mRNA_E-siliculosus-1a_F_contig1052.377.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1052.377.1 vs. uniprot
Match: A0A6H5JE89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE89_9PHAE) HSP 1 Score: 1276 bits (3302), Expect = 0.000e+0 Identity = 931/1224 (76.06%), Postives = 967/1224 (79.00%), Query Frame = 1 Query: 130 LPGDQG-AAAGPAAAPIAEPSHPGEGKGKQGDGEXDATGKEGEGCCSGEGSPGGDGHTKEEGHEEAGAGAPGSGSNRENTSEATKRALGEEHQPAVERKKKMRKKLNKCLICLEEDDGLSRRLFMTDCCHLIAHEQCFEEWKAFHSRCFACPRKTQTRRKDNRYLSNTVMSNDVDVEEDTAEERIISDGFEEGWYAGAKKQFAQTREKERAEEERQSLACVLDVLAMEAKTSDGQARDSGGTLDEGGGGASAAGPLLSTFTEAQIAQQAALLAPCDDERIARQLEEADRAQAEEFAQQAKKDXXXXXXXXXXXXXXXXXKAAADAIARTRRPRAKSKGSGGRSGXXXXXXXXXXXXXXXXXXGCGAKNRGRLPAGGCRRSGSAPLPPALAADGSGGAEMEGVEGTCTGGGGSRPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDVDGGARRYLDSTGLTSDEESIGDDETKDADYVDAEEKREGRRKRARSTPPKHGPRASSASPTTSTSSPSAXXXXXXXXXRTASSPGDGGVGGVDVRQGRGGGASVSTTENGGCRGDXXXXXXXXXXXXXXXXXXXANGG---PHVNGNGNVSTASSIGGFTPTVAVSDSAASSAAGRVASVSSRSARVAAKWSPSDLGIDPDQQVEKEEDSRDPRRSEVVRAGSGGGQSGKRKGARGSPEGGAKDANGCEFSNANGSSQRSQTPDSGPPLKQTKNAKPRQSNGSGSANGGKCGSGSARRRNEETGTKR--------------------RLEAPGFASNAIKTKATPKTGKTGKGGGAGTVGGGSHHTVSGGVSERIISGSVRKPLVTPGIPPSSDNTKITTTKRCKKGKGGEAGAVGGG-SSSRPSMSPGFASSTDNPETXLKQGXXXXXXXXXXXXXGGLAGGKGGSHSGRNRDGETGTKRLPETRSDDTGDDGSGERASRVVVHKRRPSNTDEAKIVAKQDGGXXXXXXGSDTKGEFSLLPNNRGVAGGGVEQASGPGGGSKKNGDREIDEPPNTEDSDVIRDDDPEDDICMLNISVGGRAESILSPSRAATPQVGPEVAAGVAFKPMASESTLARASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSPGARVKRGGRDELSCSDSDGAADGRRHGDQGNSGIARALPTDVEVFDLTMGDD 3726
LPG+QG A GPAAAPIAEPSH GE KGKQGDG DA S EGSP GDG KE EAGAGAP SGSNREN SE TKRA EE QPAVER+KKMRKKLNKCLICLEEDDGLSRRLF TDCCHLIAHEQCFEEWKAFHSRCFAC RKTQTRRKDNRYLSNTV+SN+ DVEED AE RIISD FE GWY GAKKQFAQ REKERAEEER+SLACVLDVLAMEAKT++ +AR SGG AGPLLS FT+ QIAQQAALLAPCDDERIAR+LEEADRAQAEEFAQQAKKDXXXXXXXXXXXXXXXXXKAAADAIARTRRPRAKSKGSGGRSG XXXXXXXXXXXXXX AKNRGRLPAGGCRRSG+A LPPALAADGSGGAEMEGVEGTCTGGGGSRPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TGDVDGGARR+LDSTGLTSDEESIGDDETKDADYVD EEKRE R KR RSTPPKHGPRASSASPTT XXXXX RTASSPG GGVG VDVRQGR AS STTEN GCRGD XXXXXXXXXXXXX P VNGNGNVSTASSIGGFTPTVA SDSA SSA GRVASVSSRS RVAAK S SDLGIDPDQ+VEKEEDSRDP RSE++R GSGGGQSG KG GSPEGG KDANGCEFS+ANGSSQRSQTPDSG PLKQTKN KPR+SNG GS NGGK S R EAP F+SNAIKTK TPK K GKGGG+GT+ GG HH VSGGVSER++SGS+RKPLVTP +PPSSDNTKIT+TKRCK GKGGEAG VGGG SSSRPSM+PGFAS TD PET KQG XXXX GGK T SDDT GSGERA+RVVVHK+RPSNTDEAKI+ KQDGG GSDTK + SLLPNNRGVAGGG +QASGPGGGS KNGDREIDEPPNTEDSDVIRD DPE+DICMLNISVGGRAE IL P+RAAT +VGPEVAAGVAF PMASESTLA ASKAAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SPGARVKRGGRD+LSCSDSDGA R GD+GNS IARALP DVEVFDLTM DD
