Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.38.1 vs. uniprot
Match: D7G0V5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V5_ECTSI) HSP 1 Score: 147 bits (372), Expect = 4.790e-38 Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 Query: 1 MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRPDAPASKDEQDSTEPEGRGRTRSRGSSGSDPSMNRPSADTLLKLAQ 246
MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRPDAPASKDEQDSTEPEGRGRTRS GS GSDPSMNRPSADTLLKLAQ
Sbjct: 1 MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRPDAPASKDEQDSTEPEGRGRTRSHGSGGSDPSMNRPSADTLLKLAQ 82
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 498 |
| Model size | 499 |
| Exons | 3 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.38.1 >prot_E-siliculosus-1a_F_contig10.38.1 ID=prot_E-siliculosus-1a_F_contig10.38.1|Name=mRNA_E-siliculosus-1a_F_contig10.38.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=166bp
MARLVDSLLRGRAQASARHEAATAVSDIRAFVHAWRPDAPASKDEQDSTE
PEGRGRTRSRGSSGSDPSMNRPSADTLLKLAQRGVQLHNNARKLSHARNS
GGGGTSGGGGACSDWKSATEAYLRAAAASLVSLGSTSSSKDCGNLCRLFS
KAGELLVEDAGDDIRA back to topmRNA from alignment at E-siliculosus-1a_F_contig10:50838..52518+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10.38.1 ID=mRNA_E-siliculosus-1a_F_contig10.38.1|Name=mRNA_E-siliculosus-1a_F_contig10.38.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1681bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:50838..52518+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCAGGCTTGTGGACAGCTTGCTTCGAGGGAGAGCTCAGGCATCTGC
TCGACACGAAGCCGCTACCGCGGTGTCGGACATACGTGCCTTTGTCCACG
CTTGGAGACCCGATGCACCTGCGTCAAAAGATGAACAGGACAGCACTGAA
CCGGAAGGGCGAGGTCGAACTCGAAGCCGTGGTAGTAGCGGGAGTGACCC
AAGTATGAACAGACCTTCGGCCGACACCCTCCTCAAGCTTGCACAGGTAT
CGCGGTGCCAGATGTTCTGCTGGCGCTTGAATTCGGAGTCGGGTTTTCAC
TATTGTTTGCGTATCCGCCGACTTGTCTTGAGGACATGGTTGCAAACACG
CGTGCCGCTTTGAAGAGTAGAGAAGATGTGGTTGACCCAGAGTGACGGTG
CCGAACATGCGCGATGTTGGAGCTATCTCGTCGGGTACTCGGTCCGGCAA
ATTCTCACGTCACTCACACACAAAAATATCCTTGGAATTGCTGTACAATT
TTGAAACAGCACTTCTTACTCCACATTATTGTTTTCACGCTGGCGGAGCA
GTCCATATCTTGTAGTCCAATAGTTTCCTCGGAACTTACGTAAGACTGGT
GCCGCCGCTGCGCATACGGGGGTCGATTCGCTCAGAAGACCCTACCTGCT
TCAGTCTTGCCACCGCTGCCCCCGTAGCCTCTGCCTTAACTCTGGCTTGT
CGTAAGGACATGAGTATTCACACGGACGCCTTGAAGAAGAGATAAACAAC
TGGTCTGTACGTGCACACGAAAGGACACCTCGGATGCTCGACCAAGAATG
GCATCGGCTCCGGGACTTTCTCAATATTGCATACCACGACACAAGAGACG
CCGTTCATCGGTGTCACGACACAATACACCAAACTGACCGGAGCCTTCCA
TGGAGCGGTGTGGGTCAAGTGATATTTTCGTTGTAGGTCAGCATAGGACT
GCGGTGGTGGTCTCTAGAAATTAGTGCACCGGGTACCTGAAGGCGCAAGT
GCGGTATTGTCATACGCGTTCTTACCGCTACACATTCTTTGGGGTTGAAT
GAGTGGCTAACCATGATACATACCCAAACACGGTTGGACCCGCGCTGTGA
TGTCTGGATCTTGTATTTCATTTAGAGAGGAGTGCAGCTTCACAACAACG
CCCGGAAGCTGTCCCATGCCCGAAACAGCGGCGGCGGGGGAACATCAGGG
GGTGGTGGTGCTTGCAGCGACTGGAAGAGCGCGACTGAAGCCTACCTACG
CGCGGCGGCTGCTTCGCTCGTGTCCCTTGGGTCAACGTCTTCCTCAAAAG
ATTGGTGGGCAAGCGTCGAACACGCACGCCACGTGCACCACAACTGGCTG
CCTTTAGCCGTCGAGTCGGCCTCAGTTAGCAAACTTTCACTCTTTGTGGA
CAAGGCAATGGAATACCTGTACAGCATGAGTAGAAGTGGCTGGATGTCCG
ATAAGCGTTACGGTAGGGGGAGGTTTGTAGGCTTTCACCTGAAGCTGCAA
GAACCTCGCGCGAATGCATCCGGTGAAAATCGCATGGTTCCTTATGCATG
TTCATTTCCTTGTTTGAATCACTTACCGATTTTGCCGTGCCGCACCCCGC
GTCGACAGCGGAAACCTCTGCCGTCTTTTCTCGAAAGCCGGGGAGCTCTT
GGTTGAAGATGCTGGAGATGACATTCGGGCA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:50838..52518+ >mRNA_E-siliculosus-1a_F_contig10.38.1 ID=mRNA_E-siliculosus-1a_F_contig10.38.1|Name=mRNA_E-siliculosus-1a_F_contig10.38.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=996bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:50838..52518+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCCAGGCTTGTGGACAGCTTGCTTCGAGGGAGAGCTCAGGCATCTGC
TCGACACGAAGCCGCTACCGCGGTGTCGGACATACGTGCCTTTGTCCACG
CTTGGAGACCCGATGCACCTGCGTCAAAAGATGAACAGGACAGCACTGAA
CCGGAAGGGCGAGGTCGAACTCGAAGCCGTGGTAGTAGCGGGAGTGACCC
AAGTATGAACAGACCTTCGGCCGACACCCTCCTCAAGCTTGCACAGATGG
CCAGGCTTGTGGACAGCTTGCTTCGAGGGAGAGCTCAGGCATCTGCTCGA
CACGAAGCCGCTACCGCGGTGTCGGACATACGTGCCTTTGTCCACGCTTG
GAGACCCGATGCACCTGCGTCAAAAGATGAACAGGACAGCACTGAACCGG
AAGGGCGAGGTCGAACTCGAAGCCGTGGTAGTAGCGGGAGTGACCCAAGT
ATGAACAGACCTTCGGCCGACACCCTCCTCAAGCTTGCACAGAGAGGAGT
GCAGCTTCACAACAACGCCCGGAAGCTGTCCCATGCCCGAAACAGCGGCG
GCGGGGGAACATCAGGGGGTGGTGGTGCTTGCAGCGACTGGAAGAGCGCG
ACTGAAGCCTACCTACGCGCGGCGGCTGCTTCGCTCGTGTCCCTTGGGTC
AACGTCTTCCTCAAAAGATTGAGAGGAGTGCAGCTTCACAACAACGCCCG
GAAGCTGTCCCATGCCCGAAACAGCGGCGGCGGGGGAACATCAGGGGGTG
GTGGTGCTTGCAGCGACTGGAAGAGCGCGACTGAAGCCTACCTACGCGCG
GCGGCTGCTTCGCTCGTGTCCCTTGGGTCAACGTCTTCCTCAAAAGATTG
CGGAAACCTCTGCCGTCTTTTCTCGAAAGCCGGGGAGCTCTTGGTTGAAG
ATGCTGGAGATGACATTCGGGCACGGAAACCTCTGCCGTCTTTTCTCGAA
AGCCGGGGAGCTCTTGGTTGAAGATGCTGGAGATGACATTCGGGCA back to top
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