mRNA_E-siliculosus-1a_F_contig1056.406.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Start	1
Stop	1
Cds size	630
Model size	1149
Exons	7
Ec32 ortholog	Ec-21_000690.2
Ec32 ortholog description	Hypothetical protein
Hectar predicted targeting category	other localisation

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927557.5822465-UTR-E-siliculosus-1a_F_contig1056:29454..29514	1622927557.5822465-UTR-E-siliculosus-1a_F_contig1056:29454..29514	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1056 29455..29514 +
1696318584.916046-UTR-E-siliculosus-1a_F_contig1056:29454..29514	1696318584.916046-UTR-E-siliculosus-1a_F_contig1056:29454..29514	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1056 29455..29514 +
1622927557.7046936-UTR-E-siliculosus-1a_F_contig1056:33969..34428	1622927557.7046936-UTR-E-siliculosus-1a_F_contig1056:33969..34428	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1056 33970..34428 +
1696318585.00034-UTR-E-siliculosus-1a_F_contig1056:33969..34428	1696318585.00034-UTR-E-siliculosus-1a_F_contig1056:33969..34428	Ectocarpus siliculosus Ec863f_EcPH12_90f female	UTR	E-siliculosus-1a_F_contig1056 33970..34428 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927557.5960019-CDS-E-siliculosus-1a_F_contig1056:29514..29582	1622927557.5960019-CDS-E-siliculosus-1a_F_contig1056:29514..29582	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 29515..29582 +
1696318584.9268634-CDS-E-siliculosus-1a_F_contig1056:29514..29582	1696318584.9268634-CDS-E-siliculosus-1a_F_contig1056:29514..29582	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 29515..29582 +
1622927557.6116133-CDS-E-siliculosus-1a_F_contig1056:31304..31320	1622927557.6116133-CDS-E-siliculosus-1a_F_contig1056:31304..31320	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 31305..31320 +
1696318584.9344358-CDS-E-siliculosus-1a_F_contig1056:31304..31320	1696318584.9344358-CDS-E-siliculosus-1a_F_contig1056:31304..31320	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 31305..31320 +
1622927557.6237051-CDS-E-siliculosus-1a_F_contig1056:31705..31854	1622927557.6237051-CDS-E-siliculosus-1a_F_contig1056:31705..31854	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 31706..31854 +
1696318584.9431698-CDS-E-siliculosus-1a_F_contig1056:31705..31854	1696318584.9431698-CDS-E-siliculosus-1a_F_contig1056:31705..31854	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 31706..31854 +
1622927557.6405318-CDS-E-siliculosus-1a_F_contig1056:32154..32260	1622927557.6405318-CDS-E-siliculosus-1a_F_contig1056:32154..32260	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 32155..32260 +
1696318584.952338-CDS-E-siliculosus-1a_F_contig1056:32154..32260	1696318584.952338-CDS-E-siliculosus-1a_F_contig1056:32154..32260	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 32155..32260 +
1622927557.6546357-CDS-E-siliculosus-1a_F_contig1056:32924..32974	1622927557.6546357-CDS-E-siliculosus-1a_F_contig1056:32924..32974	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 32925..32974 +
1696318584.965803-CDS-E-siliculosus-1a_F_contig1056:32924..32974	1696318584.965803-CDS-E-siliculosus-1a_F_contig1056:32924..32974	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 32925..32974 +
1622927557.6728313-CDS-E-siliculosus-1a_F_contig1056:33359..33500	1622927557.6728313-CDS-E-siliculosus-1a_F_contig1056:33359..33500	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 33360..33500 +
1696318584.9755301-CDS-E-siliculosus-1a_F_contig1056:33359..33500	1696318584.9755301-CDS-E-siliculosus-1a_F_contig1056:33359..33500	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 33360..33500 +
1622927557.68904-CDS-E-siliculosus-1a_F_contig1056:33869..33969	1622927557.68904-CDS-E-siliculosus-1a_F_contig1056:33869..33969	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 33870..33969 +
1696318584.9892714-CDS-E-siliculosus-1a_F_contig1056:33869..33969	1696318584.9892714-CDS-E-siliculosus-1a_F_contig1056:33869..33969	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1056 33870..33969 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1056.406.1	prot_E-siliculosus-1a_F_contig1056.406.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1056 29515..33969 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1056:29455..34428+
coding sequence from alignment at E-siliculosus-1a_F_contig1056:29455..34428+

protein sequence of mRNA_E-siliculosus-1a_F_contig1056.406.1

>prot_E-siliculosus-1a_F_contig1056.406.1 ID=prot_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=210bp
MEPKEPSHGKEMEEELMLPTQISIVHKQDEAGCLRPSGLWSCWFPISERR
SFNWIAENAIIENKAFLMPFDPRSCACCETYDVSSMELLDTGKFLPCCHG
CGSPCGPRGYATQEDLCKGCFCVDCSGVYKCLLHPFCGEFVFTVPCENGS
ERFRTATMIPCLYYPVGCCLADSVAYRAVLMKQVAHAQGIALTDNQRRAV
PPLANEMTR*

mRNA from alignment at E-siliculosus-1a_F_contig1056:29455..34428+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1056.406.1 ID=mRNA_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4974bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:29455..34428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTCAGGCGCAGTAGCTCGACTACACAGCAGTGGAGCAGCAGTCGCGTCA
AAAGAGCAGCATGGAACCAAAAGAGCCAAGTCATGGGAAGGAAATGGAAG
AGGAGCTGATGCTTCCGACCCAGATCAGGTACTTGTACAAGACAAGGTTG
ATGTACTGCTGTAGACATAGGCAATAGCGCAGGATAGCTCGGTTTCCCCG
CATGTCCATCTTTACTGACCTCCACCCTACCCTCTGATGTGTACATAGTC
TACAGCAGTTGACAGGCGCAGCTATTCGCACCCTGTTGCTGCTGTACGCA
TGTTGCTGCTGTACGCAAAAGGATGAGAGTGTCGATACGTTGCCCGCTCA
TGAGATAGCACATCTGCTTTGTGTATTTGGTTTACAGGGAGGGTGGTATT
CTACGTATTTTCAATAACCCTTCCGAACAAATTATGCACCGGCTTAACCT
TTAATAAGGTTTGGATGGGCTATCCCTCCCACACAAACGTTATATCACTG
GAGGACACCACATGGACAAGGTGTAATGCGTGTTCGCATGCTTGTACCTG
CTGCCGAGGCTTACAGAACGGGCCCGCAACTAAAAGGGCTAAGAAACACA
GCTAATCTCGGCCACAACATAAGAAACGCCTCAATAAGAAACATGATCGT
GCGATACCCCCAAGACAAAAGAAACAAGGGGGGTAGCTGGGGTTGTGTGT
CCAATAACAAAGGTCCCACTGCTGCTGCTGCTGCGGCTGCTGCTGCCATG
CTCCCACCCCCTACCTAGCTCATGTTATGTAATTCTGTGGTAGGGGGGGA
CGACAGTGGATATTTTCGGGGCGCCCGCCGCGCCCCCGCACCCCCGGAGG
CTGCGCTACCCACTGCCACAACCCAACGGCCACACCGAACTGTGGGTTTA
GACGAATGCTCATGAAGGCTTGGTGGGTTGTTGCTGTTTTCTTCGCCAGA
AAGGAGAAATAATAGGTTCAGCAAAATGCGACAGCCCCAAGGATTAAAAA
ATCTTAAGTCGGCCGGTGTTTCTGCCCAAACTAGAAAATTGAGGCTCGAC
CCGAATTTGACGTTTCTTATCTCCGGGCCCGTTCTGTACATAGTTGTGAG
CACCGCAGACCGCAGTAGTTTCAGAACTACGAAATCTGGGCCGACAACAA
ACATCAACTGCTGTGTTCGCTACCCTAGGCCCCAACCTCATCATCCGCGA
TACCTCTGCAGCAGCTAGTGGTGCAAACTGCTGCTGAGCACCCGCACTAC
AGTTGCAAGCACAGCAGTGCATGACGTTGTAGACCCAGACGTGCGGAGGT
TTGACATACTGTTTTGTTTGCTCGACAACCCCGACCCAGCAGAAGATATA
AGCCTGCGAACGCGCATCACATCTTCTCCATAGTCCTCTGTGATACAAAC
TTTTCATTTCGATGGGTTTCCCAACCCAAACCTTCTTATGTCCGTCCGAA
AAATGACATTTCGTGCCTTGAGTTTTTCGAGTAGGCGCAAAAACATAATA
ACTTCAGACTGTAGCTCGTTGGAGGTAGACCACGTGGCATATACGTAAAG
ATTAGCCGAGCTCGCCGTCATATAAGCGAACCGACACGTTTTTTCTTGCG
AACGCTTCCCTACTAGACTGGTGGAGCTGCCGTGTGAATGAGGTGTAATG
TCTCGGGCATTTCCAGACTTGCCAAGCTCCAAAATTGCCTGTCACCTCTT
CTTAGTCCAGGTGACGGGAGCGCCGTCAGCCCGCCCCCGTGACACCCTTG
TACTAACTCTACGGTCATCCTGCCTTTTTGTGCTTTGCCCGGGCGCATTG
TTACGATCTGGCGCTGCTCCCGCTCCATCATGCTGAACACTGTCACCAAG
CATTGTTCACAAGCAGGCGAGTCGTGAGGCTTTTTCGGTTGAAATTTTCT
GGGAGTTTGACTACAATTGCTTTATTTAGTGTTCCAGCTACTGCAGTACC
CATTTAGTACCCAACGTGCAGGTGCCACAACCAGCCGTGGTAAATATTCA
CCTCCAGCTCGTCCGCTGAACCCCTGCCCCTTCCCCCATGCTGTAGATAA
ATATCATCTGGTCGATTCTTGCTGTAGACTAGACTATATCGCACCCTCGT
TGTGGCAGACATCTTTTGGTAGAACTTACACACACACAGTAACCATGGTG
CACATGACGTGGCAAGCACGCCAACACTCTCCCGAGCATCGTACAACACC
CGGCGCGAAAATTAACGTCGAAACGTTCACCCACTGCTGTGCCAACAACA
GGACGAGGCCGGCTGCCTACGGCCGTCCGGCTTGTGGTCCTGTTGGTTTC
CAATATCGGAAAGGCGGAGCTTCAACTGGATCGCGGAAAACGCCATAATC
GAGAACAAGGCTTTCTTGATGCCGTTCGATCCGCGCAGCTGCGCCTGTTG
GTGAGTTCATTTTCGCCCAAACTTTAGGCGGCGTCGTCGGTTCAGGCGGA
CCTGTGTTTGGATGAAGGCGGCCCCGACCATACCCAAGTTTGATATGCTA
AGGAGAAATAGCCCTTCTGTATTTCGCAAGGAAGGCAATCCCACTATTGT
ACACAGGTTGACCTTTCTTCTAAACTTGGCTCCCGTACTCTCAACACCAC
GCACATCAACCTTCGATCTGAAATGCAAACCAGGAGACACATAGGTACGC
CCACGTTTGTTTGTCATGCTGGATATTGGCCCCCCTCCGTCGCGTTGCAG
TGAGACGTATGATGTCAGTTCAATGGAGCTCCTGGACACCGGAAAATTTC
TCCCGTGCTGCCATGGCTGCGGGTCGCCGTGCGGCCCGCGAGGATACGCC
ACTCAGGCAAGACTACATAGCTTGCCTGGCAGCATGAACTGCTGTCCCTC
CACGCTGAGCAGCCGTTGCGACCCCGAGACGTGTCGTATTTCACTCATGG
CTCATTGGGTGGCTAAGTTACGTTGGTCACATGCACACGTCCTGCCTGAT
GGTCTTGCTGTCATCGGCCGGCGATCTCTCTGCCACGTGCATGTTCGGGT
GGCTCTTTGAGAGAATTCGATTGTGAGGCAGGCTGGGACTCCCGTGCCTT
TGGTAATCGTCGGTGATCAACTAGATTTCCTAAGCGCCCAGACGGTAGAT
TTTTCACCCTGTTCCCGGTCCGTGAAACCAGGATGAAGAGGAGGCGGAGC
ACGCCCGGCCGGAGTGCCGTTTGTTCATGTGTTTATGTACTTTTGTTCCA
CCTTTGAGTTGTAGGGGGGCACAGCACGAGGAAAAGGCACGTCTTTTTTA
TGTATTTTTGTTCTGTGTTTGGGCACAGTAGGAGGAAATCGCACATAGTG
TATGTCGTAGTGGTGATTCCAGTGTTGGCGCGCTGGTGATCGGTTCTTCG
TTGGCGGGTGTAGTCCATCCCGCCCGTATCACTGCTTGCAGTACGGAGTT
ATAGCCAGGCGACTACTCCTTTCAAGCTCTCCTAACACGGTCCACCTCGT
GTGTTGTCCGTGTGCTCCAGGAGGACCTGTGCAAGGGTTGCTTCTGCGTC
GATTGCAGCGGGGTGTACAAGTGAGGAAAAAGCGCCGAACTAGTGCATCC
TAGAGAAATTCGATAACGAACGTGTATATGCGGTCTGTCTACGAACATGT
AAGTTTCTTCGAAACACAACCCATACCCCATATGCCAACACTTCTTTGCC
TTTCCAGATGTTGCATTTATGGTCAAACAAACCGTGGTGAAGTTTGCATA
TGTAGCTGGACAACCTGCAGAATATTGGTACTTCGCCCGATATTATTGGA
TACACTTGTATGCGACAGCAATGTAATTAGGCGATAACAACCTTTCGCTC
GATGCGTGCAGCGCACCCTATTAGCTTTCACAAATCCGTCGCTCCTTCTA
CTCCTTCCCCTCTCGGCCGTCGTTTACCCTCTGAATACCTGGAACAATTC
AACAGATGCCTCCTACATCCTTTCTGCGGGGAGTTCGTTTTCACGGTGCC
GTGCGAAAACGGCTCTGAACGCTTCAGAACCGCCACAATGATACCTTGTC
TGTACTACCCGGTCGGCTGCTGCCTGGCGGACAGTGTGGCTTACCGGTGC
GAGGCTTCGCTTGACTTTCGACGTCGGTTATTGTTATGATGTTGCGTTTT
TTCGAGCGTGTCTCAGCCCCGTGCTACTCTCGTCCAACTTCTCTGTTTCG
TTCGAGCTGTGCTGTATGCTACTGCCGTGGGAAAAGCACAGTCAAAGTCT
TCCCTGGTTTGAGTTCCGAGTGAAGGCGGTTGGCACAACAAAAAGCATCG
CTGCCAAACTTTTGCGCCTTCAACCTATTGATCACCACAAAATAGCTTCG
ATGACCCCGTTTGTCTCTGCAGGCTATATATTTAACGTTGTTCCTGATGC
TCTTTCCCCACTCGCCTACCCCTCGCCAACCACTTCCTCTCCCCTTTCCG
TTCTGCTGCTCTAAGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAG
GCATTGCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAAC
GAAATGACGCGATAGAGGTATGGGCAAGCGGTCTCGAGCGAGCCTGCATT
TACACGGAGAGGACGCTCTTCTACGCTGCTCCCTTGCCGAGAGAAACTTT
GTCTGCCTCTGTGTTGTTTATTTGCCTGCGAGAGAGCGCGCTTCAAGATG
TTTGAAGAACCAATCGCGAGAAGAGCAGATTGACGACTGCAGCTTGTCGC
GCTCTCAACTGGACGGGTTGCTCTAGATGAGGGATCGACGGGTGGTAGAC
AGTGTAGACCAGACGCTCGCCGATCGCAACGGCCGGTGCCTCGTGTATGG
TACGTCTTGTGTCTATGGTCCTAGTATGTCCATGTCCATGTTTCTAGATC
GTCCGTCGCGCAGTAAAGTAAGTTTTTCTGCTGCTGAGGTTCAAATACAC
TGTTGTGCACGTTGCCGCTCTATTGGAAGAATGTCTTGTTTGATTGATGG
GGGGGAAGAACAGGGCTTTTGACG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1056:29455..34428+

>mRNA_E-siliculosus-1a_F_contig1056.406.1 ID=mRNA_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:29455..34428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAACCAAAAGAGCCAAGTCATGGGAAGGAAATGGAAGAGGAGCTGAT
GCTTCCGACCCAGATCAGATGGAACCAAAAGAGCCAAGTCATGGGAAGGA
AATGGAAGAGGAGCTGATGCTTCCGACCCAGATCAGCATTGTTCACAAGC
AGCATTGTTCACAAGCAGGACGAGGCCGGCTGCCTACGGCCGTCCGGCTT
GTGGTCCTGTTGGTTTCCAATATCGGAAAGGCGGAGCTTCAACTGGATCG
CGGAAAACGCCATAATCGAGAACAAGGCTTTCTTGATGCCGTTCGATCCG
CGCAGCTGCGCCTGTTGGACGAGGCCGGCTGCCTACGGCCGTCCGGCTTG
TGGTCCTGTTGGTTTCCAATATCGGAAAGGCGGAGCTTCAACTGGATCGC
GGAAAACGCCATAATCGAGAACAAGGCTTTCTTGATGCCGTTCGATCCGC
GCAGCTGCGCCTGTTGTGAGACGTATGATGTCAGTTCAATGGAGCTCCTG
GACACCGGAAAATTTCTCCCGTGCTGCCATGGCTGCGGGTCGCCGTGCGG
CCCGCGAGGATACGCCACTCAGTGAGACGTATGATGTCAGTTCAATGGAG
CTCCTGGACACCGGAAAATTTCTCCCGTGCTGCCATGGCTGCGGGTCGCC
GTGCGGCCCGCGAGGATACGCCACTCAGGAGGACCTGTGCAAGGGTTGCT
TCTGCGTCGATTGCAGCGGGGTGTACAAGAGGACCTGTGCAAGGGTTGCT
TCTGCGTCGATTGCAGCGGGGTGTACAAATGCCTCCTACATCCTTTCTGC
GGGGAGTTCGTTTTCACGGTGCCGTGCGAAAACGGCTCTGAACGCTTCAG
AACCGCCACAATGATACCTTGTCTGTACTACCCGGTCGGCTGCTGCCTGG
CGGACAGTGTGGCTTACCGATGCCTCCTACATCCTTTCTGCGGGGAGTTC
GTTTTCACGGTGCCGTGCGAAAACGGCTCTGAACGCTTCAGAACCGCCAC
AATGATACCTTGTCTGTACTACCCGGTCGGCTGCTGCCTGGCGGACAGTG
TGGCTTACCGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAGGCATT
GCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAACGAAAT
GACGCGATAGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAGGCATT
GCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAACGAAAT
GACGCGATAG

mRNA_E-siliculosus-1a_F_contig1056.406.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

ZOOM

x 1

POSITION

0