Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)
HSP 1 Score: 510 bits (1313), Expect = 2.650e-176
Identity = 254/266 (95.49%), Postives = 258/266 (96.99%), Query Frame = 1
Query: 304 TSFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMD 1101
+SFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPC+YWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAK+MPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD RLAKHMK+GLAAMD
Sbjct: 60 SSFGKRKADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRLAKHMKQGLAAMD 325
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)
HSP 1 Score: 483 bits (1243), Expect = 6.580e-167
Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1
Query: 358 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 1104
MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKV+ATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT
Sbjct: 1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKKGLAAMDT 249
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)
HSP 1 Score: 245 bits (626), Expect = 5.960e-74
Identity = 129/247 (52.23%), Postives = 169/247 (68.42%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRL 1065
A++FL E ++D F VLPGDDVT+ + LRLG GLV + V T AG+LRYRPP YW++ N +RY A V+D V+G+V DR A+ Y+++I S A LGML FDGASKR++PNL+ GSLV+CRV + NKD+E LTC + H +KKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K +PFE+AAG+NG WV+SGS +TI+I NAILNSE +TD RL
Sbjct: 2 AEEFLLSTEKSIDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGST-VSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSGSCHNTILITNAILNSEGLTDAQIEAMVDRL 247
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A5D6XUT6_9STRA (KH_dom_type_1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUT6_9STRA)
HSP 1 Score: 244 bits (622), Expect = 4.030e-73
Identity = 118/236 (50.00%), Postives = 167/236 (70.76%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032
A FL + ++D F TVVLPGDDVT T+TTR ++LG GL Q + +V+ T AGVLRYRP YWV+ N +RY A ++D V+G+V DR A+ Y+VNI + +A LG L FDGA+KR++P+LR G+LV+ RV+ +KD+E E+TC + + SKKDWMTG + +GEL GG + + S+ L+K L + DC VL +L + +PFE+A G+NG WV+S S +T ++CNAILN+E +T
Sbjct: 19 ATKFLEEAQRSVDFTFAPTVVLPGDDVTAALTKTTRCVKLGAGLKQLSDQRVVCTNAGVLRYRPANRYWVDYNYKRYAASLDDGVIGVVTDRNAEIYRVNIGAASSATLGALAFDGATKRNRPSLRIGALVYARVSKTHKDLEPEITCEAPANLSKKDWMTGLAVYGELSGGYVFKTSVTLAKRLLQEDCAVLAALGRRLPFEIAVGVNGVVWVNSRSSKNTTIVCNAILNAEALT 254
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL)
HSP 1 Score: 243 bits (620), Expect = 8.500e-73
Identity = 127/252 (50.40%), Postives = 170/252 (67.46%), Query Frame = 1
Query: 313 GKRKADD------------FLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032
GKRKAD+ FL + +D F TVVLPGDDVTE T+T++++RLG GL D+++ T AGVLRYRPP YWVE + +RY V+D V+G+V DR A+ Y+VNI + + LG L FDGA+KR++P+LR GSLV+ RV N DME ELTC ++ + +KKDWMTG S +GEL GG + + S+ L+K L + D VL++LAK + FE+A GLNG WV+S + HT V+ NAILNSE M+
Sbjct: 3 GKRKADEPIDATADDEASRFLEDAQRQVDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTCEASANMTKKDWMTGLSVYGELTGGYVFKTSISLAKKLLQDDSYVLQALAKSIAFEIAVGLNGIVWVNSRATKHTTVVTNAILNSETMS 254
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)
HSP 1 Score: 241 bits (616), Expect = 1.810e-72
Identity = 124/237 (52.32%), Postives = 166/237 (70.04%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTD 1035
A++FL E ++D FK VLPGDDVT+ ++ LRLG GL+ + + + +T AGVLRYRPP YW++ N +RY V+D V+G+V DR A+ Y+++I S A LGML FDGASKR++PNL+ G+LV+CRV + N+D+E LTC + H SKKDWMTG + +GEL GG + + S+ L+KSL K DC VL +L K MPFE+AAG NG WV+S S TI+I NAILNSE + D
Sbjct: 2 AEEFLLSTEKSIDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANG-NAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPD 237
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)
HSP 1 Score: 241 bits (615), Expect = 2.630e-72
Identity = 122/233 (52.36%), Postives = 164/233 (70.39%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSE 1023
A++FL E ++D F LPGDDVT+ T TR LRLG GL+ Q++V+ T AGVLRYRPP YW++ N +RY V+D V+G++ DR A+ Y+V+I G+ A LGML FDGASKR++PNL+ GSL++CRV KD+E +TC + H +KKDWMTG + +GEL GG + + S+ L+KSL + DC VL +L K +PFELA G+NG W++S S A TI+I NAILNSE
Sbjct: 2 AEEFLISTEKSVDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNSKSNADTILITNAILNSE 234
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
W4FDB9_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FDB9_9STRA)
HSP 1 Score: 241 bits (615), Expect = 2.890e-72
Identity = 119/236 (50.42%), Postives = 166/236 (70.34%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032
A++FL E ++D FK LPGDD+T+ T T+ LRLG GLV ++V+ T AGVLRYRPP YW++ N +RY ++D V+G+V DR A+ Y+V+I GS A LGML FDGASKR++PN++ GSLV+CRV KD++ +TC + H +KKDWMTG + +GEL GG + + S+ L+KSL + +C VL+SL + +PFELA G+NG W++S S TI++ NAILNSE +T
Sbjct: 2 AEEFLLTAEKSIDLAFKTRTCLPGDDITQHITNVTQKLRLGAGLVATTDNRVVCTNAGVLRYRPPNRYWLDFNHKRYTPALDDGVVGMVVDRNAEFYRVDIGGSSFATLGMLAFDGASKRNRPNMQPGSLVYCRVVRAAKDLDACVTCEAPTHLAKKDWMTGLAIYGELTGGYVFKASIGLAKSLVQDECAVLESLGRAIPFELAVGVNGVVWLNSKSSQDTILVANAILNSEGLT 237
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)
HSP 1 Score: 240 bits (613), Expect = 4.720e-72
Identity = 124/253 (49.01%), Postives = 171/253 (67.59%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRLAKHMKK 1083
A++FL E ++D FK VLPGDDVT + T + LRLG GLV +VLAT AGVLRYRPP YW++ N +RY ++D V+G++ DR A+ Y+++I S A LGML FDGASKR++PNL+ GSLV+CRVA+ N+++E LTC + H +KKDWMTG + +GEL GG + + S+ L+KSL K +C VL +L + +PFE+A G NG WV+SG+ TI+I NAILNSE + + +L K+
Sbjct: 2 AEEFLLSTEQSIDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASG-TQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMVDKLISEYKR 253
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Match:
A0A024TLH3_9STRA (Ribosomal RNA-processing protein 40 n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TLH3_9STRA)
HSP 1 Score: 238 bits (607), Expect = 4.150e-71
Identity = 118/236 (50.00%), Postives = 166/236 (70.34%), Query Frame = 1
Query: 325 ADDFLRRQELAMDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMT 1032
A++FL E ++D FK LPGDD+T+ T T+ LRLG GLV ++V++T AGVLRYRPP YW++ N +RY +ED V+G++ DR A+ Y+V+I S A LGML FDGASKR++PNL+ G+LV+CRV KD++ +TC + H +KKDWMTG + +GEL GG + + S+ L+K+L + DC VL++L + +PFELA G+NG W++S S TI+I NAILNSE +T
Sbjct: 2 AEEFLLAAEKSIDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTCEAPSHLAKKDWMTGLAIYGELVGGYVLKTSIGLAKTLIQDDCIVLEALGRAIPFELAVGMNGVVWLNSKSNQDTILIANAILNSEGLT 237
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1052.379.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 2.65e-176 / Id = 95.49 Expect = 6.58e-167 / Id = 99.60 Expect = 5.96e-74 / Id = 52.23 Expect = 4.03e-73 / Id = 50.00 Expect = 8.50e-73 / Id = 50.40 Expect = 1.81e-72 / Id = 52.32 Expect = 2.63e-72 / Id = 52.36 Expect = 2.89e-72 / Id = 50.42 Expect = 4.72e-72 / Id = 49.01 Expect = 4.15e-71 / Id = 50.00 Sequence A0A6H5J8L0_9PHAE D8LG41_ECTSI A0A1V9Y536_9STRA A0A5D6XUT6_9STRA A0A8K1CT22_PYTOL T0R8U7_SAPDV A0A6G0XI83_9STRA W4FDB9_9STRA A0A1W0A9P5_9STRA A0A024TLH3_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 750 Model size 1733 Exons 7 Ec32 ortholog Ec-11_002030.1 Ec32 ortholog description RNA binding protein Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko00002,ko02000,ko03019 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. J EggNOG OGs COG1097@1,KOG1004@2759 EggNOG free text desc. nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription GOs GO:0000018,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000956,GO:0001775,GO:0002164,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006310,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008298,GO:0008408,GO:0009056,GO:0009057,GO:0009791,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016064,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016444,GO:0016445,GO:0016447,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019724,GO:0022613,GO:0030097,GO:0030145,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035166,GO:0035167,GO:0035327,GO:0042113,GO:0042254,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045190,GO:0045191,GO:0045321,GO:0045830,GO:0045911,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048542,GO:0048569,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051252,GO:0051641,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354,GO:2000026 KEGG Module M00391 KEGG Pathway ko03018,map03018 KEGG TC 2.A.29.23 KEGG ko ko:K03681,ko:K14684 Preferred name EXOSC3 Seed eggNOG ortholog 2880.D8LG41 Seed ortholog evalue 2.2e-134 Seed ortholog score 485.0 Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1052.379.1
>prot_E-siliculosus-1a_F_contig1052.379.1 ID=prot_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp
MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLR back to top mRNA from alignment at E-siliculosus-1a_F_contig1052:30132..34496-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1052.379.1 ID=mRNA_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4365bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:30132..34496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GTAGGCTATTTGCACTCTGCACGTTGGCGGGCTCGCCCAGGGAACCTTAC
CCGAGTGCTAGCTTGCCTAGAGTGTAGGCGACGACTGCTGTCACCATGAG
TTCCAGAAGAAATACGAAACAGCAACGCGGAGGTAAGAACATGACAATGG
CGATGGAGGAGGACTCCTCCGACGAAGATACTGGACCGGAAACCAT GCCC
AGCAACACCAAGACCGCGGCAGCGGCAGCAGCAGCGGCAGCAGCAGCAGC
AGCAGGAGCAGCGACGACAGAGCCACAGCACAGCAGCGATGGAAGCAGTG
ACAGTGATGACGGCGATGGTGATGACGATGACGACAGCACTAGTTTCGGC
AAGCGCAAAGCGGACGATTTTCTGCGGCGGCAGGAGCTCGCC ATGGACCC
CCGGTTCAAGGCCACCGTCGTGCTCCCCGGGGACGACGTCACCGAGACCA
CCACCCGCACCACCAGAAGCCTAAGGCTAGGCCCGGGACTGGTGCAGCAC
GCCCAGGACAAGGTCCTGGCCACTCGCGCCGGGGTGCTGAGATATCGCCC
CCCGTGCTCGTACTGGGTGGAGAGCAACGGGCGACGGTACGGGGCGAGGG
TGGAGGATCAGGTGCTGGGCATCGTGGAGGACAGGATGGCGGATTCCTAC
AAGGTCAACATATTCGGGAG GTGATCCATGCCTGCTGTGGCCATTGCTGT
TGGTAGCTGGTCTTGCGGCTTGTGGCTGTTGGGCTGGTGGCGTGTCATGG
CCTGGCTTGAGCTTGATACAGGTTGCCAAACGGAACGCGGTGTAACGTTC
TTGCTGGCGGTCTGCACACAGAAGAGTCTCTGCCGCGACGTTTGCGTAAC
TTAGCTACTTCGCTCCGTCGGCGTTCTTCCTTCTATCTCTCTAAATTACC
TGTTCCCTTTTGCTCCCCCCCTCACGCACGTATCTCAGCTGCGCAGCTTT
GCTGGGCATGCTGGAGTTTGACGGTGCTTCCAAGCGGAGCAAGCCAAACC
TCAGG GTAAGCGTTGTTTCTTGGTGCATTTACTGGGCCGTAGTCCCTGCT
GAACATGGACTTGCTCACAGTACTAAATATTTATTTGTTCCAGTTGGCGA
TCCCAGGTATAGGTTGTTGCAATTACACCGACCGCCGGCTGGGATACCAC
CTTACATAGAATGTTTTCTGCTTATGTTCGGCCCCACGGCTGTTTGGCTT
TGCTCTGATGGCGTCTGAAACGAGCTGTCACCTCGGAAGCTGTGGAAGTC
GGTCGCACGTCGCGTCGTTGACACAGCTAGCTTAAATGGCAGCCAAGATC
CGAGGCGACCCGGTTCTCGCAAGACGTTGGGATGCCACCGTTTAGAACGT
GCGCTCTCGCCGTGATCTCTTTCTGTTTTTTCCGCCCCGTAGGGCGTCCA
TACAACACTCCAGGACGTTCAATCCTGCACCATCGTTAATTTTTGTTGTG
CGTGCTCTTCTCCACTTGTTGTTTACCCCTGATGTTGTGGGTGCTGGCTC
GAGATATCGGCGACAAAGTGTTGTTGTATGTCCGGCAGGTACCCCGATCA
CGAAAGAGAAAGCGAGGCCTTTTCACCCCCGGACGTTTGTGTGTTCGTGG
AAAGATTGCATCCCCACCTCCAAGATTTTCCCCGGGTGCTCTCTCTGCTC
ATTCCGGTACACATTCCGCAAGAAGGGACGTGGAATGCAACAAGGAGAAA
ACCTCCCTGACCGCCGCCGCTCTTTCGGAGCACTTGTGGCTGTTCGATTG
ATCCGCTCATTGCATGAAGAGTAGACGGCTATACTTGAGTTTGAATACTT
GTGTGTCGCCATGTTGGGAAACAGTTTTCGGTATCTCCGTTGTTTTCACC
GTTGCGGACGTGGGCAGAAGACTTTTCACATCATGATGGGCTTGTAGCAC
ATGCATTCGATATCCCCTGTGCTTATGATGAAAAATATATGGTCTGAGCG
TCGGCCACACGAACCCATTGAAGATCATTGCGTGGGTTTTGTAGTAGTTG
