mRNA_E-siliculosus-1a_F_contig1056.406.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1056.406.1
Unique NamemRNA_E-siliculosus-1a_F_contig1056.406.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1056.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1056contigE-siliculosus-1a_F_contig1056:29455..34428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size630
Model size1149
Exons7
Ec32 orthologEc-21_000690.2
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.5822465-UTR-E-siliculosus-1a_F_contig1056:29454..295141622927557.5822465-UTR-E-siliculosus-1a_F_contig1056:29454..29514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1056 29455..29514 +
1696318584.916046-UTR-E-siliculosus-1a_F_contig1056:29454..295141696318584.916046-UTR-E-siliculosus-1a_F_contig1056:29454..29514Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1056 29455..29514 +
1622927557.7046936-UTR-E-siliculosus-1a_F_contig1056:33969..344281622927557.7046936-UTR-E-siliculosus-1a_F_contig1056:33969..34428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1056 33970..34428 +
1696318585.00034-UTR-E-siliculosus-1a_F_contig1056:33969..344281696318585.00034-UTR-E-siliculosus-1a_F_contig1056:33969..34428Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1056 33970..34428 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927557.5960019-CDS-E-siliculosus-1a_F_contig1056:29514..295821622927557.5960019-CDS-E-siliculosus-1a_F_contig1056:29514..29582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 29515..29582 +
1696318584.9268634-CDS-E-siliculosus-1a_F_contig1056:29514..295821696318584.9268634-CDS-E-siliculosus-1a_F_contig1056:29514..29582Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 29515..29582 +
1622927557.6116133-CDS-E-siliculosus-1a_F_contig1056:31304..313201622927557.6116133-CDS-E-siliculosus-1a_F_contig1056:31304..31320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 31305..31320 +
1696318584.9344358-CDS-E-siliculosus-1a_F_contig1056:31304..313201696318584.9344358-CDS-E-siliculosus-1a_F_contig1056:31304..31320Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 31305..31320 +
1622927557.6237051-CDS-E-siliculosus-1a_F_contig1056:31705..318541622927557.6237051-CDS-E-siliculosus-1a_F_contig1056:31705..31854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 31706..31854 +
1696318584.9431698-CDS-E-siliculosus-1a_F_contig1056:31705..318541696318584.9431698-CDS-E-siliculosus-1a_F_contig1056:31705..31854Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 31706..31854 +
1622927557.6405318-CDS-E-siliculosus-1a_F_contig1056:32154..322601622927557.6405318-CDS-E-siliculosus-1a_F_contig1056:32154..32260Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 32155..32260 +
1696318584.952338-CDS-E-siliculosus-1a_F_contig1056:32154..322601696318584.952338-CDS-E-siliculosus-1a_F_contig1056:32154..32260Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 32155..32260 +
1622927557.6546357-CDS-E-siliculosus-1a_F_contig1056:32924..329741622927557.6546357-CDS-E-siliculosus-1a_F_contig1056:32924..32974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 32925..32974 +
1696318584.965803-CDS-E-siliculosus-1a_F_contig1056:32924..329741696318584.965803-CDS-E-siliculosus-1a_F_contig1056:32924..32974Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 32925..32974 +
1622927557.6728313-CDS-E-siliculosus-1a_F_contig1056:33359..335001622927557.6728313-CDS-E-siliculosus-1a_F_contig1056:33359..33500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 33360..33500 +
1696318584.9755301-CDS-E-siliculosus-1a_F_contig1056:33359..335001696318584.9755301-CDS-E-siliculosus-1a_F_contig1056:33359..33500Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 33360..33500 +
1622927557.68904-CDS-E-siliculosus-1a_F_contig1056:33869..339691622927557.68904-CDS-E-siliculosus-1a_F_contig1056:33869..33969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 33870..33969 +
1696318584.9892714-CDS-E-siliculosus-1a_F_contig1056:33869..339691696318584.9892714-CDS-E-siliculosus-1a_F_contig1056:33869..33969Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1056 33870..33969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1056.406.1prot_E-siliculosus-1a_F_contig1056.406.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1056 29515..33969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1056.406.1

>prot_E-siliculosus-1a_F_contig1056.406.1 ID=prot_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=210bp
MEPKEPSHGKEMEEELMLPTQISIVHKQDEAGCLRPSGLWSCWFPISERR
SFNWIAENAIIENKAFLMPFDPRSCACCETYDVSSMELLDTGKFLPCCHG
CGSPCGPRGYATQEDLCKGCFCVDCSGVYKCLLHPFCGEFVFTVPCENGS
ERFRTATMIPCLYYPVGCCLADSVAYRAVLMKQVAHAQGIALTDNQRRAV
PPLANEMTR*
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mRNA from alignment at E-siliculosus-1a_F_contig1056:29455..34428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1056.406.1 ID=mRNA_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4974bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:29455..34428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTTCAGGCGCAGTAGCTCGACTACACAGCAGTGGAGCAGCAGTCGCGTCA
AAAGAGCAGCATGGAACCAAAAGAGCCAAGTCATGGGAAGGAAATGGAAG
AGGAGCTGATGCTTCCGACCCAGATCAGGTACTTGTACAAGACAAGGTTG
ATGTACTGCTGTAGACATAGGCAATAGCGCAGGATAGCTCGGTTTCCCCG
CATGTCCATCTTTACTGACCTCCACCCTACCCTCTGATGTGTACATAGTC
TACAGCAGTTGACAGGCGCAGCTATTCGCACCCTGTTGCTGCTGTACGCA
TGTTGCTGCTGTACGCAAAAGGATGAGAGTGTCGATACGTTGCCCGCTCA
TGAGATAGCACATCTGCTTTGTGTATTTGGTTTACAGGGAGGGTGGTATT
CTACGTATTTTCAATAACCCTTCCGAACAAATTATGCACCGGCTTAACCT
TTAATAAGGTTTGGATGGGCTATCCCTCCCACACAAACGTTATATCACTG
GAGGACACCACATGGACAAGGTGTAATGCGTGTTCGCATGCTTGTACCTG
CTGCCGAGGCTTACAGAACGGGCCCGCAACTAAAAGGGCTAAGAAACACA
GCTAATCTCGGCCACAACATAAGAAACGCCTCAATAAGAAACATGATCGT
GCGATACCCCCAAGACAAAAGAAACAAGGGGGGTAGCTGGGGTTGTGTGT
CCAATAACAAAGGTCCCACTGCTGCTGCTGCTGCGGCTGCTGCTGCCATG
CTCCCACCCCCTACCTAGCTCATGTTATGTAATTCTGTGGTAGGGGGGGA
CGACAGTGGATATTTTCGGGGCGCCCGCCGCGCCCCCGCACCCCCGGAGG
CTGCGCTACCCACTGCCACAACCCAACGGCCACACCGAACTGTGGGTTTA
