prot_E-siliculosus-1a_F_contig1058.416.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1058.416.1
Unique Name	prot_E-siliculosus-1a_F_contig1058.416.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	181

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: A0A6H5JGG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG0_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 7.130e-110
Identity = 169/180 (93.89%), Postives = 176/180 (97.78%), Query Frame = 0

Query:    1 MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 180
            M+NSRTAVAGSTARLQPPEWAIFMVA+IADLVSAAGLLPVERLSLFRGLAVFLLY+EWALA ACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNA+AATANERAGVSTNVPHAGMGGN SAHR+SRH+QEG+VSGYDVSSVSGEEVVELSSWAAET SVGHDNSSS GARVRQRNPLR
Sbjct:    1 MKNSRTAVAGSTARLQPPEWAIFMVAIIADLVSAAGLLPVERLSLFRGLAVFLLYKEWALASACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNALAATANERAGVSTNVPHAGMGGNTSAHRHSRHSQEGKVSGYDVSSVSGEEVVELSSWAAETASVGHDNSSSSGARVRQRNPLR 180

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BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Match: D7G7L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L1_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 9.340e-105
Identity = 166/180 (92.22%), Postives = 169/180 (93.89%), Query Frame = 0

Query:    1 MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAATANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHDNSSSRGARVRQRNPLR 180
            M+NSRT VAG TARLQPPEWAIFMVAVIADLVSAAGLLP ERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAF ASAQERLNA+ ATANE AG+STNVP AGMGGN SAHR SRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGH NSSS GARVRQRNPLR
Sbjct:   78 MKNSRTQVAGITARLQPPEWAIFMVAVIADLVSAAGLLPAERLSLFRGLAVFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFNASAQERLNALVATANECAGLSTNVPQAGMGGNTSAHRESRHTQEGEVSGYDVSSVSGEEVVELSSWAAETTSVGHGNSSSSGARVRQRNPLR 257

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1058.416.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JGG0_9PHAE	7.130e-110	93.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7L1_ECTSI	9.340e-105	92.22	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..38
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 39..57
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 58..80
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 81..180
None	No IPR available	TMHMM	TMhelix		coord: 21..43
None	No IPR available	TMHMM	TMhelix		coord: 58..80

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1058	contig	E-siliculosus-1a_F_contig1058:29612..31813 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1058.416.1	mRNA_E-siliculosus-1a_F_contig1058.416.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig1058 28780..31844 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1058.416.1 ID=prot_E-siliculosus-1a_F_contig1058.416.1|Name=mRNA_E-siliculosus-1a_F_contig1058.416.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=181bp
MRNSRTAVAGSTARLQPPEWAIFMVAVIADLVSAAGLLPVERLSLFRGLA
VFLLYREWALAFACGFVLPRVVPLIAVCFLKQKWRAFKASAQERLNAVAA
TANERAGVSTNVPHAGMGGNISAHRNSRHTQEGEVSGYDVSSVSGEEVVE
LSSWAAETTSVGHDNSSSRGARVRQRNPLR*