Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A6H5JTY8_9PHAE (CP-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTY8_9PHAE)
HSP 1 Score: 166 bits (419), Expect = 2.340e-46
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTV+
Sbjct: 231 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVK 316
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A836CE27_9STRA (Nug1, nuclear ribosome-associated GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE27_9STRA)
HSP 1 Score: 133 bits (334), Expect = 2.550e-34
Identity = 65/86 (75.58%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G A+KA L+RSG++G EALM +LKNYCRSL++KTAITVG+IGYPNVGKSSLINSLKRSKAVGVS TPGFTK+MQE+ LDK V+
Sbjct: 231 GDANKAGAAALSRSGSIGAEALMNILKNYCRSLDIKTAITVGIIGYPNVGKSSLINSLKRSKAVGVSPTPGFTKAMQEVQLDKLVK 316
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A4D9DAV5_9STRA (CP-type G domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAV5_9STRA)
HSP 1 Score: 120 bits (301), Expect = 9.050e-30
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G A KA +L+RSG+VG EAL+ +LKNY RSL++KT+I+VGV+GYPNVGKSSLINSLKR+KA GVS+TPGFT+ MQE+ LDK ++
Sbjct: 235 GDASKAGANLLSRSGSVGAEALLQLLKNYSRSLDIKTSISVGVVGYPNVGKSSLINSLKRTKAAGVSSTPGFTRCMQEVQLDKHIK 320
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A1Y3NJJ6_PIRSE (G domain-containing protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NJJ6_PIRSE)
HSP 1 Score: 113 bits (282), Expect = 7.200e-29
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 4 SADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
SAD A+D MLN S +G + L+ +LKNYCR+ N+KT+ITVGVIG+PNVGKSS+INSLKRSK V +TPG TK+ Q+IHLDK ++
Sbjct: 52 SADIASDSMLNSSECIGADNLIKLLKNYCRNANIKTSITVGVIGFPNVGKSSVINSLKRSKVCNVGSTPGVTKNAQQIHLDKNIK 136
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
H3GVP4_PHYRM (CP-type G domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GVP4_PHYRM)
HSP 1 Score: 117 bits (293), Expect = 8.530e-29
Identity = 60/86 (69.77%), Postives = 70/86 (81.40%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKAA +N S AVGT+ALM +LKNYCRS +KTAITVGVIGYPNVGKSS+INSLKRSKA VS+T G TK MQE+H+D ++
Sbjct: 203 GRADKAAGEAVNGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSTAGHTKVMQEVHIDSKIK 288
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A1V9YUQ5_9STRA (Guanine nucleotide-binding protein-like 3 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YUQ5_9STRA)
HSP 1 Score: 112 bits (280), Expect = 2.760e-28
Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 1
Query: 10 DKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
+KA ++ S AVGTEALM +LKNYCRS N+KTAITVGVIGYPNVGKSS+INSLKRSKA VS+ G TK +QEIHLD ++
Sbjct: 211 EKAQGKLMTGSRAVGTEALMQLLKNYCRSSNIKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSIAGHTKVVQEIHLDNKIK 293
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A6G0JUJ3_9STRA (CP-type G domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0JUJ3_9STRA)
HSP 1 Score: 115 bits (288), Expect = 4.360e-28
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKAA ++ S AVGT+ALM +LKNYCRS +KTAITVGVIGYPNVGKSS+INSLKRSKA VS T G TK MQE+H+D ++
Sbjct: 206 GKADKAAGEAVSGSKAVGTDALMQLLKNYCRSHGVKTAITVGVIGYPNVGKSSVINSLKRSKAASVSCTAGHTKVMQEVHIDSKIK 291
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A1Y1V3D0_9FUNG (p-loop containing nucleoside triphosphate hydrolase protein n=2 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1V3D0_9FUNG)
HSP 1 Score: 114 bits (285), Expect = 4.670e-28
Identity = 55/85 (64.71%), Postives = 69/85 (81.18%), Query Frame = 1
Query: 4 SADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
SAD A+D MLN S +G + L+ +LKNYCRS N+KT+ITVGVIG+PNVGKSS+INSLKRSK V +TPG TK+ Q+IHLDK ++
Sbjct: 211 SADIASDSMLNSSECIGADNLIKLLKNYCRSANIKTSITVGVIGFPNVGKSSVINSLKRSKVCNVGSTPGVTKNAQQIHLDKNIK 295
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
A0A8K1CQG3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQG3_PYTOL)
HSP 1 Score: 115 bits (287), Expect = 6.170e-28
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 1
Query: 1 GSADKAADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
G ADKA+ M++ S AVGT+ALM +LKNYCR+ ++KTAITVGVIGYPNVGKSS+INSLKRSKA VS+ G TK MQEIH+D ++
Sbjct: 217 GRADKASTDMVSGSKAVGTDALMQLLKNYCRNNHIKTAITVGVIGYPNVGKSSVINSLKRSKAASVSSVAGHTKVMQEIHIDSKIK 302
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Match:
GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=GNL3_DICDI)
HSP 1 Score: 115 bits (287), Expect = 6.570e-28
Identity = 54/81 (66.67%), Postives = 70/81 (86.42%), Query Frame = 1
Query: 16 AADGMLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLKRSKAVGVSATPGFTKSMQEIHLDKTVR 258
A++ MLN + ++G E L+ +LKNY RSLN+KT++TVG+IGYPNVGKSSLINSLKR+++VGV ATPGFTK QE+HLDK V+
Sbjct: 231 ASNDMLNSTESLGAEQLLQLLKNYSRSLNIKTSVTVGIIGYPNVGKSSLINSLKRTRSVGVGATPGFTKFAQEVHLDKNVK 311
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10554.401.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 2.34e-46 / Id = 98.84 Expect = 2.55e-34 / Id = 75.58 Expect = 9.05e-30 / Id = 67.44 Expect = 7.20e-29 / Id = 63.53 Expect = 8.53e-29 / Id = 69.77 Expect = 2.76e-28 / Id = 68.67 Expect = 4.36e-28 / Id = 68.60 Expect = 4.67e-28 / Id = 64.71 Expect = 6.17e-28 / Id = 67.44 Expect = 6.57e-28 / Id = 66.67 Sequence A0A6H5JTY8_9PHAE A0A836CE27_9STRA A0A4D9DAV5_9STRA A0A1Y3NJJ6_PIRSE H3GVP4_PHYRM A0A1V9YUQ5_9STRA A0A6G0JUJ3_9STRA A0A1Y1V3D0_9FUNG A0A8K1CQG3_PYTOL GNL3_DICDI Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 249 Model size 276 Exons 2 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko03009 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. J EggNOG OGs COG1161@1,KOG2484@2759 EggNOG free text desc. guanine nucleotide-binding protein-like GOs GO:0000003,GO:0000054,GO:0000055,GO:0000166,GO:0000226,GO:0000278,GO:0000280,GO:0000459,GO:0000460,GO:0000463,GO:0000466,GO:0000467,GO:0000469,GO:0000470,GO:0001652,GO:0001654,GO:0001882,GO:0001883,GO:0002119,GO:0002164,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007346,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009908,GO:0009987,GO:0010073,GO:0010074,GO:0010077,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016604,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017145,GO:0019001,GO:0019219,GO:0019222,GO:0019827,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0030054,GO:0030154,GO:0030684,GO:0030687,GO:0030856,GO:0031123,GO:0031125,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031401,GO:0031503,GO:0031647,GO:0031974,GO:0031981,GO:0032091,GO:0032092,GO:0032204,GO:0032205,GO:0032206,GO:0032210,GO:0032211,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033233,GO:0033234,GO:0033235,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0040008,GO:0040014,GO:0042127,GO:0042254,GO:0042273,GO:0042886,GO:0043010,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043496,GO:0043628,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0044703,GO:0045184,GO:0045595,GO:0045604,GO:0045664,GO:0045682,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0045995,GO:0046483,GO:0046907,GO:0048027,GO:0048285,GO:0048316,GO:0048366,GO:0048367,GO:0048437,GO:0048444,GO:0048468,GO:0048507,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048609,GO:0048638,GO:0048699,GO:0048731,GO:0048825,GO:0048827,GO:0048831,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0051052,GO:0051053,GO:0051054,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051301,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0055044,GO:0060041,GO:0060255,GO:0060284,GO:0060341,GO:0061458,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090073,GO:0090304,GO:0090305,GO:0090307,GO:0090501,GO:0090503,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0097159,GO:0097367,GO:0098727,GO:0099402,GO:0140014,GO:1901265,GO:1901360,GO:1901363,GO:1901987,GO:1901990,GO:1902679,GO:1902680,GO:1902850,GO:1902893,GO:1902895,GO:1903047,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1904356,GO:1904357,GO:1904814,GO:1904816,GO:1905392,GO:1990904,GO:2000024,GO:2000026,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001141,GO:2001251,GO:2001252 KEGG Pathway ko03008,map03008 KEGG ko ko:K14538 Preferred name GNL3 Seed eggNOG ortholog 2880.D7G1C4 Seed ortholog evalue 2.5e-34 Seed ortholog score 151.0 Taxonomic scope Eukaryota
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927557.391978-UTR-E-siliculosus-1a_F_contig10554:593..620 1622927557.391978-UTR-E-siliculosus-1a_F_contig10554:593..620 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10554 594..620 + 1696318584.7812006-UTR-E-siliculosus-1a_F_contig10554:593..620 1696318584.7812006-UTR-E-siliculosus-1a_F_contig10554:593..620 Ectocarpus siliculosus Ec863f_EcPH12_90f female UTR E-siliculosus-1a_F_contig10554 594..620 +
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10554.401.1
>prot_E-siliculosus-1a_F_contig10554.401.1 ID=prot_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=83bp
MLNRSGAVGTEALMGVLKNYCRSLNLKTAITVGVIGYPNVGKSSLINSLK back to top mRNA from alignment at E-siliculosus-1a_F_contig10554:594..1706+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10554.401.1 ID=mRNA_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1113bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10554:594..1706+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GGCTCAGCCGACAAGGCTGCGGATGGG ATGCTCAACCGGTCGGGCGCGGT
GGGCACGGAGGCCCTGATGGGCGTGCTGAAGAACTACTGCCGCAGCCTCA
ACCTCAAGACGGCCATCACCGTGGGAGTCATTGGGTACCCCAACGTCGGA
AAGTCTTCCCTCATCAACTCGCTAAAGAG GTGCGTGCAAGGGAGATGGGA
GGGGAGAAGAGAAGTTGGGAGGGCGAGATTGTATGGTGCACGAAGAGAAT
GAGATGGGTAAGACACAGAGTGGATGTGTGGGACGAGAGAGATGCCAGTT
CTCAATGCACATGTTAACAAGTTCGAGCCATTTCAGTGTTCCGACCGCCT
TTGCCTTGTTGTGTGTTGTTACAGAGCTCTTGGCGTCATGTCCCCTACGC
TAGCGGCCGGAGGCCTCTCCTCTTGTGTGTGTGTGTACTATATGTCTTTT
TTTGTTAGCATCAACCGCGCTAAGCGGCGGACCAATGAAAAGACGTCAGT
CTCAGTGCGGTTGAAAACACAACACACTTTTAGACGCCATGAACTGGGAG
TGAGTGTGTGTGTATGTCATTCTTTTTTGCGTGTGTGTTACCGGGCTAGC
GCTTGAGACATGTGCGTGCCTTCTGTGCGTAATATGTTGATTCTCGTACA
TTATTCTCCTACTCTCGTCTGTTCTACTGATTCCAAGCCAACCCTCCCTA
ACCCTCTTAGAGTCGTTTGCTGTGTCCAATCACTCCTCACGTTCAACTTT
CTTGAAATGGTCTTGTTGTTGCAGGGTCCATCCAGTTCTCACCCGCTGGC
GCCCTTTCTTTCGAGTTTTTCTCGCCCTTCTTTGTGGTTGCGAAACGAAC
GTGGCTGCGGCAGGGTTCTGGCCGTAAAACGCTATCGTACTTTGTTCGTC
TTGCAGCAAGCCGTTTCATAAACGGTCACGTAACCACGTTGCATGAGGTA
TATTTGTGCCGTTAATAGGTTACATGCTGATGGCTGTGTGTATGTTGTAT
GTATGGATGTATGCAGGTCGAAAGCGGTGGGTGTGTCGGCGACGCCGGGC
TTCACGAAGTCCATGCAGGAGATACACCTTGACAAGACGGTGAGGACCCC
CAATATGTGGTAG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10554:594..1706+
>mRNA_E-siliculosus-1a_F_contig10554.401.1 ID=mRNA_E-siliculosus-1a_F_contig10554.401.1|Name=mRNA_E-siliculosus-1a_F_contig10554.401.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=498bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10554:594..1706+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top