GACGAATGCTCATGAAGGCTTGGTGGGTTGTTGCTGTTTTCTTCGCCAGA
AAGGAGAAATAATAGGTTCAGCAAAATGCGACAGCCCCAAGGATTAAAAA
ATCTTAAGTCGGCCGGTGTTTCTGCCCAAACTAGAAAATTGAGGCTCGAC
CCGAATTTGACGTTTCTTATCTCCGGGCCCGTTCTGTACATAGTTGTGAG
CACCGCAGACCGCAGTAGTTTCAGAACTACGAAATCTGGGCCGACAACAA
ACATCAACTGCTGTGTTCGCTACCCTAGGCCCCAACCTCATCATCCGCGA
TACCTCTGCAGCAGCTAGTGGTGCAAACTGCTGCTGAGCACCCGCACTAC
AGTTGCAAGCACAGCAGTGCATGACGTTGTAGACCCAGACGTGCGGAGGT
TTGACATACTGTTTTGTTTGCTCGACAACCCCGACCCAGCAGAAGATATA
AGCCTGCGAACGCGCATCACATCTTCTCCATAGTCCTCTGTGATACAAAC
TTTTCATTTCGATGGGTTTCCCAACCCAAACCTTCTTATGTCCGTCCGAA
AAATGACATTTCGTGCCTTGAGTTTTTCGAGTAGGCGCAAAAACATAATA
ACTTCAGACTGTAGCTCGTTGGAGGTAGACCACGTGGCATATACGTAAAG
ATTAGCCGAGCTCGCCGTCATATAAGCGAACCGACACGTTTTTTCTTGCG
AACGCTTCCCTACTAGACTGGTGGAGCTGCCGTGTGAATGAGGTGTAATG
TCTCGGGCATTTCCAGACTTGCCAAGCTCCAAAATTGCCTGTCACCTCTT
CTTAGTCCAGGTGACGGGAGCGCCGTCAGCCCGCCCCCGTGACACCCTTG
TACTAACTCTACGGTCATCCTGCCTTTTTGTGCTTTGCCCGGGCGCATTG
TTACGATCTGGCGCTGCTCCCGCTCCATCATGCTGAACACTGTCACCAAG
CATTGTTCACAAGCAGGCGAGTCGTGAGGCTTTTTCGGTTGAAATTTTCT
GGGAGTTTGACTACAATTGCTTTATTTAGTGTTCCAGCTACTGCAGTACC
CATTTAGTACCCAACGTGCAGGTGCCACAACCAGCCGTGGTAAATATTCA
CCTCCAGCTCGTCCGCTGAACCCCTGCCCCTTCCCCCATGCTGTAGATAA
ATATCATCTGGTCGATTCTTGCTGTAGACTAGACTATATCGCACCCTCGT
TGTGGCAGACATCTTTTGGTAGAACTTACACACACACAGTAACCATGGTG
CACATGACGTGGCAAGCACGCCAACACTCTCCCGAGCATCGTACAACACC
CGGCGCGAAAATTAACGTCGAAACGTTCACCCACTGCTGTGCCAACAACA
GGACGAGGCCGGCTGCCTACGGCCGTCCGGCTTGTGGTCCTGTTGGTTTC
CAATATCGGAAAGGCGGAGCTTCAACTGGATCGCGGAAAACGCCATAATC
GAGAACAAGGCTTTCTTGATGCCGTTCGATCCGCGCAGCTGCGCCTGTTG
GTGAGTTCATTTTCGCCCAAACTTTAGGCGGCGTCGTCGGTTCAGGCGGA
CCTGTGTTTGGATGAAGGCGGCCCCGACCATACCCAAGTTTGATATGCTA
AGGAGAAATAGCCCTTCTGTATTTCGCAAGGAAGGCAATCCCACTATTGT
ACACAGGTTGACCTTTCTTCTAAACTTGGCTCCCGTACTCTCAACACCAC
GCACATCAACCTTCGATCTGAAATGCAAACCAGGAGACACATAGGTACGC
CCACGTTTGTTTGTCATGCTGGATATTGGCCCCCCTCCGTCGCGTTGCAG
TGAGACGTATGATGTCAGTTCAATGGAGCTCCTGGACACCGGAAAATTTC
TCCCGTGCTGCCATGGCTGCGGGTCGCCGTGCGGCCCGCGAGGATACGCC
ACTCAGGCAAGACTACATAGCTTGCCTGGCAGCATGAACTGCTGTCCCTC
CACGCTGAGCAGCCGTTGCGACCCCGAGACGTGTCGTATTTCACTCATGG
CTCATTGGGTGGCTAAGTTACGTTGGTCACATGCACACGTCCTGCCTGAT
GGTCTTGCTGTCATCGGCCGGCGATCTCTCTGCCACGTGCATGTTCGGGT
GGCTCTTTGAGAGAATTCGATTGTGAGGCAGGCTGGGACTCCCGTGCCTT
TGGTAATCGTCGGTGATCAACTAGATTTCCTAAGCGCCCAGACGGTAGAT
TTTTCACCCTGTTCCCGGTCCGTGAAACCAGGATGAAGAGGAGGCGGAGC
ACGCCCGGCCGGAGTGCCGTTTGTTCATGTGTTTATGTACTTTTGTTCCA
CCTTTGAGTTGTAGGGGGGCACAGCACGAGGAAAAGGCACGTCTTTTTTA
TGTATTTTTGTTCTGTGTTTGGGCACAGTAGGAGGAAATCGCACATAGTG
TATGTCGTAGTGGTGATTCCAGTGTTGGCGCGCTGGTGATCGGTTCTTCG
TTGGCGGGTGTAGTCCATCCCGCCCGTATCACTGCTTGCAGTACGGAGTT
ATAGCCAGGCGACTACTCCTTTCAAGCTCTCCTAACACGGTCCACCTCGT
GTGTTGTCCGTGTGCTCCAGGAGGACCTGTGCAAGGGTTGCTTCTGCGTC
GATTGCAGCGGGGTGTACAAGTGAGGAAAAAGCGCCGAACTAGTGCATCC
TAGAGAAATTCGATAACGAACGTGTATATGCGGTCTGTCTACGAACATGT
AAGTTTCTTCGAAACACAACCCATACCCCATATGCCAACACTTCTTTGCC
TTTCCAGATGTTGCATTTATGGTCAAACAAACCGTGGTGAAGTTTGCATA
TGTAGCTGGACAACCTGCAGAATATTGGTACTTCGCCCGATATTATTGGA
TACACTTGTATGCGACAGCAATGTAATTAGGCGATAACAACCTTTCGCTC
