mRNA_E-siliculosus-1a_F_contig1053.385.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 657 bits (1695), Expect = 5.090e-212 Identity = 580/730 (79.45%), Postives = 586/730 (80.27%), Query Frame = 1
Query: 46 GVVLEGRSTVWLDGSTLLENSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFHDDRYDVETDPLEGGGAVIISDGSN------------ATFLDCNFTLN-----GGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEATGELDGVAFVGNXXXXXXXXAVFFSLGTNATVTGGVFSSNTATGAGGHVVVADAHTNVELLPDAAA-SGVGTTTATPLVLSGGEAGTDGGAVHAYSGAAVSAVSVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGXXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDAXXXXXXXXXXXXXXXXDGGGLRASYLSKVVLXXXXXXXXXXXXXXXXVALDASSDTDNDDLNAANASSALDCRSGAFEGNHAGERGGAVYVTRESVLSFEGCGSFGNSASLGASVYASHSFVTLSEGSVLANDEVPTGAMVYALSTQLVAWNASFSV 2181
GVVLEGRSTVWLDGSTLLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFG T GLGGGVKIIGSYATTTISI DSLFEGNSA DGGGLYISSDYVLTVSRTVFHDNVAG FGGGAVLESNGVAALSSSNFTGGFAWN XXXXXXX VSISDCLFEGNSN+FAGGAIRVE EAAVSL GTTFSNNFISSQSGAGSGGAVSVSAGTLTATDC FENNQAFHDDRYDVETDPLEGGGAVIISDGSN AT + FT N GGA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GTNATVTGG+FS+NTAT GGHVV ADAHTNVELLPDAAA SGVGTT ATPLVLSGGEAGTDGGAVHAY G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTG XXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDA XXXXXXXXXXX DGGGLRASYLSKVVL XXXXXXXXXXXXXXVALDASS TDND+LNAANASSALDCR G FEGNHAGERGGAVYVTRESVLSFEGC SFGNSASLGA LSTQLVAWNASFSV
Sbjct: 187 GVVLEGRSTVWLDGSTLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGDRTFGLGGGVKIIGSYATTTISITDSLFEGNSATDGGGLYISSDYVLTVSRTVFHDNVAGFFGGGAVLESNGVAALSSSNFTGGFAWNXXXXXXXXXXRVSISDCLFEGNSNKFAGGAIRVEEEAAVSLSGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCNFENNQAFHDDRYDVETDPLEGGGAVIISDGSNVGGALLAEGSSTATLTNVAFTSNQAGVYGGALSIYEESVCLMNASHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------GTNATVTGGLFSTNTATDTGGHVVAADAHTNVELLPDAAAASGVGTT-ATPLVLSGGEAGTDGGAVHAYGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGTNFXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDASLAXXXXXXXXXXXFTDGGGLRASYLSKVVLDTXXXXXXXXXXXXXXVALDASSGTDNDNLNAANASSALDCRGGTFEGNHAGERGGAVYVTRESVLSFEGCESFGNSASLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQLVAWNASFSV 884
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 619 bits (1596), Expect = 1.800e-195 Identity = 582/746 (78.02%), Postives = 589/746 (78.95%), Query Frame = 1
Query: 46 GVVLEGRSTVWLDGSTLLENSAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEATGELDGVAFVGNXXXXXXXX----------------------------------AVFFSLGTNATVTGGVFSSNTATGAGGHVVVADAHTNVELLPDAAASGVGTTTATPLVLSGGEAGTDGGAVHAYSGAAVSAVSVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGXXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAQLGGGVSSVDAXXXXXXXXXXXXXXXXDGGGLRASYLSKVVLXXXXXXXXXXXXXXXXVALDASSDTDNDDLNAANASSALDCRSGAFEGNHAGERGGAVYVTRESVLSFEGCGSFGNSASLGASVYASHSFVTLSEGSVLANDEVPTGAMVYALSTQLVAWNASFSV 2181
GVVLEGRSTVWLDGSTLLE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFL NYYFG T G+GGGVKIIGSYATTTISIADSLFEGNSA DGGGLYISSDY LTVSRTVFHDNVAG FGGGAVLESNGVAALSS NFTGGFAWN XXXXXXX G+TF NNFISSQSGAGSGGA+SVSAGTL TDC FENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELDGVAFVGN AVFFSLGTNATVTGG+FSSNTATGAGGHVV ADAHTNVELLPDAAASG T T LVLSGGEAGTDGGAVHA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTG XXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTA+LGGGVSSVDA XXXXXXXXXXXXX DGGGLRASYLSKVVL XXXXXXXXXXXXXXXVALDASS TDND L+AANASSALDCRSG FEGN AGERGGAVYVTRESVL+FEGCGSFGNSASLGA LSTQLVAWNASFSV
Sbjct: 347 GVVLEGRSTVWLDGSTLLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGISLSGASNLTVSDSSFLGNYYFGDRTFGIGGGVKIIGSYATTTISIADSLFEGNSATDGGGLYISSDYALTVSRTVFHDNVAGFFGGGAVLESNGVAALSSCNFTGGFAWNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXGSTFLNNFISSQSGAGSGGAISVSAGTLIGTDCNFENNQAFHDDRYDVETDPLEGGGAVIISDGSNATFLDCNFTLNGGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELDGVAFVGNSVSGGRINIDTILVSAYKRPVPLNTLRLSRTNVLSPTNISGGAVFFSLGTNATVTGGLFSSNTATGAGGHVVAADAHTNVELLPDAAASGA-ETAETSLVLSGGEAGTDGGAVHASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVADAYFVGTGTXXXXXXXXXXXXXXRAFTGADVVLEGCVVDGNTAKLGGGVSSVDASLXXXXXXXXXXXXXTDGGGLRASYLSKVVLDXXXXXXXXXXXXXXXVALDASSGTDNDVLSAANASSALDCRSGTFEGNRAGERGGAVYVTRESVLAFEGCGSFGNSASLGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQLVAWNASFSV 1090
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A024U8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8U9_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 1.490e-5 Identity = 52/196 (26.53%), Postives = 79/196 (40.31%), Query Frame = 1
Query: 211 GISLSGASNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTATDCKFENNQAFH 798
G+++ + ++ S SF+ N V GG I+ T S+F GN A +G G+++ S + + T +N A + GGG V N V +S S F A +G VS+ + F N F GG + VE G T +N SS G + +A DC NN ++
Sbjct: 5324 GVAVDRSGKISASQCSFMAN-------VADEGGGAIMLLLKTVATVTNHSIFVGNVARNGAGIFMESASKMFLDETEIFENKAALNGGGIVCADNAVLTVSRSAFYKNSAVDGAGLHLSTVMLVSVRNSTFTENKASFRGGGLFVERCETTICQGLTVVSNTASSGGGVFWFHESNNNADVFKCADCSIRNNDIYN 5512
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A3D0K0C5_9BACT (Probable pectate lyase C n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D0K0C5_9BACT) HSP 1 Score: 58.9 bits (141), Expect = 2.350e-5 Identity = 64/237 (27.00%), Postives = 96/237 (40.51%), Query Frame = 1
Query: 211 GISLSGASNLTVSDSSFLDNYYFGTSTVGLG-GGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYV--LTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVSLDGTTFSNNFISSQSGAGSGGAVSVSAGTLTA--TDCKFENNQAFHDDRYDVETDPLEGGGAV-IISDGSNATFLDCNFTLN 903
GI + G SN+T +D + G+G GG++I+ +A T+++ DS+ EGN + +GG + + L V RT F DNVA GG + A+ + C F GN GGAIR ++ + GT S+N+ +G GG G +T TDC N++ + GG AV + + S F C T N
Sbjct: 138 GIDVKGQSNVTFADGTI----------AGMGEGGIRIL--HAVGTVTVVDSVLEGNRSDEGGAIQSRGSFETKLVVRRTDFIDNVAATHGGAIWIGQRQETAV-------------------------VDTCRFLGNRANTTGGAIRA-GSVSLQVVGTLISDNW----AGIRGGGVALQPDGHVTQKFTDCMVTGNRS----------GSIAGGVAVDLFNLSSRVRFKGCEITDN 322
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A2P6MQW3_9EUKA (Protein kinase domain containing protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MQW3_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 7.770e-5 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1
Query: 214 ISLSGA-SNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVS 666
+S+ G+ + L V S+FL N + G GG + + G+ AT T+S+ DS+F GN A DG +Y+S+ + + RT N A GGG S L + A G S ++++ F NS GGA+ ++ S
Sbjct: 219 LSVQGSMTQLVVYSSAFLGN-----TATGAGGSIWVFGT-ATPTVSVYDSIFNGNKATDGAAVYVSTQTTIQIFRTTVTYNTASSTGGGISSRSPSSVYLEDVDMFHNAASKGAGVYINTPS-LNVTGSRFNYNSATAEGGALHLDITPTAS 363
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Match: A0A2P6MYA3_9EUKA (Protein kinase domain containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MYA3_9EUKA) HSP 1 Score: 57.8 bits (138), Expect = 8.850e-5 Identity = 45/152 (29.61%), Postives = 70/152 (46.05%), Query Frame = 1
Query: 214 ISLSGA-SNLTVSDSSFLDNYYFGTSTVGLGGGVKIIGSYATTTISIADSLFEGNSAIDGGGLYISSDYVLTVSRTVFHDNVAGVFGGGAVLESNGVAALSSSNFTGGFAWNGXXXXXXXGSYVSISDCLFEGNSNRFAGGAIRVEAEAAVS 666
+S+ G+ + L V S+FL N + G GG + + G+ AT T+S+ DS+F GN A DG +Y+S+ + + RT N A GGG S L + A G S ++++ F NS GGA+ ++ S
Sbjct: 914 LSVQGSMTQLVVYSSAFLGN-----TATGAGGSIWVFGT-ATPTVSVYDSIFNGNKATDGAAVYVSTQTTIQIFRTTVTYNTASSTGGGISSRSPSSVYLEDVDMFHNAASKGAGVYINTPS-LNVTGSRFNYNSATAEGGALHLDITPTAS 1058 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1053.385.1 >prot_E-siliculosus-1a_F_contig1053.385.1 ID=prot_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=727bp VGCSLEGNRAEIEGGGVVLEGRSTVWLDGSTLLENSAGDQGGGVHGVNATback to top mRNA from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1053.385.1 ID=mRNA_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=8135bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ >mRNA_E-siliculosus-1a_F_contig1053.385.1 ID=mRNA_E-siliculosus-1a_F_contig1053.385.1|Name=mRNA_E-siliculosus-1a_F_contig1053.385.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4362bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:12823..20957+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |