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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1053.382.1 vs. uniprot
Match: D8LRF8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF8_ECTSI) HSP 1 Score: 434 bits (1117), Expect = 1.010e-146 Identity = 247/268 (92.16%), Postives = 254/268 (94.78%), Query Frame = 1 Query: 1 QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMINNEGPFDVNFTDTVFSDNWSGGNGGGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLERNEAGAQGGGMAVDGGVLRTAGCGFSGNVAGRGGAIAAAGEDXXSAAVVFVSGGYMRGNSAELSSWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 804
QVDVLDSVFTGNFASD+ASWSSS+ H GGAL+V GQAAVSIK+SSFTGNGAEG XXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMI NEGPFDVNFTDT FSDNWSGGNG GLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLE NEAGAQGGGMA+DGGVLR AGCGFSGNVAGRGGAIAAAGED SAAVVFV GG+MRGNSAEL +W LWYGYGGGLFAQDGAQAVLDGVALDGNSAGF
Sbjct: 251 QVDVLDSVFTGNFASDSASWSSSLSHVGGALYVFGQAAVSIKSSSFTGNGAEGXXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTAFSDNWSGGNGAGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLEGNEAGAQGGGMAIDGGVLRAAGCGFSGNVAGRGGAIAAAGEDDDSAAVVFVRGGFMRGNSAELGAWGLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 518
BLAST of mRNA_E-siliculosus-1a_F_contig1053.382.1 vs. uniprot
Match: A0A6H5JUM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM3_9PHAE) HSP 1 Score: 412 bits (1060), Expect = 1.250e-133 Identity = 242/268 (90.30%), Postives = 246/268 (91.79%), Query Frame = 1 Query: 1 QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMINNEGPFDVNFTDTVFSDNWSGGNGGGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGGGVWVSGDGEMAVQAEDCHLERNEAGAQGGGMAVDGGVLRTAGCGFSGNVAGRGGAIAAAGEDXXSAAVVFVSGGYMRGNSAELSSWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 804
QVDVLDSVFTGNFASD ASWSSSV HAGGAL++ GQAAVSIK+SSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMI NEGPFDVNFTDTV SDNWSGGNGGGLWAFL AGNL LLRTNFSNNAVAYREGFFDVP SHRGGGVWVSG+GEM VQAE CHLE NEA AQGGGMAVDGGVLR A CGFSGNVAGRGGAIAA XX VVFVSGGYMRGNSAEL SWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF
Sbjct: 101 QVDVLDSVFTGNFASDMASWSSSVSHAGGALYIVGQAAVSIKSSSFTGNGAEGAXXXXXXXXXXXXXXXXXXXXXLGNAQGGGIMIINEGPFDVNFTDTVLSDNWSGGNGGGLWAFLNAGNLILLRTNFSNNAVAYREGFFDVPGSHRGGGVWVSGNGEMTVQAEGCHLEGNEADAQGGGMAVDGGVLRAADCGFSGNVAGRGGAIAAXXXXXXXXXVVFVSGGYMRGNSAELISWNLWYGYGGGLFAQDGAQAVLDGVALDGNSAGF 368
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 804 |
| Model size | 806 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1053.382.1 >prot_E-siliculosus-1a_F_contig1053.382.1 ID=prot_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=268bp
QVDVLDSVFTGNFASDTASWSSSVFHAGGALFVSGQAAVSIKASSFTGNG
AEGAGAAYFYGSNSISVEGSSFVGNLGNAQGGGIMINNEGPFDVNFTDTV
FSDNWSGGNGGGLWAFLTAGNLTLLRTNFSNNAVAYREGFFDVPNSHRGG
GVWVSGDGEMAVQAEDCHLERNEAGAQGGGMAVDGGVLRTAGCGFSGNVA
GRGGAIAAAGEDDDSAAVVFVSGGYMRGNSAELSSWNLWYGYGGGLFAQD
GAQAVLDGVALDGNSAGF back to topmRNA from alignment at E-siliculosus-1a_F_contig1053:996..3455- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1053.382.1 ID=mRNA_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2460bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:996..3455- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTTGACGTGCTCGACAGCGTCTTCACCGGGAACTTCGCCTCCGACAC
GGCGAGCTGGTCATCGTCTGTGTTTCACGCAGGAGGAGCCCTCTTCGTCT
CCGGTCAGGCGGCGGTCTCGATCAAGGCGTCCAGTTTTACCGGCAACGGA
GCGGAGGGCGCTGGTGCCGCGTATTTTTATGGCAGCAACAGTATTTCCGT
CGAGGGCTCGTCGTTTGTGGGGAATCTCGGAAACGCCCAAGGAGGGGGAA
TCATGATCAACGTGAGTGATGAGTGTTAACCTTAACCCTCACGCTGGGTC
TAAGCTTGGTTTTTGTAGGGGGTACGGGGTTAGGCATAGGAACACGAAGC
CCTCCATCTCTTTCAAGCTTCGCGAAGAACGCGGTCCGTCTTGAAACTGG
GCCGGTTGGTATTGCGTGTGTACGAGTGGTTGAGTGAGGATTAAGGGTTC
GCAACGTTGTTCGTCCCCATGCCTTTCTTGATGGAAGAGTTTTAGTGACG
GATGTATGTGTGTTGCAGAGTTTTCGACCCACGCAATGTGATACATGTAG
GTACTATTTATATTTTCTAAAAAATGAAGGAAAAAAGACGCCTCCACGTA
TGTACAAGAGAATCTGGGAGTGAGCCATGAAGTTAATGCTCAACAATTAT
ATATGGTTAATATCTTGGCCATAACAACAGGTGCTTAGTTGCGATTTCAA
TACTTCCAACCTGATTAGTATGCACGCGAGCCGTGAGCATTCGGCGGTCA
CGCACTGTGGCGCCTCACGGCGTCGGGGGTTGACCTGAAACAGTGCTCTG
CCTGTGTGCTGCGTGGTTTGTGACGTGGTTTGCGACTGTTGCACGACAAA
CTGATGTTTGAAGCAGTACGTGGGCCTGTGGCCCCCCCTGGTGGACACCT
TACAGTACCTGCGGCGGTGGCTACATGTACGGTGTACGAGGGTTGTCAAG
ACAAGCCTATATATTTACACACACTCTTTTTTTGTTTTTCTACCTCAGTA
ATATCTTCATGTGTACGCTCTCTTTAACGATCTATCATTAACCGCCGTAC
CGCCGCTAGTGCCTGTCGTTGTATACCCTATGCATGGCTCGTCTCCATTC
CGCTAGGGAGACGGTCACGAAGACTACATGAGCCACACCCCGGTGATGGT
GAACGAACGCCCTAGAGAAAGCGGGCTCACGGTCTAGCGTACTTGCTGGG
GGTATGTTATCTTGTGTCACCCTACTAACGCCTTCCGCATGTGTGTGTTG
TCCCACGCCACGCATCTCGTTTTTTGACCGCACCCACTCGTTTTTTGACC
CCACCCACTCGCTTCCCCCCCCCCCTCGGTGTTTGCCATCGGGATTGGGT
TTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAACTGACTTCGTGAA
CTCGGCAACCTTTTTTTTTACCTCTGTGTTTTTTTTTGGCGGTAACCATA
GTGGTGGTCGAGTAGATCATGTTGTGAGGGGTGGAGAAACCTCACTCCGC
GCAAGGGGGATGATCGCACCACGTTGTGTTAAAATGGTCAAGCATCCTCG
AGGCAGTTACACAGTGCTTGTAACTGTCTCTGGAAGTGAACGCACCAGAA
AATGAATTAAGTCATACGCAGCTTTCATCAGTACGCAAAGAAGTAAGCAC
AAGATGCCGAACACCCTTAGCAGGATGCAGCGCACACTTCATGCGACTCG
CCGAATACCTCACGGTGCTTCGCGCTTGGTGAAGTGAGAGCCTGGCCCGG
TGAGAAGCCGGCGTGCCTCATCCCGGCTTTGTAGGGATGCGAGGTCAATG
GTCTAATGACTACGGCATGCACAAATATGAGTACACCCCCCCCCACTCGC
TTTTTTCGGAACTCCCCGCCGGTGGTCTTTCTTTTTTTTTTTTCTCTATC
TCTCGCGCCCCTCAGAACGAAGGTCCCTTCGACGTCAACTTCACGGATAC
GGTTTTTTCGGACAACTGGTCCGGCGGCAACGGCGGGGGGCTGTGGGCAT
TCCTCACCGCGGGCAACCTGACCCTCCTCCGCACCAACTTCTCCAACAAC
GCGGTCGCGTACCGGGAGGGCTTCTTTGACGTCCCAAATTCTCACCGCGG
CGGAGGCGTTTGGGTCTCCGGGGACGGGGAGATGGCCGTCCAGGCGGAGG
ACTGCCACCTGGAGAGGAACGAGGCCGGCGCGCAAGGGGGCGGGATGGCC
GTCGACGGCGGCGTGTTGCGCACGGCCGGCTGCGGGTTCTCGGGCAACGT
GGCCGGTCGCGGCGGCGCGATCGCCGCGGCGGGGGAGGACGACGATTCAG
CGGCGGTGGTCTTCGTGAGCGGCGGTTACATGCGGGGGAACTCCGCGGAG
CTCAGCTCCTGGAACCTCTGGTACGGGTACGGGGGCGGCCTGTTCGCCCA
GGACGGCGCGCAGGCGGTCCTGGACGGGGTCGCCTTGGACGGGAACTCCG
CGGGGTTCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:996..3455- >mRNA_E-siliculosus-1a_F_contig1053.382.1 ID=mRNA_E-siliculosus-1a_F_contig1053.382.1|Name=mRNA_E-siliculosus-1a_F_contig1053.382.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1608bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:996..3455- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGTTGACGTGCTCGACAGCGTCTTCACCGGGAACTTCGCCTCCGACAC
GGCGAGCTGGTCATCGTCTGTGTTTCACGCAGGAGGAGCCCTCTTCGTCT
CCGGTCAGGCGGCGGTCTCGATCAAGGCGTCCAGTTTTACCGGCAACGGA
GCGGAGGGCGCTGGTGCCGCGTATTTTTATGGCAGCAACAGTATTTCCGT
CGAGGGCTCGTCGTTTGTGGGGAATCTCGGAAACGCCCAAGGAGGGGGAA
TCATGATCAACCAGGTTGACGTGCTCGACAGCGTCTTCACCGGGAACTTC
GCCTCCGACACGGCGAGCTGGTCATCGTCTGTGTTTCACGCAGGAGGAGC
CCTCTTCGTCTCCGGTCAGGCGGCGGTCTCGATCAAGGCGTCCAGTTTTA
CCGGCAACGGAGCGGAGGGCGCTGGTGCCGCGTATTTTTATGGCAGCAAC
AGTATTTCCGTCGAGGGCTCGTCGTTTGTGGGGAATCTCGGAAACGCCCA
AGGAGGGGGAATCATGATCAACAACGAAGGTCCCTTCGACGTCAACTTCA
CGGATACGGTTTTTTCGGACAACTGGTCCGGCGGCAACGGCGGGGGGCTG
TGGGCATTCCTCACCGCGGGCAACCTGACCCTCCTCCGCACCAACTTCTC
CAACAACGCGGTCGCGTACCGGGAGGGCTTCTTTGACGTCCCAAATTCTC
ACCGCGGCGGAGGCGTTTGGGTCTCCGGGGACGGGGAGATGGCCGTCCAG
GCGGAGGACTGCCACCTGGAGAGGAACGAGGCCGGCGCGCAAGGGGGCGG
GATGGCCGTCGACGGCGGCGTGTTGCGCACGGCCGGCTGCGGGTTCTCGG
GCAACGTGGCCGGTCGCGGCGGCGCGATCGCCGCGGCGGGGGAGGACGAC
GATTCAGCGGCGGTGGTCTTCGTGAGCGGCGGTTACATGCGGGGGAACTC
CGCGGAGCTCAGCTCCTGGAACCTCTGGTACGGGTACGGGGGCGGCCTGT
TCGCCCAGGACGGCGCGCAGGCGGTCCTGGACGGGGTCGCCTTGGACGGG
AACTCCGCGGGGTTCAACGAAGGTCCCTTCGACGTCAACTTCACGGATAC
GGTTTTTTCGGACAACTGGTCCGGCGGCAACGGCGGGGGGCTGTGGGCAT
TCCTCACCGCGGGCAACCTGACCCTCCTCCGCACCAACTTCTCCAACAAC
GCGGTCGCGTACCGGGAGGGCTTCTTTGACGTCCCAAATTCTCACCGCGG
CGGAGGCGTTTGGGTCTCCGGGGACGGGGAGATGGCCGTCCAGGCGGAGG
ACTGCCACCTGGAGAGGAACGAGGCCGGCGCGCAAGGGGGCGGGATGGCC
GTCGACGGCGGCGTGTTGCGCACGGCCGGCTGCGGGTTCTCGGGCAACGT
GGCCGGTCGCGGCGGCGCGATCGCCGCGGCGGGGGAGGACGACGATTCAG
CGGCGGTGGTCTTCGTGAGCGGCGGTTACATGCGGGGGAACTCCGCGGAG
CTCAGCTCCTGGAACCTCTGGTACGGGTACGGGGGCGGCCTGTTCGCCCA
GGACGGCGCGCAGGCGGTCCTGGACGGGGTCGCCTTGGACGGGAACTCCG
CGGGGTTC back to top
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