mRNA_E-siliculosus-1a_F_contig10539.389.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10539.389.1
Unique NamemRNA_E-siliculosus-1a_F_contig10539.389.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10539.389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10539contigE-siliculosus-1a_F_contig10539:744..1594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size324
Model size326
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927555.4957237-CDS-E-siliculosus-1a_F_contig10539:744..9311622927555.4957237-CDS-E-siliculosus-1a_F_contig10539:744..931Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10539 745..931 -
1696318583.7571182-CDS-E-siliculosus-1a_F_contig10539:744..9311696318583.7571182-CDS-E-siliculosus-1a_F_contig10539:744..931Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10539 745..931 -
1622927555.509365-CDS-E-siliculosus-1a_F_contig10539:1457..15941622927555.509365-CDS-E-siliculosus-1a_F_contig10539:1457..1594Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10539 1458..1594 -
1696318583.7662256-CDS-E-siliculosus-1a_F_contig10539:1457..15941696318583.7662256-CDS-E-siliculosus-1a_F_contig10539:1457..1594Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10539 1458..1594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10539.389.1prot_E-siliculosus-1a_F_contig10539.389.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10539 745..1594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10539.389.1

>prot_E-siliculosus-1a_F_contig10539.389.1 ID=prot_E-siliculosus-1a_F_contig10539.389.1|Name=mRNA_E-siliculosus-1a_F_contig10539.389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=108bp
GAAAAAAAAIGERVERDGRTDSGGSNGAGAATGGGGSFAAAPHQNRTTIM
SLLLSELVLRHEGVVRRSATQEEAAAAAAAAAAGDAGAAAGATEFLGEAN
LLELLSDL
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mRNA from alignment at E-siliculosus-1a_F_contig10539:744..1594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10539.389.1 ID=mRNA_E-siliculosus-1a_F_contig10539.389.1|Name=mRNA_E-siliculosus-1a_F_contig10539.389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=851bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10539:744..1594- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCCGCCGCTGCCGCTGCTGCTGCTATCGGCGAGCGGGTAGAGAGGGA
CGGGAGGACGGATTCTGGAGGGTCGAACGGGGCTGGAGCGGCTACCGGCG
GAGGCGGATCTTTTGCTGCCGCCCCTCATCAGAACCGGTTAGTTCGTGCC
TTGCTGTGCTGGTGTTGTGTGTGTGTTTTTTATTGTCCACTGAACGAGTT
GCGGCGACCCAAGTAGAATTGGGGATGAGGGGGGGTGTTGTGGCTTGTGT
TTCTGGCTGTTTTTTCTTGACAGACAAACAGCGTGTTTGATTGGATCTCG
TGTTTTTTTTGTGGCACTGTTGTAGCCCCCGGCACCCCCTACGCCCCTCT
CGTCTTTGCCATGCATTGTGGCATACGTAATTTGGCCTCGCGCTGACTCA
CAAGATCCTGCTGTTACCGAACCGTTCTTCTGTTCTTTCGCTCGCTGCCT
TCACAGACCTTAAAAAACACGGTGCCCCCCCGCCCTTCTCCCACCCCTCT
CGTGGTATTAATGTCTTGAACGGCCCACTCCCCCCCGCTCCGTCCTCTCG
AGAACGCGTAGTCAGTGGTCTAACCGCTAAGGAATGCCAAAAACATAAAA
GAGTACCCCCCGCCCCCGCCCCCGCCCGTCTGGTGCGATGAAACATCTTC
TGTCCCAACTCAGCACCACCATCATGAGCCTCCTTCTGTCGGAGCTGGTT
CTCCGTCATGAGGGTGTCGTTCGAAGGTCGGCCACCCAGGAGGAAGCGGC
AGCGGCGGCAGCGGCGGCGGCCGCCGGGGATGCGGGGGCGGCGGCGGGCG
CGACGGAGTTCTTGGGAGAGGCGAACCTGCTGGAGTTGCTGTCCGACCTC
G
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10539:744..1594-

>mRNA_E-siliculosus-1a_F_contig10539.389.1 ID=mRNA_E-siliculosus-1a_F_contig10539.389.1|Name=mRNA_E-siliculosus-1a_F_contig10539.389.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10539:744..1594- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGGGCCGCCGCTGCCGCTGCTGCTGCTATCGGCGAGCGGGTAGAGAGGGA
CGGGAGGACGGATTCTGGAGGGTCGAACGGGGCTGGAGCGGCTACCGGCG
GAGGCGGATCTTTTGCTGCCGCCCCTCATCAGAACCGGGGGCCGCCGCTG
CCGCTGCTGCTGCTATCGGCGAGCGGGTAGAGAGGGACGGGAGGACGGAT
TCTGGAGGGTCGAACGGGGCTGGAGCGGCTACCGGCGGAGGCGGATCTTT
TGCTGCCGCCCCTCATCAGAACCGCACCACCATCATGAGCCTCCTTCTGT
CGGAGCTGGTTCTCCGTCATGAGGGTGTCGTTCGAAGGTCGGCCACCCAG
GAGGAAGCGGCAGCGGCGGCAGCGGCGGCGGCCGCCGGGGATGCGGGGGC
GGCGGCGGGCGCGACGGAGTTCTTGGGAGAGGCGAACCTGCTGGAGTTGC
TGTCCGACCTCCACCACCATCATGAGCCTCCTTCTGTCGGAGCTGGTTCT
CCGTCATGAGGGTGTCGTTCGAAGGTCGGCCACCCAGGAGGAAGCGGCAG
CGGCGGCAGCGGCGGCGGCCGCCGGGGATGCGGGGGCGGCGGCGGGCGCG
ACGGAGTTCTTGGGAGAGGCGAACCTGCTGGAGTTGCTGTCCGACCTC
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