mRNA_E-siliculosus-1a_F_contig10.37.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 914 bits (2362), Expect = 0.000e+0 Identity = 457/518 (88.22%), Postives = 475/518 (91.70%), Query Frame = 1
Query: 226 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST-VGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLFLADEDYGDSAHGEGGGSFSMNPLSLSL----PLLVFLLTSLGCFFFRYCRNRETLATECQKHGSSQTECDI 1764
MT PGGRA+VVALLACLASVV AA VYP DPHLDWSEWDDPPASHL +DPAKS MDS+GR+HVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGK+AMEDIASKYSFH IGDSTSRRLGESFVSIFTGRGS HP+VQRD +FSSGNLKVHFYWAPLCSGPESVGAML TVMDAV A KDGKRAVIITA+GVHDAFELQHAANG GSPSY+S LP D+VEKDGMRAAALGACRD TTQLVR AAATAVPGT APPVEEEQSPGD + QLPNVST VG HETS+KQAAGIPPNNVRGGSVGAG EDAL ASAPPAASGPLQPLLFLMQNNRYPPGS+ENAFQEDLHRIQRQAVGEWEASEGSKG+ GERGLFLVDDSVGLYGNLSCYR ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTL LA+EDYGDSA GEGGG FS+NPLSLS PLLVFLL L CF FRYCRNRETLA ECQKHG + +EC I
Sbjct: 1 MTRIPGGRAIVVALLACLASVVCAASVYPSDPHLDWSEWDDPPASHLNNDPAKSIMDSNGRQHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLLLANEDYGDSADGEGGGRFSINPLSLSXXXXXPLLVFLLIPLACFLFRYCRNRETLARECQKHGRNPSECYI 518
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 850 bits (2197), Expect = 5.110e-302 Identity = 441/517 (85.30%), Postives = 451/517 (87.23%), Query Frame = 1
Query: 226 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST---VGPHETSEKQAAGIPPNNVRGGSVGAGNEDAL-GASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLFLADEDYGDSAHGEGGGSFSMNPLSLSLPLLVFLLTSLGCFFFRYCRNRETLATECQKHGSSQTECDI 1764
MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWD PPASHLKDDPAKSTMD GR+HVD+AGVRRL H G PC +ERLGKDAME IASKYSFHLIGDSTSRRLGESFVSIFTGRGSIH I QRDRDFSSGNLKVHFYWAPLCSGPESVGAMLA+VMDAVRA KDGKRAVIITAYGVHDAFEL HAANG GSPSYKSALP DVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVST VGPHETSEKQAAGIPP+NVRGGSVGAGNED L GASAPPAASGPLQPLLFLMQNNRYPPGS+ENAFQEDLH IQRQ VGEWEASEGSKG+GGERGLFLVD+SVGLYGNLSCYR+ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPT+FLADEDYG SA GEGG SFSMN LSLSLPL VFLL SLGCF FRYCRNR TLA ECQKHG S ECDI
Sbjct: 1 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDAPPASHLKDDPAKSTMDGGGRQHVDDAGVRRL--------------------------------HPAG-PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTVFLADEDYGHSADGEGGDSFSMNSLSLSLPLSVFLLISLGCFLFRYCRNRGTLAPECQKHGRSPNECDI 484
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 1.580e-124 Identity = 223/441 (50.57%), Postives = 270/441 (61.22%), Query Frame = 1
Query: 268 LACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDPAKSTMD------------SSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDG-KRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLP 1551
L C S V A P LDWSEW DPP + + D+ A S+M+ + G + A VR LV CA RL+++ D+CG E P +D YRL HM SG LPCGFEER + +ED+ASK++FH IGDST RRLGESFVSIFTG+GS H +V D DFS+GNL+ FYWAP C G ESVGA LATVMD V+ K G KR VIITA+GVHD++EL G S SY ALP D V+ +R A LGAC+ TT QLV+AAAA + A P E+ PN +T ET+ G + GA AA+ P PL+FLMQNNRYPP S E+ + E+L RIQR V EWEA EG++ E G++LVDDSV L+ NLSCYR+ NPIHF EPVKL+EGKMLWDLL LV+ S P
Sbjct: 18 LVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEELLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVM--AWADPTAEKGQWSKAVHASPNTTTRSTTETN-------------------GVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNED--AEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERESASP 435
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.020e-49 Identity = 150/413 (36.32%), Postives = 193/413 (46.73%), Query Frame = 1
Query: 427 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRA---------GKDG-----------KRAVIITAYGVHDAFELQHAANGRG-SPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHET---SEKQAAGIPPNNVRGGSVGAGNEDALGAS-------------------APPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERG-----LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1521
GV RLV+ CA +L L C + P QD YR+ M SG CGFE + + + D+A KY F IGDST+RRL ESFVSI +GR S HP+V D S G+LKV F WAP CS G + A V DA+ DG +R VI TA+GVHDA EL+ A + Y LP + V G AAAL CRD T +LV AAA + G+ G + ++ + GI +RGG G +E A+ S L+FL+QNN + P S + F + LHRIQ Q + E A +G + +FL+ D LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 228 GVHRLVSDCARQLMLPGFSCDE---PVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVD---GGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGG-GVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLV 633
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.260e-48 Identity = 135/409 (33.01%), Postives = 186/409 (45.48%), Query Frame = 1
Query: 313 RDPHLDWSEWDDPPASHLKDDPAKSTMD---SSGRRHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLV 1530
D + W WD+ S + S +D S G+ LV CA RL+L C K +R+ M SG LPCGFE RL ED+AS+Y+ H +GDSTSRRL ESF+SI TG S H R+ + L+V+F+WAP C ++ L +MD +A G+RA+I+TA+GV D+ ++G G AALG C D LV+ A Q P G N+ A++PP L+FL+QNN + PGS ++ F DLH+IQR+ V +G + ++LV D ++ LSCYR + IHF++PVKL+EGKMLWDL+ LV
Sbjct: 23 NDQRVSWDGWDEQSQSPDPTTNSPSVVDLDVDSSHGSEYRGGLHDLVRQCAERLDLPGYTCEKNS---SSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNES--LHEIMDN-QALDGGRRAIIVTAFGVWDS------SHGGGDE------------------AALGVCADAVRSLVQVA----------------QPPPAGSTTAENI-----------------------------------AASPP--------LVFLLQNNPFLPGSEQDLFLRDLHQIQREIVD----------SGEQEAVYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELV 332
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 191 bits (485), Expect = 1.200e-47 Identity = 152/436 (34.86%), Postives = 192/436 (44.04%), Query Frame = 1
Query: 427 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLATVMDAV-----RAGKDG----------------KRAVIITAYGVHDAFELQHAANGRG-SPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQL--PNVSTVGPHETSEKQAA-------GIPPNNVRGG-------------SVGAGNEDALGASAPPAASGPLQPL-----------LFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKGNGGERG----------------LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1521
GV RLV+ CA +L L C + P D YR+ M SG CGFE R+ + + D+ASKY F IGDST+RRL ESFVSI +GR S HP+V D S G+LKV F WAP CS G + A V DA+ G D +R VI TA+GVHDA EL+ A + Y LP V DG AAAL CRD T +LV AA P++S + A GI +RGG V D G++ +FL+QNN + PGS + F + LHRIQ Q + E A + + G E+ +FL+ D LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 200 GVHRLVSDCARQLVLPGFGCDE---PVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVG---GGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.900e-34 Identity = 105/280 (37.50%), Postives = 146/280 (52.14%), Query Frame = 1
Query: 589 MEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHPIVQRDRDFSSGNLKVHFYWAPLCSGPES-VGAMLATVMDAVRAGKDGKRAVIITAYGVHDAFELQHAANGRGSPSYKSALPHDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTVGPHETSEKQAAGIPPNNVRGGSVGAGNEDALGASAPPAASGPLQPLLFLMQNNRYPPGSMENAFQEDLHRIQRQAVGEWEASEGSKG---NGGERGLFLVDD 1416
+ED++S+Y FH +GDST+RRL ESFVSI TG+ S H +V D SSG+LKV F+WAP+C S + A + ++ A D RA+IITA+GVH+A L G P Y + HD ++ AAAL C + T+QLV A TA A +E+ G R L +V+ G + + GG V +D L PL+FL+QNN Y PGS E+ F E LH +Q + V +G+K +G G+F++DD
Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDA-RAIIITAFGVHNAHRLYGDQAGT-LPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTAGRSASA---NQEKLYSPGHRGL-DVADEGDPKFGRPRGTW-----TGGGDVSLSIDDEG-----------LPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVV-----RQGAKDIARHGENAGVFVLDD 331 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10.37.1 >prot_E-siliculosus-1a_F_contig10.37.1 ID=prot_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=514bp MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDDPPASHLKDDback to top mRNA from alignment at E-siliculosus-1a_F_contig10:38331..45310+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10.37.1 ID=mRNA_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6980bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:38331..45310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10:38331..45310+ >mRNA_E-siliculosus-1a_F_contig10.37.1 ID=mRNA_E-siliculosus-1a_F_contig10.37.1|Name=mRNA_E-siliculosus-1a_F_contig10.37.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3084bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10:38331..45310+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |