mRNA_E-siliculosus-1a_F_contig106.426.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig106.426.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 1974 bits (5113), Expect = 0.000e+0 Identity = 1146/1291 (88.77%), Postives = 1181/1291 (91.48%), Query Frame = 3
Query: 234 MSAATFSNTANGGPSSPALSAPEIGGHHAAVAMAVAPXXXXXAAVGPAAGRDDNIVRALAFAEEPTAAILAQTANASSNIKGGSSSTNGGQGGERTAVSVFATEEDPESCVQPSRAAEDRSSGAAVGHHSGGAASATSRSPGVSASSGSTKASWRDRRLAASTTSSANGGRVGIAENGSATAGARGSDARVNRGTAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRQLEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVEAQLAEEMEPKEILLSDCLSSYQLLDTVDRKVDTVQRRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTKKGQASARGAVSPGASSVAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRTTKPPPEEHTAAQSRFDDCQQWSTQALPFEPHALKEYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGGRSGVSAGLDTGAGPRLSSMARSTYRWGLVAEPPPPAQKQQLTREQVPSKTEALPVQGAPNIPMMQEPATGSTGVEMPMTPQWFRQQQHHXXXXXXXXYVRFEQQRQQQLMXXXXXXXXXXXXYQRRDHISGDSFRPQLQLPPDSLLQSNLIQQGSKLGSLAAAHPTAAQGVAPASTPRGGGNPHALAPSSVPGDAMAKGGAGAMNEESVVWIASPSEGSSPLQVERSRIVGREFEEEAMNILWDARGQFGVALDIVRSKRYQDDLKRRLKNAGEIWTFQQVKAAVKSCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNSKRRGTAEAVTVAQGAAATXXXXXXXXXXXPKPGTYNDARPHNKRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXGSSVIFVRGXXXXXXXXXXXXXXRKVDVTPTTTT--------RSRKPTSPPLDPSPGVIHDLCSSDEEDEMQELSRKGPAAGSADAPAAGRSPGAAGRGDHEGHQTMAPATAAKVEAAAAARETRGVAAEAAARAEADGADVENGGPXXXXXXXXXXAGMPSACPKEARGGTMSTEREGDGIGVGSDVTPPARDDSPVPGVASGNTGGEAMAPRPQTETGSVLHVFMDRCKATLTPELFDKFVSALSQYREQRLAIGELVDVVGQCFNHLEEREVKLVKEFNSFLPPGHAVKITEA 4082
MSAATFSNTANGGPSSPALSAPEIGGHHAA+AMAVA XXXX GPAAGRDD+IVRALAFAEEPTAA+LAQTANASSNIK GSSST+GGQGGE T VSVFA EDPESC+QPSRAAED SSG AV HH+GGAASATSRSPG+SASSGST+ASW DRRLAASTTSSANGGRV IAEN SATA ARG DA+VNR TAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLR+LEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEV+AQLAE+MEPKEILLSDCLSSYQLLDTVDRKVDTV+ RPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPST+KGQAS+RGAVSPGASS AAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTR TKPPPEE+ AQSRFDDCQQWST+ALPFEP ALK+YLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGG RS VSAGLDTGAGPRL+SMARSTYRWGLVAEPPPPAQKQQLTREQVPS+TEAL VQGAPNIPMMQEPATG+TGV+M MTPQWFR+QQ +VRFE+QRQ QLMXXXXXXXXXXXXY RRDHISGDSFRPQLQLPP+SLLQSNLIQQGS LG LA AH AAQ VAPAS PRGGGNPHALAPSSVPGDAMAK AGA NEESVVWIASPSEGSSPLQVERSRIV REFEEEAMNILWDARGQFGVALDIV+SKRYQDDLKRRLKNAGEIWTFQQVKAAVK+CTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQN+KRRGTAEA TVAQG AAT PKPGTYNDARPH KRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXX RSRKPTSPPLDPS GVIHDLCSSDEED++ +LSRKGPAAGSADAP+AGRSPGA GRGDHEGHQ MAP TAAKVEAAAAARETRGVA EAAARAEADG DVENGGP XXXXXXXXXAGMPSACPKEA GGTMSTEREGDG GVGSD PPARDDSPVPGVASGNTGGEAMAPRPQ ETGSVLHVFMDRCKATLTPE FDKFVSALSQYREQRL+IGELVDVVGQCFNH EEREVKLVKEFNSFLPPG+AVKIT A
Sbjct: 1 MSAATFSNTANGGPSSPALSAPEIGGHHAAMAMAVAAAXXXXXXXGPAAGRDDDIVRALAFAEEPTAAVLAQTANASSNIKVGSSSTDGGQGGESTDVSVFAKAEDPESCLQPSRAAEDSSSGTAVRHHTGGAASATSRSPGLSASSGSTQASWHDRRLAASTTSSANGGRVEIAENRSATASARGLDAQVNRETAAGSVGAGDESDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRGKPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSSIMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRTKPPPEEYKVAQSRFDDCQQWSTEALPFEPDALKDYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRRPNGSGGARSVVSAGLDTGAGPRLTSMARSTYRWGLVAEPPPPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQ------HVRFEEQRQXQLMXXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNSLLQSNLIQQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVPGDAMAKE-AGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNTKRRGTAEAATVAQGVAATASTTAKRQR--PKPGTYNDARPHKKRARAGSSGSDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRKPTSPPLDPSLGVIHDLCSSDEEDDIHDLSRKGPAAGSADAPSAGRSPGAGGRGDHEGHQAMAPETAAKVEAAAAARETRGVAVEAAARAEADGVDVENGGPAXXXXXXXXXAGMPSACPKEACGGTMSTEREGDGSGVGSDAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITRA 1282 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig106.426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig106.426.1 >prot_E-siliculosus-1a_F_contig106.426.1 ID=prot_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1290bp MHTDDKMSAATFSNTANGGPSSPALSAPEIGGHHAAVAMAVAPAPSPAAAback to top mRNA from alignment at E-siliculosus-1a_F_contig106:28614..46435+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig106.426.1 ID=mRNA_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=17822bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:28614..46435+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig106:28614..46435+ >mRNA_E-siliculosus-1a_F_contig106.426.1 ID=mRNA_E-siliculosus-1a_F_contig106.426.1|Name=mRNA_E-siliculosus-1a_F_contig106.426.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7740bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig106:28614..46435+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |