mRNA_E-siliculosus-1a_F_contig10566.408.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10566.408.1
Unique NamemRNA_E-siliculosus-1a_F_contig10566.408.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10566.408.1 vs. uniprot
Match: D8LJ33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ33_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.590e-9
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:   46 GWSESKTAVGEIFYVNHKEKKTTWVRPK 129
            GWSESKTA GEIFYVNHKEKKTTWVRPK
Sbjct:  269 GWSESKTAGGEIFYVNHKEKKTTWVRPK 296
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10566.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ33_ECTSI1.590e-996.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10566contigE-siliculosus-1a_F_contig10566:374..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size129
Model size129
Exons1
Hectar predicted targeting categorysignal peptide
BRITEko00000,ko00001,ko03036
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsCOG5021@1,COG5271@1,KOG0940@2759,KOG1808@2759
EggNOG free text desc.ATPase activity
GOsGO:0000278,GO:0000281,GO:0000910,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005938,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0030029,GO:0030036,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051301,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099568,GO:1903047
KEGG Pathwayko04934,map04934
KEGG koko:K14961,ko:K19868
Seed eggNOG ortholog2880.D8LJ33
Seed ortholog evalue6e-08
Seed ortholog score62.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927558.3393378-CDS-E-siliculosus-1a_F_contig10566:373..5021622927558.3393378-CDS-E-siliculosus-1a_F_contig10566:373..502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10566 374..502 -
1696318585.202685-CDS-E-siliculosus-1a_F_contig10566:373..5021696318585.202685-CDS-E-siliculosus-1a_F_contig10566:373..502Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10566 374..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10566.408.1prot_E-siliculosus-1a_F_contig10566.408.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10566 374..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10566.408.1

>prot_E-siliculosus-1a_F_contig10566.408.1 ID=prot_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=43bp
PLPPIHLLLCFLPSAGWSESKTAVGEIFYVNHKEKKTTWVRPK
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mRNA from alignment at E-siliculosus-1a_F_contig10566:374..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10566.408.1 ID=mRNA_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=129bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10566:374..502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCTTCCGCCAATACATCTACTGCTCTGCTTCCTTCCTTCTGCAGGGTG
GAGCGAGAGCAAGACCGCGGTCGGCGAGATCTTCTACGTCAACCACAAGG
AGAAGAAGACGACCTGGGTCAGACCGAAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10566:374..502-

>mRNA_E-siliculosus-1a_F_contig10566.408.1 ID=mRNA_E-siliculosus-1a_F_contig10566.408.1|Name=mRNA_E-siliculosus-1a_F_contig10566.408.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=258bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10566:374..502- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCCCTTCCGCCAATACATCTACTGCTCTGCTTCCTTCCTTCTGCAGGGTG
GAGCGAGAGCAAGACCGCGGTCGGCGAGATCTTCTACGTCAACCACAAGG
AGAAGAAGACGACCTGGGTCAGACCGAAACCCCTTCCGCCAATACATCTA
CTGCTCTGCTTCCTTCCTTCTGCAGGGTGGAGCGAGAGCAAGACCGCGGT
CGGCGAGATCTTCTACGTCAACCACAAGGAGAAGAAGACGACCTGGGTCA
GACCGAAA
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