mRNA_E-siliculosus-1a_F_contig1055.399.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1055.399.1 vs. uniprot
Match: D8LRM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM2_ECTSI) HSP 1 Score: 1254 bits (3245), Expect = 0.000e+0 Identity = 766/828 (92.51%), Postives = 782/828 (94.44%), Query Frame = 1 Query: 1 MDGTRAPPSEPAKGDQESLLPDEDVVTKLQQGQAVQNDVREALARLASALSSVSDNDTIIRTVKHRFDERKEARADLWRVTEEARADKERRDSLYKAQADRESALQNEVERLERAVKIAENSCTDTQREGERAAAAADKEISRLREKSSSAEKDAATWQQRANAGELRLESMTAEVSALHEAMAGLHGEMGAVQRELDSAKTSQDKLAADLSRAEGRHRKSQEACSSTIAKAKDSEKRLRKETEERERVSAELEKLVQVSKEEETKNLTLTAEIKRLKESEGVHRSGSDKLNATNRELNALLQCLSTDLEEAKAAGESSGKRAETLAHEVGLKEGEVQRVREALAATEARLAASGRDKELLKEALSKSSAEAHAKTAEFDRQRGELDLLEREKHDLVLDVQERVRVHKEATADAERCRERLEQAENRLKEGESATLAAELSRKKALDELGEARRGTVMQDERIEALRSELTTLRRTLEQTTEAAKARDRESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAGHNAQEAAKALXXXXXXXXXXXXXXXXXXXXLEIANARWKAAQGQLVAANRREKEFAEEARRRMREALESKEKEKVTALREIETHAERRFKEAEASHRAVERNHDRALDAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGSSSVAPAGGSGXXXXXXXXXXXVXXXRXXXXXXXXRGSEVTEAEMTSLRRQMKAATEAKETAQRSALEARLRADEETKRRSSLEESLCRKESDMLAALERLNQLKIRQKEVEEHAREGEEDLRSLV 2484
MDGTRAPPSEPAKGDQ+SLLPDEDVVTKLQQGQAV+ DVREALARLASALSSVSDNDTIIRTVKHRFDERKEARADLWRVTEEARA+KERRD L KAQADRESALQNEVERLERAVKIAENSCTDTQREGERAAA+ADKEISRLREKSSSAEKDAATWQQRANAGELRLESMTAEVSALHEAMAGLHGEMGAVQRELD KTSQDKLAADLSRAEGR+RKSQEAC STIAKAKD+EKRLRKETEERERVSAELEKLVQ+SKEEETKN+TLTAEIKRLKESEGVHRSGSDKLNATNRELNALLQ LSTDLEEAKAAGESSGKRAE LAHEVG+KEG+VQRVREALAATEARLAASGRDKELLKEALSKSSAEAHAKTAEFDRQRGELDLLEREKHDLVLDVQERVRVHKEATADAER RERLEQAENRLKEGESATLAAELSRKK LDELGEARRGTVMQDERIEALRSELTTLRRTLEQTTEAAKARDRESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAG +AQEAAKA LEIANARWKAAQGQLVAANRREKEFAEEARRRMREALESK+KEKVTALRE+ETHA+RRF EAEASHRAVERNHDRAL AIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGSSSVAPAGG+G XXXXX XXX XXXX RGSEVTEAEMTSLRRQMKAATEAKETAQRSALEARLRADEETK+RSSLEESLCRKESDMLAALERLNQLKIRQKEVEEHAREGEEDLRSLV
Sbjct: 1 MDGTRAPPSEPAKGDQDSLLPDEDVVTKLQQGQAVKADVREALARLASALSSVSDNDTIIRTVKHRFDERKEARADLWRVTEEARAEKERRDCLNKAQADRESALQNEVERLERAVKIAENSCTDTQREGERAAASADKEISRLREKSSSAEKDAATWQQRANAGELRLESMTAEVSALHEAMAGLHGEMGAVQRELDGTKTSQDKLAADLSRAEGRYRKSQEACLSTIAKAKDAEKRLRKETEERERVSAELEKLVQMSKEEETKNVTLTAEIKRLKESEGVHRSGSDKLNATNRELNALLQSLSTDLEEAKAAGESSGKRAEALAHEVGVKEGDVQRVREALAATEARLAASGRDKELLKEALSKSSAEAHAKTAEFDRQRGELDLLEREKHDLVLDVQERVRVHKEATADAERYRERLEQAENRLKEGESATLAAELSRKKTLDELGEARRGTVMQDERIEALRSELTTLRRTLEQTTEAAKARDRESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAGQDAQEAAKAQAKLEDDGRRAADSVQRLEEELEIANARWKAAQGQLVAANRREKEFAEEARRRMREALESKDKEKVTALREMETHADRRFMEAEASHRAVERNHDRALVAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGSSSVAPAGGNGGDGSSAXXXXXXXXXXXXXXSSGARGSEVTEAEMTSLRRQMKAATEAKETAQRSALEARLRADEETKKRSSLEESLCRKESDMLAALERLNQLKIRQKEVEEHAREGEEDLRSLV 828
BLAST of mRNA_E-siliculosus-1a_F_contig1055.399.1 vs. uniprot
Match: A0A836CBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP5_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.400e-8 Identity = 165/602 (27.41%), Postives = 253/602 (42.03%), Query Frame = 1 Query: 526 VSALHEAMAGLHGEMGAVQRELDSAKTSQDKLAADLSRAEGRHRKSQEACSSTIAKAKDSEKRLRKETEERERVSAELEKLVQVSKEEETKNLTL--TAEIKRLKESEG-VH--RSGSDKLNATNRELNALLQCLSTDLEEAKAAGESSGKRAETLAHEVGLKEGEVQRVREALAATEARLAASGR------DKELLKEALSKSSAEAHAK---------TAEFDRQRGELD-------LLEREKHDLVLDVQERVRVHKEATADAERCRERLEQAENRLKEGESATLAAELSRKKALDELGEARR---GTVMQDERIEALRSE-------------LTTLRRTLEQTTEAAKARD-------------------------------RESAQRLVQLSQANAKLSSESTSARARVIDAEEAVEKAGHNAQEAAKALXXXXXXXXXXXXXXXXXXXXLEIANARWKAAQGQLVAANRREKEFAEEARRRMREALESKEKEKVTALREIETHAERRFKEAEASHRAVERNHDRALDAIREEAKKKLLEEEARRVREVSDARKKSKAVVEALQTLQGELTQSEAKGSGLERQVSQLSARMSRAGS 2109
VS LH AMA LH E+G RE +A ++DKL DL+RAE R K+ A AK ++ + + R ++AE + + + EE+++ + A + + + S+G +H ++ +A NR L + T A + + LA ++ + + R +EA +AR AS D++L +E + +AEA + +QR ELD LE EKHD+VL+ Q + A AD+ C E RL+ GES A A +EL AR G +D + LR+ + L R ++ + +A+D RE+AQRLV+LSQ NAKLSSE +S R EE E Q AA+ + E+A AR +A QL AA RE + R+ALES+ ++ + A RE ++ AV+R L E RR REV +A++++KAV AL+ +QG+L + E + S L ++ Q+ A + GS
Sbjct: 301 VSELHAAMAALHAELGVTSREGQAAVEARDKLKRDLARAEARADKAAGALEVAEAKLREGDHQAR--------LAAEALTVARTAAEEQSQRFSAERAAFLAQAERSDGQLHDFKAALSDADAANRLF--LKKRFLTSTMCASCVVRGGIRELKALAQKLSQEAADAARDKEARGGEDARALASAHEQLQSIDRQLKEEQGLRRAAEAERXXXXXXXXXXVSTAQQQRSELDGLRQAVSRLEAEKHDIVLEAQRQQAAA--AAADSAAC------DEQRLR-GESEQRAHA-----AAEELALAREQLAGLQARDGMLWVLRNFNYTYLSTIMIKFFMNRLPRRAQKANQGVRAKDSSTNYWAGLLSTDVLSNAALLQAXXXXXXXXREAAQRLVELSQTNAKLSSELSSLRKHADQLEEEKEAFDQTLQAAAQRVQTLEDDA--------------ELAGARQQALNAQLEAARARETK---------RQALESRHQQVLLAARESQS--------------AVQRQ---------------LGVEVERRQREVGEAQRRTKAVGSALEVVQGQLAEEERRSSALRDELQQVKALSAAPGS 826 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1055.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1055.399.1 >prot_E-siliculosus-1a_F_contig1055.399.1 ID=prot_E-siliculosus-1a_F_contig1055.399.1|Name=mRNA_E-siliculosus-1a_F_contig1055.399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1353bp MDGTRAPPSEPAKGDQESLLPDEDVVTKLQQGQAVQNDVREALARLASALback to top mRNA from alignment at E-siliculosus-1a_F_contig1055:16727..32132+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1055.399.1 ID=mRNA_E-siliculosus-1a_F_contig1055.399.1|Name=mRNA_E-siliculosus-1a_F_contig1055.399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=15406bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:16727..32132+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1055:16727..32132+ >mRNA_E-siliculosus-1a_F_contig1055.399.1 ID=mRNA_E-siliculosus-1a_F_contig1055.399.1|Name=mRNA_E-siliculosus-1a_F_contig1055.399.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=8118bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1055:16727..32132+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |