTTCCCGTAGGCTTCAG
GCGGTCGTCGAGCTCGGTCAACAGCAGCAGTCGTGGGCAAGAAGAAGAGC
AGAAGCGGGAGCTGTCGCCTAGGAGAAATAACCGGCTTGTTCGGCCGCAG
AGCGCAAGGTTCCACAGCAGCCACGACGTGCTCGATACCTCTCACTTGGA
CGGGCTGCACTTCGAGCACCAGCAGGCGCAGGAGCTCCGTCTTCGGCATG
GGGGGCGGCGGCAGGAGAGGAAGCTACCGGTCTACCCCTCCAAGTCAGCA
GCAGTGAAGGTCGGAATCGTGGATGATTGTGACGATGATGAGGATTCGCC
AACAGCCAAACGTCCTGCTTCTGCTGATGATAAGTTGACCACATCAGAAC
TTGATGACACAAGAAGATACGGGGAGTACTCTGCAGAGGAGATCGCGCTG
CGTCGCTTCATGACGATGGTGGCGTGGGGATCCGGCTTGAATGTGGTCAA
GTACAACCGCGGCAGGGGCCGGGTTCGTCGCGTGCTCAAGTTTAACGACG
AGGAGGGCTTCCTTTGCTGGTGCGGCACGCTTCCCCCGTACACCTTCCAC
AAGACCAAGGTGCCCGCGCAGAAGCTGCTCAAGGCTTCTCGGCTGGGCAA
CCTCGTGACGGTCGGAATCGCAGACGAGGGGGACGTTGCCTTTAGGTGCG
GCCGCCTCACGGAAGCGATCGTGTTGGAGGTCGGCTTGAATGGCGTCATA
CGGGCGTGCAACAATACGAGCAAGAAGTCATGAGAGGGCTTCCTTTGCTG
GTGCGGCACGCTTCCCCCGTACACCTTCCACAAGACCAAGGTGCCCGCGC
AGAAGCTGCTCAAGGCTTCTCGGCTGGGCAACCTCGTGACGGTCGGAATC
GCAGACGAGGGGGACGTTGCCTTTAGGTGCGGCCGCCTCACGGAAGCGAT
CGTGTTGGAGGTCGGCTTGAATGGCGTCATACGGGCGTGCAACAATACGA
GCAAGAAGTCATGA back to top
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