TAGACCTTTACCTCCCCGGGCCCCAGCTTTTCCTTCTCACAGGGCTTGTC
GTGTGTTGGGAATTGTGCTCCTCCTGTGCAACATGCATGACCTTCATTCG
GTACACCAGATGTCAGTGATTCGCATCAGCCCGGTGTGATTTCGTCGAGA
CGAACCCATGCGACAAGCATTTTCCCACGGTCTGTGCCTAATCTAACCAC
CAATCTCGTGCCTTGCCCCGATTTGAGCAGACCGGGTCGCTAGTGTTCTG
CCGGGTGGCGGCGGTGAACAAAGACATGGAAACGGAGCTCACGTGTACCT
GTGAGTTTCTGCTTGTGCCACCCGTGTCGGAGGTTTGCAGCTCGAGATGG
TGCATGATGCTTACGTCGGATGGGGAATTTGGTCGGTGCTTGCCGTACTA
AAATAGTGTTGTGAAGTAGAGCGTATCCGAAGGGTTCCGGGGTGGTTTAC
GTACTGGTGCATACCCAGGGTACTGTGGTTTCGCTGCCTTAAACACTGCT
GAACAGGTAAAATTATTGCGCCGTCCATCTTCCCGTCCATCTTGCCGTGA
GTTTCGAACAGCGACACGAATCTAAACTCGTTTTGGCTGAAGCATGGTTT
GGTTCGTCTTTTTTCGTCACCGGTGCGCGTGTTGACCAGCTTCCTGCCCC
CATCTTCCGCTCGCTGCTTCACCCTTGATTCGCTTTCGGTGTCCCTTCCC
GCGCTGGTTCTTGTTTAGCAACACATCACGGCTCCAAGAAGGACTGGATG
ACGGGACAGTCGACGTTCGGAGAGCTTCGCGGCGGCAAGATGGAGCGGTG
TTCCCTCCTCCTTTCCAAGAGCCTCACCAAGCCCGACTGCAG GTACCGTG
TTGGCACCACGCGTTCTTTGGAGGCGACGCGTGGTTCGGCAGTTTCTAAA
GTGAAACACGCCACCTTACCGATAAAAAATGTTTACGGAAAACCAATCAA
GCAACCCCAGCTGGGGGACGGTCGGAAAGTTTGCGGTTGTGTGTGTTCAT
TTTTGCTCTCGATTTTTCAATCGTGCTGGAAAGTGTGTATTTTGTTATGT
TTCTGAGGCAGAATATGGGTACTGACTTTCAACATGGACGGGTTTTTCCG
GTGTTCTTGCTTGGCTCCCGTACCCTGTAGATTCCAAACCCGTAGCATAG
CAACGTTTCACGGTGTTCCATTCTTCCACCTGCGGTTTCTTGTGCACGGC
TGCCTGCCTACCTCTGGCAGGGTGCTCAAGAGCCTCGCCAAGCACATGCC
TTTCGAGCTCGCGGCGGGACTCAACGGGACATTTTGGGTGGACTCAG GTA
AGAAGTTTATGTTCTGTAATGGTATCTAAGAAATGAGGCTGGTTCTCTCT
CGCCCATCTCGTAGACAGCAGTGTAAGCAGTAGTGTCCGAGAGTGAAGGA
ATACTTTTTTGGGGTCCTGTATTGTTCAAAACAGCGCATAGAAATCATGT
TCTTTTTGGAGTGAAGACGAATAGCCCGCAATCAGAAGCCAGGTCGTGCT
AGTAGTTGATATTCGAGACACGAATAACATGTGCGAGCTAGTCGCGCATT
TGCAAAATGCCGCGCTGCCGGTAGTCACGTTGCTTTTTCCACTCGTTGCT
CGCAGGTTCAGAGGCACACACGATCGTGATCTGCAACGCCATCCTTAACT
CGGAGGTAATGACGGATGCCCAGACGGACGCCATGGTAGATCGGTTGGCG
AAGCACATGAAGAAGGGGCTCGCGGCAATGGATACATGA CTGAGGCAGCT
TCCCTCTCTTTCTTGGGGAGGCGTGCAGCGCTTGATAAGTTTGGTTTGTG
GGTCTTATGTAGAGGGCATCGAGGAAAGGCTTGGTGATTTCCTATGCATA
TCATCGCTCATGATTCGAGGGCATCTTCCTCCGCATGTTCGAGAGCTTTG
GAGGAGGTGGAGGGTAGCTGTTGCCCCCGACGTTGCGCTCGCTTGTGTGG
GCCCGTCGACTACCGGTTCGTTTTTCTGGATCGTGGCGTTCCAGCTCGAA
TGGCATTGGTTTTTCAGCGGGACTGCTGTCCCTCTTGTCTGCTGTAGGAG
TGCCTCGTAATTGCCTAGAGTTTTTCGGTTGTTGCGTGGTCCATTTGCGC
AACAGCCCATCTCAGAATACAAAAGAGTCATTCTAACGTCGAGTTTGTCC
CTCCGTACAGCAGTTGGAAAGCATATGTTTGTTCTCAATCCCGTTGTTGA
GCAAATCCAGTTTGTACATAGCAGCTTAATTTCCTTCCGTCGCGAACAGC
GCGTGGGATGTTGTAGCAGTCGTGGTGTGCCTAACGAGGTGTCACACGCA
ATTTGAGCACAAGATTGCCGAGTTGTGTTTGCACATGTGTGTGTGTACAC
GATTCAAAGAAGAAC back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1052:30132..34496-
>mRNA_E-siliculosus-1a_F_contig1052.379.1 ID=mRNA_E-siliculosus-1a_F_contig1052.379.1|Name=mRNA_E-siliculosus-1a_F_contig1052.379.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:30132..34496- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top