mRNA_E-siliculosus-1a_F_contig1053.384.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1053.384.1
Unique NamemRNA_E-siliculosus-1a_F_contig1053.384.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1053.384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1053contigE-siliculosus-1a_F_contig1053:8450..12015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size288
Model size527
Exons2
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1053.384.1prot_E-siliculosus-1a_F_contig1053.384.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1053 8689..12015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.7771692-UTR-E-siliculosus-1a_F_contig1053:8449..86881622927554.7771692-UTR-E-siliculosus-1a_F_contig1053:8449..8688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1053 8450..8688 +
1696318583.3613303-UTR-E-siliculosus-1a_F_contig1053:8449..86881696318583.3613303-UTR-E-siliculosus-1a_F_contig1053:8449..8688Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1053 8450..8688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927554.8918304-CDS-E-siliculosus-1a_F_contig1053:8688..87501622927554.8918304-CDS-E-siliculosus-1a_F_contig1053:8688..8750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1053 8689..8750 +
1696318583.3694103-CDS-E-siliculosus-1a_F_contig1053:8688..87501696318583.3694103-CDS-E-siliculosus-1a_F_contig1053:8688..8750Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1053 8689..8750 +
1622927554.9013886-CDS-E-siliculosus-1a_F_contig1053:11789..120151622927554.9013886-CDS-E-siliculosus-1a_F_contig1053:11789..12015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1053 11790..12015 +
1696318583.3775523-CDS-E-siliculosus-1a_F_contig1053:11789..120151696318583.3775523-CDS-E-siliculosus-1a_F_contig1053:11789..12015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1053 11790..12015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1053.384.1

>prot_E-siliculosus-1a_F_contig1053.384.1 ID=prot_E-siliculosus-1a_F_contig1053.384.1|Name=mRNA_E-siliculosus-1a_F_contig1053.384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=96bp
MPPCRSSQRPRGHGSKEEAAGKRMAASNCAANTKACRSSVCINRTCSSPV
VATCRDDGGGVPQRRGQLQKRQQEERRGGGISLDRRRHRRHRRGPA
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mRNA from alignment at E-siliculosus-1a_F_contig1053:8450..12015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1053.384.1 ID=mRNA_E-siliculosus-1a_F_contig1053.384.1|Name=mRNA_E-siliculosus-1a_F_contig1053.384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3566bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:8450..12015+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCGTTGAGAGGATAGCTTATCCTCCCGAGACATCACGGAGGGTTTCAGGA
TATCAGCAGAAGGAGACAGAGAAGAGCGCTGCGTGTGTGGGGTGTGGCAA
TTGATCAGCGGTTGGTCCTGCGGCGGGAGACATTTACGCCATTGCAGCGA
CAGAGGGGGGGGACCAGGCCATCATCAGCAAGCTGCAGCAGCAAATTTTG
AACAGCGGCGGCGGCCGGCCCGCGCCTTGCGCGACCCCGATGCCTCCATG
TAGGTCATCGCAAAGGCCTCGAGGACACGGATCCAAGGAAGAGGCGGCGG
GGTGAGTGGCTTCGGTAGTAGAGAGAGAGCCCCACTGGTTTGGTGAAATC
ATCTCGCACTTGAGCAGACTCAAAAATCACAGCAGCGTAAATTGCCCCTG
TGGTGCGCCCCCACACGACCTATTGAATTTGTTCGAACGTCGAGCGTACA
TCACTTGCGTACATGTGGATATCTGTCTCCTATTTGAGGCGTGTTTTCTA
CCACCGTTAAGTGGTGCCGGTAGTCGCAAGCACCTTCGGAGAAGAACGGC
ATGCAGAGCCTCTGCGTTTCAAGCGCTTGTCGGGAAACCCGGCAGGATTA
CCGGCAGATCAAAGCTGAGATCAGAGATCATCCGTCTCTTGTTCTGTGTT
AGGCCGATTTGGACCAGATCATGGATCAAAGGCTGTGATTTTGATCCCTC
CAACAAGAGCATCGTCTCTGCATGGCGTGTGTGTGAGAGAATAATTGTGT
GTGCATCGCGAGGCTTGTGCGCAGAGAGATTTCACTACTGCTTTGCTGCA
GATTCAACGCGGACTTGTGTCTCGGCACCTGGACGTGCACTCAGTGCGTG
TGTGTTACGTATATATATATCCAGCATTGGGGTATGCATGTCAAAAATCC
CAGGGTGACTTTGTATGACCGTTGTCTCCAACAGCAGCAGTCTCCGATAG
TGCCCACTTTTGTCCCTGTCTCCAGTACCGCTTTTGCGGCTAAACCGGTG
TTCACAGCTTGCCAGGGAGACGACAGAGCAGTGCCTGCTGTCTGCCACAC
TTACGAAGCCCTTGGTAAGCGCCCTTGGCATGTTTTAAACGTCCGTCCAT
GTCGGTACCAAGCCTAGTCTACACGCCCGTCGTCGGAGCGAGAGAAAATT
CGAAAATTCCGAACTGCCTCGGAGATCGCTGATAATTGTTCGGTGTCTTG
GGGGGCTTGTTCAACAAGCATTGAACCGTGAACAGCGTGAGATGAGGAGG
ACGCGTCACGTGTTCCCGGTGACACTTGGAAGTGAAGACTGTTATGCATA
CATGCATATGCATGCATGTATACAACATGCATGCATACTCCGTATGCATA
TATCGCAAGCAATGACAGGGGCAGTGCCACCAGCAGAATCTCGGCAACAT
TAACTACCTGTGGGCTCCCCCCGCAAACTTGACCTTTGCAACACTGCGTA
CCATGAGGTTCACTACTGCTGCATGTTGTGTTCGTCCTATCGTACGTACT
TCGAAGTAGTTATTCAAGGCGACTAGGTTGCACTAGATTTACCTTGCTGT
CTTTTCCATGATTTAGCTGGTCTCTTTTTGTGTGATGCACCACCTCCGAA
TATTTTATTATTGCAAGGCTTTTTTTCCGGCTGTGATGAGGCACAGAAGC
TACTGTAGTTAGAGTACTTGCATTGTATTATGCATACCTACGTTAGCCTG
TGACCACGGAAATTGGCCGAGTCAAGTGATGGATTAGTACGGAGAGATTG
AGACAGAAGGAGGTACTGGATAGAGAGACCGGGATGGTTTTTAATGTGAA
GACAACAACAACAACAACAACAACAACAACAACATACCTCCGCTGCTATG
CACGTGTTACGAGGAGCGTATGCATACACAGAAGTACTGCTGTACGTTAC
TTTATTTCGTCCCGCCAATTGGCTACAATACGCTGCTGTAGTCAACTCTC
CGGTAGATGCCATGTTTGACCCACCAGCCGGGGTCACGCACGGTTGAAAA
TATGTACAAGTAGTTTTTTTTGTGCTCCACCCCTCCCCTGTGATTTTTTC
CAATTGATTTTTCCCTTCAACTTGTTGGAAAGCACAAGAAAGAAGGTTAA
GGTTTTGATGGTCAATGAATCCCTCGTGAGTTTCTCTCGACCATGCAACT
TTCCCACCTCTGCTAGATTTGCGACTTTTTGCACTTCACAGAGATTTGAA
CCCGCAATTTAGTGCTGTGAGTCAGAAAGAAGCTTTCGGGGTTGCATGCA
CACTTATTAAGTTCACCATCGGCGACGCGACCAGCTGTTGACTGCAACAC
CTCAACACAACAATGGACGATGCACTCAAGCCACGGCAGTTGTGAGGTTC
CTGTGCCTGAAAGAAAATTCAAGCTTCTTCATTTAAAAAGTCGTTGCCCT
CTGGGAGCACATGTACGAGAGAAATTGCTTCTTTATAAATATCTTCGCGC
GGAACGCTCCGCTATCAAGCTATGCATGGACAACTTCCTGCGCAACTACC
CGATTCGCGGACTCGGCGTAGTCGCAGCCCTTCCCTTTTGGTTTAGAGAA
CACATTTGCTAGAAATTATACTTCTTGAAAGTAATTTAATTTCTATCTCA
AGCTCGTGACACGTGCCCCCGAAGAATTCTACTGATGTTTTTTTGCTTGC
AGTGTCAACAATGGTTGACGAGACATCTGGTGCATGTCTATGATACGACC
AACAACGTCATCACACGCAGTTTTTTTTGTCCACCATCACAAGAGTACCA
TGTGCCTCGTCTTGGCCTCGGCACATGCGGCAGCAGGTCGTGTTACGCCT
GCGGGAGAGATGTAGACCAGGCTTGTGTTCAGGAGTACAGCAGCAGCATT
ACCAAGGCATGTTTGTCGTCGTCGACAGAAACTGACACGAAGAAGCCCAA
TATATTGACAATCTTTATCTTTTGCTGTCCCCAGTATCAAGTCCGGTATC
ATGCTCAATACCGACTTTTTTACGATTGTTTTTTGGCTCAAAGAAATCTG
CCTCTATGGATACGTTGCGCTATCCGGGCGGCGGTGTGTAGCGATGGTCT
TGAAGTGTTTGGTGTTTCATTGAGTTAAGATCCGTTGATGGATAGGTACC
GTAGCTCGCTTCGCGCATTTGAGCTGAAGGAAGGGTAGGATTCCTTGTCC
TTCAGGAGGCACCCAACACGCGTGACAATCAATCGCCGTGCTCCTCTCCT
TGATGACAGCTGCGGGCGTGTCGACGTAAGCGGTGTAAAAAAACGGCGTC
CTATGTGTGCCATCTGTCTTATCTGGCCTTCATCTAACGGTGCCCTCCCC
CCCCCCCACTCCCCCCCGCGTGCTGTTTCGCCCGCGTCAGAAAAAGGATG
GCCGCTAGTAATTGTGCTGCCAACACCAAGGCGTGCAGAAGTAGCGTTTG
TATAAATAGGACATGTTCGAGTCCAGTCGTAGCGACATGCCGTGACGACG
GTGGCGGCGTACCACAACGTCGTGGACAACTACAGAAACGACAACAAGAA
GAGCGGCGTGGCGGCGGTATTTCCCTCGATCGGCGTCGACATCGTCGGCA
TCGCCGGGGGCCGGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1053:8450..12015+

>mRNA_E-siliculosus-1a_F_contig1053.384.1 ID=mRNA_E-siliculosus-1a_F_contig1053.384.1|Name=mRNA_E-siliculosus-1a_F_contig1053.384.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=576bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1053:8450..12015+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCTCCATGTAGGTCATCGCAAAGGCCTCGAGGACACGGATCCAAGGA
AGAGGCGGCGGGATGCCTCCATGTAGGTCATCGCAAAGGCCTCGAGGACA
CGGATCCAAGGAAGAGGCGGCGGGAAAAAGGATGGCCGCTAGTAATTGTG
CTGCCAACACCAAGGCGTGCAGAAGTAGCGTTTGTATAAATAGGACATGT
TCGAGTCCAGTCGTAGCGACATGCCGTGACGACGGTGGCGGCGTACCACA
ACGTCGTGGACAACTACAGAAACGACAACAAGAAGAGCGGCGTGGCGGCG
GTATTTCCCTCGATCGGCGTCGACATCGTCGGCATCGCCGGGGGCCGGCG
AAAAAGGATGGCCGCTAGTAATTGTGCTGCCAACACCAAGGCGTGCAGAA
GTAGCGTTTGTATAAATAGGACATGTTCGAGTCCAGTCGTAGCGACATGC
CGTGACGACGGTGGCGGCGTACCACAACGTCGTGGACAACTACAGAAACG
ACAACAAGAAGAGCGGCGTGGCGGCGGTATTTCCCTCGATCGGCGTCGAC
ATCGTCGGCATCGCCGGGGGCCGGCG
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