GATGCGTGCAGCGCACCCTATTAGCTTTCACAAATCCGTCGCTCCTTCTA
CTCCTTCCCCTCTCGGCCGTCGTTTACCCTCTGAATACCTGGAACAATTC
AACAGATGCCTCCTACATCCTTTCTGCGGGGAGTTCGTTTTCACGGTGCC
GTGCGAAAACGGCTCTGAACGCTTCAGAACCGCCACAATGATACCTTGTC
TGTACTACCCGGTCGGCTGCTGCCTGGCGGACAGTGTGGCTTACCGGTGC
GAGGCTTCGCTTGACTTTCGACGTCGGTTATTGTTATGATGTTGCGTTTT
TTCGAGCGTGTCTCAGCCCCGTGCTACTCTCGTCCAACTTCTCTGTTTCG
TTCGAGCTGTGCTGTATGCTACTGCCGTGGGAAAAGCACAGTCAAAGTCT
TCCCTGGTTTGAGTTCCGAGTGAAGGCGGTTGGCACAACAAAAAGCATCG
CTGCCAAACTTTTGCGCCTTCAACCTATTGATCACCACAAAATAGCTTCG
ATGACCCCGTTTGTCTCTGCAGGCTATATATTTAACGTTGTTCCTGATGC
TCTTTCCCCACTCGCCTACCCCTCGCCAACCACTTCCTCTCCCCTTTCCG
TTCTGCTGCTCTAAGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAG
GCATTGCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAAC
GAAATGACGCGATAGAGGTATGGGCAAGCGGTCTCGAGCGAGCCTGCATT
TACACGGAGAGGACGCTCTTCTACGCTGCTCCCTTGCCGAGAGAAACTTT
GTCTGCCTCTGTGTTGTTTATTTGCCTGCGAGAGAGCGCGCTTCAAGATG
TTTGAAGAACCAATCGCGAGAAGAGCAGATTGACGACTGCAGCTTGTCGC
GCTCTCAACTGGACGGGTTGCTCTAGATGAGGGATCGACGGGTGGTAGAC
AGTGTAGACCAGACGCTCGCCGATCGCAACGGCCGGTGCCTCGTGTATGG
TACGTCTTGTGTCTATGGTCCTAGTATGTCCATGTCCATGTTTCTAGATC
GTCCGTCGCGCAGTAAAGTAAGTTTTTCTGCTGCTGAGGTTCAAATACAC
TGTTGTGCACGTTGCCGCTCTATTGGAAGAATGTCTTGTTTGATTGATGG
GGGGGAAGAACAGGGCTTTTGACG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1056:29455..34428+

>mRNA_E-siliculosus-1a_F_contig1056.406.1 ID=mRNA_E-siliculosus-1a_F_contig1056.406.1|Name=mRNA_E-siliculosus-1a_F_contig1056.406.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1260bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1056:29455..34428+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAACCAAAAGAGCCAAGTCATGGGAAGGAAATGGAAGAGGAGCTGAT
GCTTCCGACCCAGATCAGATGGAACCAAAAGAGCCAAGTCATGGGAAGGA
AATGGAAGAGGAGCTGATGCTTCCGACCCAGATCAGCATTGTTCACAAGC
AGCATTGTTCACAAGCAGGACGAGGCCGGCTGCCTACGGCCGTCCGGCTT
GTGGTCCTGTTGGTTTCCAATATCGGAAAGGCGGAGCTTCAACTGGATCG
CGGAAAACGCCATAATCGAGAACAAGGCTTTCTTGATGCCGTTCGATCCG
CGCAGCTGCGCCTGTTGGACGAGGCCGGCTGCCTACGGCCGTCCGGCTTG
TGGTCCTGTTGGTTTCCAATATCGGAAAGGCGGAGCTTCAACTGGATCGC
GGAAAACGCCATAATCGAGAACAAGGCTTTCTTGATGCCGTTCGATCCGC
GCAGCTGCGCCTGTTGTGAGACGTATGATGTCAGTTCAATGGAGCTCCTG
GACACCGGAAAATTTCTCCCGTGCTGCCATGGCTGCGGGTCGCCGTGCGG
CCCGCGAGGATACGCCACTCAGTGAGACGTATGATGTCAGTTCAATGGAG
CTCCTGGACACCGGAAAATTTCTCCCGTGCTGCCATGGCTGCGGGTCGCC
GTGCGGCCCGCGAGGATACGCCACTCAGGAGGACCTGTGCAAGGGTTGCT
TCTGCGTCGATTGCAGCGGGGTGTACAAGAGGACCTGTGCAAGGGTTGCT
TCTGCGTCGATTGCAGCGGGGTGTACAAATGCCTCCTACATCCTTTCTGC
GGGGAGTTCGTTTTCACGGTGCCGTGCGAAAACGGCTCTGAACGCTTCAG
AACCGCCACAATGATACCTTGTCTGTACTACCCGGTCGGCTGCTGCCTGG
CGGACAGTGTGGCTTACCGATGCCTCCTACATCCTTTCTGCGGGGAGTTC
GTTTTCACGGTGCCGTGCGAAAACGGCTCTGAACGCTTCAGAACCGCCAC
AATGATACCTTGTCTGTACTACCCGGTCGGCTGCTGCCTGGCGGACAGTG
TGGCTTACCGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAGGCATT
GCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAACGAAAT
GACGCGATAGAGCCGTGTTGATGAAGCAAGTGGCCCACGCGCAAGGCATT
GCCCTTACAGACAACCAAAGGCGGGCGGTACCTCCGCTAGCGAACGAAAT
GACGCGATAG
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