mRNA_E-siliculosus-1a_F_contig1683.3830.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1683.3830.1 vs. uniprot
Match: D7FSV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV2_ECTSI) HSP 1 Score: 683 bits (1763), Expect = 1.770e-245 Identity = 358/390 (91.79%), Postives = 362/390 (92.82%), Query Frame = 2
Query: 230 MADDAVDATHSRVFHVLEVRKVIGGHKQALANHACVRSSLKAMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQDGNGKALVSLKNLTAERYWNARWQREWETKYHDPLVGIKRQEQEYIALGALDIGMQRRRAQRVRAALKERESRPEFDPIRRARERAQEFVVRRRRGPAEERCFGGRPQTAFGATNKCLAVVMHHQPNHSKDGGPREGQGAALARGEKGHGSRDRTRHKVNSAGGTGEGCGIGSGGGVTGDRPPGGDTGAGAWKRERRLVRSHTAKPRGSAVGEGXXXXXXGTAGRPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGDTGSSSVGSHERQPIIGIGQSSGRW 1399
MADDAVDAT+SRVFHVLEVRKVIGGHK ALANHACVRSSLKAMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQDGNGKALVSLKNLTAERYWN RWQREWETKYHDPLVGIKRQEQEYIALGALDIGMQRRRAQRVRAALKERESRPEFDPIRRARERAQEFVVRRRRG AEER FGGRP+TAFGATNKC+AVV HHQPNHSKDGGPREGQG ALARGEKG GSRDR RHK NS GGTG SGGGVTGDRPPGGD G AWKRERRLVRS TAKPRGSAVG XXXXX TA RPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGD SSSVGSHERQPI+ IGQSSGRW
Sbjct: 1 MADDAVDATYSRVFHVLEVRKVIGGHKHALANHACVRSSLKAMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQDGNGKALVSLKNLTAERYWNERWQREWETKYHDPLVGIKRQEQEYIALGALDIGMQRRRAQRVRAALKERESRPEFDPIRRARERAQEFVVRRRRGAAEERSFGGRPRTAFGATNKCVAVVKHHQPNHSKDGGPREGQGTALARGEKGRGSRDRARHKDNSTGGTGXXXXXXSGGGVTGDRPPGGDAGTAAWKRERRLVRSRTAKPRGSAVGXXXXXXX--TAARPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGDASSSSVGSHERQPIVRIGQSSGRW 388
BLAST of mRNA_E-siliculosus-1a_F_contig1683.3830.1 vs. uniprot
Match: A0A6H5JQD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD5_9PHAE) HSP 1 Score: 647 bits (1668), Expect = 3.660e-231 Identity = 336/379 (88.65%), Postives = 345/379 (91.03%), Query Frame = 2
Query: 263 RVFHVLEVRKVIGGHKQALANHACVRSSLKAMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQDGNGKALVSLKNLTAERYWNARWQREWETKYHDPLVGIKRQEQEYIALGALDIGMQRRRAQRVRAALKERESRPEFDPIRRARERAQEFVVRRRRGPAEERCFGGRPQTAFGATNKCLAVVMHHQPNHSKDGGPREGQGAALARGEKGHGSRDRTRHKVNSAGGTGEGCGIGSGGGVTGDRPPGGDTGAGAWKRERRLVRSHTAKPRGSAVGEGXXXXXXGTAGRPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGDTGSSSVGSHERQPIIGIGQSSGRW 1399
RVFHVLEVRKVIGGHKQALANHACVRSSL+AMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQD NGKALVSLKNLTAERYWNARWQREWETKYHDPLVGIKRQEQEYIALGALDIGM+RRRAQRVRAALKERESRPEFDP+RRARERAQEFVVRRRRG AEERCFGGRP+TAFGATN +AVV HHQ +H+KDGGPREGQ AALARGE GHG RDRTRHK NSA G G+G GVTGDRPPGGD GAGA KRERRLVRSHTAKPRG+A G GTAGRPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGD GSSS SHERQPII IGQSSGRW
Sbjct: 4 RVFHVLEVRKVIGGHKQALANHACVRSSLRAMSASVHEAEVLLNAAPTAIDPDDQLSRRTCIPDDDPRVEAIVPMMEQDDNGKALVSLKNLTAERYWNARWQREWETKYHDPLVGIKRQEQEYIALGALDIGMERRRAQRVRAALKERESRPEFDPVRRARERAQEFVVRRRRGLAEERCFGGRPRTAFGATNNYVAVVKHHQTDHTKDGGPREGQEAALARGETGHGGRDRTRHKTNSACGNGKGXXXXXXXGVTGDRPPGGDAGAGASKRERRLVRSHTAKPRGAAARGGGSG---GTAGRPRSTFATCPRFPEESGCWDENFTVRALSRLAKHDPPVFDYTEGALDSIAKGDAGSSSDSSHERQPIIRIGQSSGRW 379 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1683.3830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1683.3830.1 >prot_E-siliculosus-1a_F_contig1683.3830.1 ID=prot_E-siliculosus-1a_F_contig1683.3830.1|Name=mRNA_E-siliculosus-1a_F_contig1683.3830.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=391bp MADDAVDATHSRVFHVLEVRKVIGGHKQALANHACVRSSLKAMSASVHEAback to top mRNA from alignment at E-siliculosus-1a_F_contig1683:8358..13419- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1683.3830.1 ID=mRNA_E-siliculosus-1a_F_contig1683.3830.1|Name=mRNA_E-siliculosus-1a_F_contig1683.3830.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5062bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1683:8358..13419- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1683:8358..13419- >mRNA_E-siliculosus-1a_F_contig1683.3830.1 ID=mRNA_E-siliculosus-1a_F_contig1683.3830.1|Name=mRNA_E-siliculosus-1a_F_contig1683.3830.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2346bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1683:8358..13419- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |