mRNA_E-siliculosus-1a_F_contig106.427.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI) HSP 1 Score: 556 bits (1434), Expect = 4.060e-188 Identity = 421/500 (84.20%), Postives = 427/500 (85.40%), Query Frame = 1 Query: 205 MADEDALFAEFMGEIKSTVVAAETKTAADAGE-DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPSPDSSG-KGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGGPXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEV 1698
MADEDALFAEFMGEIKSTVVAAETK AADAGE DDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTA XXXXXXXXXXXXX GK XX +GVK+GSG XXXXXXXXXXXXXXXXXXX DEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGA +GMAGFGXXXXXXXXXXXXXXXXX+PPGXXXXXXXXXXXXXXXX GGPGPYPDGSMGYGYGGPMNGMMPGG XXXXXXXXXXXXXXXXXXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAK+IREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKE+
Sbjct: 1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTARATGSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKDDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXMGGPGPYPDGSMGYGYGGPMNGMMPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE) HSP 1 Score: 522 bits (1345), Expect = 1.330e-174 Identity = 411/551 (74.59%), Postives = 420/551 (76.23%), Query Frame = 1 Query: 205 MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPSPAPKKPRFMGKLVAAARPVKAGAVAAASTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TRPSPDSSGKGKXXXXXXXXXXXXXXXXEGVKDGSGAARGXXXXXXXXXXXXXXXXXXXXXXXDEEMVGFGGSGGVAKQQAGMDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRGNMGMMGAANGMAGFGXXXXXXXXXXXXXXXXXVPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNGMMPGG----------------------------------PXXXXXXXXXXXXXXXXXXXXXXXXXXDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALGHL 1749
M+DEDA+FAEFMGEIKSTVVAAETKTA+DAGEDDGAASDAASVGDV+AD EGGGE RNHADTTKRR ETEASPSPAPKKPRFMGKLVAAA PVKAGAVAAASTA XXXXXXXXXXXXXXXXX T P PD+SGKG XXXXXXXXXXXXXXXX A G DEEMVGFGGSGGVAK +AGMDMHNNPS MGGGGPGTMPGNNNGMHMGAPPPG+RGNMG+MGA NGMAGFG XXXXXXXXXXX +PPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMN MM GG XXXXXXX XXXXXXXXX DKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXX KKALG L
Sbjct: 1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRR-ETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTARATGSGPKASTGDKGTAAAKKDPDGSGASAXXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXXXXXXXXXXXXXXXXXSERTPADGGDANGAGSKD-------------DEEMVGFGGSGGVAKHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPPPGIRGNMGVMGAGNGMAGFGGDGYXXXXXXXXXXXG-MPPGXXXXXXXXXXXXXXXXXGGPGPYPDGSMGYGYGGPMNVMMSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA) HSP 1 Score: 184 bits (466), Expect = 6.490e-48 Identity = 91/127 (71.65%), Postives = 103/127 (81.10%), Query Frame = 1 Query: 1369 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALGHL 1749
KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF Y SF KAKV+REK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK KKALG L
Sbjct: 235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA) HSP 1 Score: 165 bits (417), Expect = 6.760e-42 Identity = 86/131 (65.65%), Postives = 102/131 (77.86%), Query Frame = 1 Query: 1351 KAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
K+ + K R A G+ W D+TL EWPEND+RLFVGD+GNEVTDD L+ AF KY SFAKAKV+R+K+ KSKGYGF SF+D D KALRE GKY+GNRP+K+ KS W+ERD+KEVKK XXXXX K ALG
Sbjct: 167 KSATEKKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKKXXXXXXXRKAALG 297
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: T0QBK6_SAPDV (RRM domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QBK6_SAPDV) HSP 1 Score: 162 bits (410), Expect = 4.070e-41 Identity = 81/123 (65.85%), Postives = 93/123 (75.61%), Query Frame = 1 Query: 1339 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 1707
VA A++ S KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L+ AF Y SFA AKV+R+K KSKGYGFVSFLD D KA+RE GKY+GNRP+KISK W++R + VKKK
Sbjct: 150 VANAQSNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLSQAFSTYASFAMAKVVRDKLTHKSKGYGFVSFLDPFDAAKAMREMNGKYIGNRPVKISKGKWEDRAIDVVKKK 272
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA) HSP 1 Score: 160 bits (404), Expect = 4.280e-41 Identity = 79/122 (64.75%), Postives = 92/122 (75.41%), Query Frame = 1 Query: 1378 RVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
R AGGK+WED+TL EWPEND+RLFVGDLG + T L FRKY SFAKA++ R++ K + YGFVSFLDGMDM+KALREQ GKY GNRPMK+SKSTWKERD E++KK K LG
Sbjct: 96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLG 217
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.470e-40 Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 1 Query: 1357 ESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
++ K+ R AGG++WED TLAEW END+RLFVGDLG +VT L FR+Y SFAKAK+ R++ K + +GFVSFLDGMD +KA+REQQGKY G RPMKI +STWK+RDV+E+KKK +K LG
Sbjct: 36 KAPKKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLG 164
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA) HSP 1 Score: 159 bits (402), Expect = 4.600e-40 Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 1 Query: 1360 SSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKK 1707
S KF R A GK WED TL EWPENDYRLF GDLGNEV DD L+ AF +Y+SFA A+VIR+K KSKGYGFVSF+DG+D +KA+RE GKY+G+RP+KI+K W+ER ++ VKKK
Sbjct: 158 SDKKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKK 273
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A1V9YAQ1_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAQ1_9STRA) HSP 1 Score: 159 bits (401), Expect = 5.960e-40 Identity = 82/134 (61.19%), Postives = 93/134 (69.40%), Query Frame = 1 Query: 1339 VAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKAL 1740
VA A S KF RVA GK WED TLAEWPENDYRLF GDLGNEV D+ L AF Y+SFA AKV+R+K KS+GYGFVSFLD D KA+R+ GKY+GNRP+KISK W +R + VKKK KK L
Sbjct: 144 VANAAVNSDKKFLRVAAGKVWEDATLAEWPENDYRLFCGDLGNEVNDELLTQAFSTYSSFAMAKVVRDKLTHKSRGYGFVSFLDPFDAAKAMRDMNGKYIGNRPVKISKGKWADRALDVVKKKVKAGKKSKKHL 277
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA) HSP 1 Score: 155 bits (392), Expect = 6.350e-40 Identity = 78/134 (58.21%), Postives = 99/134 (73.88%), Query Frame = 1 Query: 1342 AKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXXKKALG 1743
A + ++S + R AGGK+W D++L WPEND+RLFVG+LGNEVTD+ ++ AF Y S AKAKVIREK++ KSKGYGFVSFLD D KALRE GKY+GNRP K+ +S WK+R +KEV+KK KK+ G
Sbjct: 47 APERPKASTQAIRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWG 180 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.427.1 >prot_E-siliculosus-1a_F_contig106.427.1 ID=prot_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=516bp MADEDALFAEFMGEIKSTVVAAETKTAADAGEDDGAASDAASVGDVKADDback to top mRNA from alignment at E-siliculosus-1a_F_contig106:46591..53952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig106.427.1 ID=mRNA_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=7362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:46591..53952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:46591..53952- >mRNA_E-siliculosus-1a_F_contig106.427.1 ID=mRNA_E-siliculosus-1a_F_contig106.427.1|Name=mRNA_E-siliculosus-1a_F_contig106.427.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3096bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:46591..53952- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |