prot_E-siliculosus-1a_F_contig1054.392.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1054.392.1
Unique Nameprot_E-siliculosus-1a_F_contig1054.392.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length159
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1054.392.1 vs. uniprot
Match: D8LLS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS8_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 3.020e-96
Identity = 151/159 (94.97%), Postives = 153/159 (96.23%), Query Frame = 0 
Query:    1 MGSPRLAAPRSRASTVLALPLLAAALVLVCASLLPAGAVAMGPNDDGAANNLGLLAQACATSFCGLGVDALDLWLSLEEVCRTDASNQPSLEAGDEMEFGGVHAGGWGTAAAEGG-RGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA 158
            MGSPRLAAP+SRASTVLALPLLAAALVLVCASLLPAGA AMGPNDDGAANNLGLLAQACA+SFCGLGVDALDLWLSLEEVCRT ASNQPSLE G EMEFGGVH GGWGTAAAEGG RGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA
Sbjct:    1 MGSPRLAAPQSRASTVLALPLLAAALVLVCASLLPAGAEAMGPNDDGAANNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEMEFGGVHGGGWGTAAAEGGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA 159
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1054.392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLS8_ECTSI3.020e-9694.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..34
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..40
score: 0.783
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
NoneNo IPR availableTMHMMTMhelixcoord: 120..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1054contigE-siliculosus-1a_F_contig1054:14365..16627 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1054.392.1mRNA_E-siliculosus-1a_F_contig1054.392.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1054 14065..17778 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1054.392.1 ID=prot_E-siliculosus-1a_F_contig1054.392.1|Name=mRNA_E-siliculosus-1a_F_contig1054.392.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=159bp
MGSPRLAAPRSRASTVLALPLLAAALVLVCASLLPAGAVAMGPNDDGAAN
NLGLLAQACATSFCGLGVDALDLWLSLEEVCRTDASNQPSLEAGDEMEFG
GVHAGGWGTAAAEGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTW
TKEGYPVA*
back to top