mRNA_E-siliculosus-1a_F_contig1054.391.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1054.391.1
Unique NamemRNA_E-siliculosus-1a_F_contig1054.391.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Match: D8LLS6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS6_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 7.270e-22
Identity = 91/116 (78.45%), Postives = 93/116 (80.17%), Query Frame = -3 
Query:    1 AASEAGRRESWSXXXXXXXXXXXXXXXXXXXXXXXXPASSXXAVGSSGTGGDIAPARWAAPXXXXXXXXXXXXAAGEAPIQAAGGGRRATRADVSGRNPFAKSGNPFAVSPSAAEG 348
            AA+EAGRRES  XXXXXXXXXXXXXXXXXXXXXX    S    VGSSG+GGDIAPARWAAP  XXX       A  E PIQAAGGGRR TRADVSGRNPFAKSGNPFAVSPSAAEG
Sbjct:  283 AAAEAGRRESXXXXXXXXXXXXXXXXXXXXXXXX----SRGGTVGSSGSGGDIAPARWAAPGAXXXAPPARFLAPLEPPIQAAGGGRRTTRADVSGRNPFAKSGNPFAVSPSAAEG 394
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BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Match: A0A6H5KX10_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX10_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.960e-19
Identity = 53/74 (71.62%), Postives = 56/74 (75.68%), Query Frame = -3 
Query:    1 AVGSSGTGGDIAPARWAAPXXXXXXXXXXXXAAGEAPIQAAGGGRRATRADVSGRNPFAKSGNPFAVSPSAAEG 222
            AVGSSG+GGDIAPARW AP              GE PIQAA GG+R TRADVSGRNPFAKSGNPFAVSPSAA+G
Sbjct:  306 AVGSSGSGGDIAPARWTAP--------------GEPPIQAASGGKRTTRADVSGRNPFAKSGNPFAVSPSAADG 365
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1054.391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLS6_ECTSI7.270e-2278.45Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KX10_9PHAE1.960e-1971.62MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1054contigE-siliculosus-1a_F_contig1054:5680..6035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size321
Model size357
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.554228-CDS-E-siliculosus-1a_F_contig1054:5679..60001622927555.554228-CDS-E-siliculosus-1a_F_contig1054:5679..6000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 5680..6000 +
1696318583.7755554-CDS-E-siliculosus-1a_F_contig1054:5679..60001696318583.7755554-CDS-E-siliculosus-1a_F_contig1054:5679..6000Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1054 5680..6000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.673006-UTR-E-siliculosus-1a_F_contig1054:6000..60351622927555.673006-UTR-E-siliculosus-1a_F_contig1054:6000..6035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 6001..6035 +
1696318583.784508-UTR-E-siliculosus-1a_F_contig1054:6000..60351696318583.784508-UTR-E-siliculosus-1a_F_contig1054:6000..6035Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1054 6001..6035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1054.391.1prot_E-siliculosus-1a_F_contig1054.391.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1054 5680..6000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1054.391.1

>prot_E-siliculosus-1a_F_contig1054.391.1 ID=prot_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=107bp
SLRGGGTHRERVAALGERISTGNIGPCRPPPSACRLDGRLTRRQESRRRG
LPRRPRRRPSRRRDVAAGATRAHRSSRGGRAAAAAPGAAAGVLIGRRGRS
RRRRRP*
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mRNA from alignment at E-siliculosus-1a_F_contig1054:5680..6035+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1054.391.1 ID=mRNA_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCCTCCGCGGCGGAGGGACTCACCGCGAACGGGTTGCCGCTCTTGGCGA
AAGGATTTCTACCGGAAACATCGGCCCTTGTCGCCCTCCTCCCTCCGCCT
GCCGCTTGGATGGGCGCCTCACCCGCCGCCAGGAATCGCGCCGGCGGGGC
CTCCCCCGACGCCCCCGGCGCCGCCCATCTCGCCGGCGCGATGTCGCCGC
CGGTGCCACTCGAGCCCACCGCTCCTCCCGAGGAGGCCGGGCCGCCGCCG
CCGCCCCCGGCGCCGCCGCCGGCGTACTCATAGGACGACGTGGACGAAGT
CGACGACGCCGACGACCATGACTCTCTCCGCCCAGCCTCTGATGCCGCTG
CCGCTA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1054:5680..6035+

>mRNA_E-siliculosus-1a_F_contig1054.391.1 ID=mRNA_E-siliculosus-1a_F_contig1054.391.1|Name=mRNA_E-siliculosus-1a_F_contig1054.391.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=642bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1054:5680..6035+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TCCCTCCGCGGCGGAGGGACTCACCGCGAACGGGTTGCCGCTCTTGGCGA
AAGGATTTCTACCGGAAACATCGGCCCTTGTCGCCCTCCTCCCTCCGCCT
GCCGCTTGGATGGGCGCCTCACCCGCCGCCAGGAATCGCGCCGGCGGGGC
CTCCCCCGACGCCCCCGGCGCCGCCCATCTCGCCGGCGCGATGTCGCCGC
CGGTGCCACTCGAGCCCACCGCTCCTCCCGAGGAGGCCGGGCCGCCGCCG
CCGCCCCCGGCGCCGCCGCCGGCGTACTCATAGGACGACGTGGACGAAGT
CGACGACGCCGACGACCATGATCCCTCCGCGGCGGAGGGACTCACCGCGA
ACGGGTTGCCGCTCTTGGCGAAAGGATTTCTACCGGAAACATCGGCCCTT
GTCGCCCTCCTCCCTCCGCCTGCCGCTTGGATGGGCGCCTCACCCGCCGC
CAGGAATCGCGCCGGCGGGGCCTCCCCCGACGCCCCCGGCGCCGCCCATC
TCGCCGGCGCGATGTCGCCGCCGGTGCCACTCGAGCCCACCGCTCCTCCC
GAGGAGGCCGGGCCGCCGCCGCCGCCCCCGGCGCCGCCGCCGGCGTACTC
ATAGGACGACGTGGACGAAGTCGACGACGCCGACGACCATGA
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