Sbjct: 45 LPGEQGPTAVGPAAAPIAEPSHLGEEKGKQGDGAGDAXXXXXXXXGSREGSPDGDGRQKE--WHEAGAGAPESGSNRENASEVTKRAPDEERQPAVERQKKMRKKLNKCLICLEEDDGLSRRLFQTDCCHLIAHEQCFEEWKAFHSRCFACARKTQTRRKDNRYLSNTVISNEADVEEDIAEARIISDSFE-GWYVGAKKQFAQIREKERAEEERKSLACVLDVLAMEAKTNNEEARVSGGAXXXXXXXXXXAGPLLSAFTKEQIAQQAALLAPCDDERIARELEEADRAQAEEFAQQAKKDXXXXXXXXXXXXXXXXXKAAADAIARTRRPRAKSKGSGGRSGHGARXXXXXXXXXXXXXXXXXAKNRGRLPAGGCRRSGAASLPPALAADGSGGAEMEGVEGTCTGGGGSRPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENRETGDVDGGARRFLDSTGLTSDEESIGDDETKDADYVDPEEKREVRSKRVRSTPPKHGPRASSASPTTXXXXXXXXXXXXNPIVRTASSPGVGGVGSVDVRQGRXXXASASTTENDGCRGDDDSILGXXXXXXXXXXXXXXXXXXXXPLVNGNGNVSTASSIGGFTPTVAFSDSAVSSAPGRVASVSSRSQRVAAKSSHSDLGIDPDQKVEKEEDSRDPGRSEIIRVGSGGGQSGNGKGXXGSPEGGVKDANGCEFSSANGSSQRSQTPDSGSPLKQTKNTKPRESNGGGSTNGGKGDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPEAPVFSSNAIKTKTTPKPDKAGKGGGSGTIDGGGHHAVSGGVSERVVSGSIRKPLVTPRLPPSSDNTKITSTKRCKTGKGGEAGTVGGGGSSSRPSMTPGFASCTDGPETTRKQGKSVKGGEVGXXXXXSHGGGKXXXXXXXXXXXXXXXXXXXXTHSDDTSSGGSGERANRVVVHKQRPSNTDEAKIITKQDGGSGVNGSGSDTKDDVSLLPNNRGVAGGGEKQASGPGGGSTKNGDREIDEPPNTEDSDVIRDGDPEEDICMLNISVGGRAEGILPPNRAATLKVGPEVAAGVAFNPMASESTLALASKAATTTAVKTASPRRHVMGGKMPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPGARVKRGGRDDLSCSDSDGAVGERHQGDKGNSDIARALPADVEVFDLTMSDD 1265
BLAST of mRNA_E-siliculosus-1a_F_contig1052.377.1 vs. uniprot
Match: D8LG43_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG43_ECTSI) HSP 1 Score: 1225 bits (3169), Expect = 0.000e+0 Identity = 943/1234 (76.42%), Postives = 972/1234 (78.77%), Query Frame = 1 Query: 139 DQGAAAGPAAAPIAEPSHPGEGKGKQGDGEXDATGKEGEGCCSGEGSPGGDGHTKEEGHEEAGAGAPGSGSNRENTSEATKRALGEEHQPAVERKKKMRKKLNKCLICLEEDDGLSRRLFMTDCCHLIAHEQCFEEWKAFHSRCFACPRKTQTRRKDNRYLSNTVMSNDVDVEEDTAEERIISDGFEEGWYAGAKKQFAQTREKERAEEERQSLACVLDVLAMEAKTSDGQARDSGGTLDEGGGGASAAGPLLSTFTEAQIAQQAALLAPCDDERIARQLEEADRAQAEEFAQQAKKDXXXXXXXXXXXXXXXXXKAAADAIARTRRPRAKSKGSGGRSGXXXXXXXXXXXXXXXXXXGCGAKNRGRLPAGGCRRSGSAPLPPALAADGSGGAEMEGVEGTCTGGGGSRPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDVDGGARRYLDSTGLTSDEESIGDDETKDADYVDAEEKREGRRKRARSTPPKHGPRASSASPTTSTSSPSAXXXXXXXXXRTASSPGDGGVGGVDVRQGRGGGASVSTTENGGCRGDXXXXXXXXXXXXXXXXXXXANGG---PHVNGNGNVSTASSIGGFTPTVAVSDSAASSAAGRVASVSSRSARVAAKWSPSDLGIDPDQQVEKEEDSRDPRRSEVVRAGSGGGQSGKRKGARGSPEGGAKDANGCEFSNANGSSQRSQTPDSGPPLKQTKNAKPRQSNGSGSANGGK---------------------------CGSGSARRRNEETGTKRRLEAPGFASNAIKTKATPKTGKTGKGGGAGTVGGGSHHTVSGGVSERIISGSVRKPLVTPGIPPSSDNTKITTTKRCKKGKGGEAGAVGGGSSSRPSMSPGFASSTDNPETXLKQGXXXXXXXXXXXXXGGLAGGKGGSHSGRNRDGETGTKRLPETRSDDTGDDGSGERASRVVVHKRRPSNTDEAKIVAKQDGGXXXXXXGSDTKGEFSLLPNNRGVAGGGVEQASGPGGGSKKNGDREIDEPPNTEDSDVIRDDDPEDDICMLNISVGGRAESILSPSRAATPQVGPEVAAGVAFKPMASESTLARASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGG--------SPGARVKRGGRDELSCSDSDGAADGRRHGDQGNSGIARALPTDVEVFDLTMGDD 3726
+QGAA PAAAPIA+ SHPG X H KEEGHEEAGAGA GSGSNREN SE TKRALGEEHQPAV+R+KK +KKLN CLIC EEDDGLSRRLFMTDCCHLIAHEQCF+EWK SRCFACPRKTQTRRKDNRYL NTV+SNDVDVEEDTAEERI+SD F E WY AK +FAQ REKERAEEERQSLACVLDVLAMEAKT++G+AR SGGT DEG SA GPLLS FT+AQIAQQAALLAPCDDERIAR+LEEADRAQAEEF+QQAKKDXXXXXXXXXXXXXXXX KAAADAIARTRRPRAKSKGSGGRSG XXXXXXXXXXXXXX RRSGSA LPPALAADG GGAEMEGVEGTCTGGGGSRPSGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDVDGGARRYLDSTGLTSDEESIGDDET DADYVDAEEKRE RRKR RSTPPKHGPRASSASP+TST A R ASSPGDGGVGGVDVRQGRGGGAS STTEN GCRGD XXXXXXXXXXXXXXXXXX P VNGNGNVSTASSIGGFTPTVAVSDSA SSAAGRVASV VAAK S DLGIDPDQ+VEKEEDSRDP RSEV+RAGSGGGQSGKRKGA GSPEGG D NGCEFSNANGSSQRSQTPDSG LKQTKN KPRQSNG GSANGGK A RRNEETGTKRR +APGFASNAIKTK TPK GKTGKGGG+G +GGGSHH VS VSE I+SGSVRKPLVTPGIPPSSDNTKITTTKRCK GKGGEAG VGGGSSSRPSMSPGFAS NP+T LKQG XXXXXX AGGK TRSDDTG GSGERA+RVVVHK+RPSNTDEAKI+ KQDG XXXXXX GDREIDEPPNTEDSDVIRDDDPEDDIC+LNISV GRAESILSP+RAATPQVGPEVAAGVAFKPMASESTL RASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G SPGARVKRGGR ELSCSDSDGAADGRR GDQGNS IARALP DVEVFDLT+GDD
Sbjct: 47 EQGAAXXPAAAPIAKTSHPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKKEEGHEEAGAGALGSGSNRENASETTKRALGEEHQPAVKRQKKTQKKLNTCLICREEDDGLSRRLFMTDCCHLIAHEQCFQEWKTHSSRCFACPRKTQTRRKDNRYLRNTVISNDVDVEEDTAEERIVSDNFGEEWYMRAKNEFAQNREKERAEEERQSLACVLDVLAMEAKTNNGEARASGGTQDEGXXXXSAGGPLLSAFTKAQIAQQAALLAPCDDERIARELEEADRAQAEEFSQQAKKDXXXXXXXXXXXXXXXXEKAAADAIARTRRPRAKSKGSGGRSGHDARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRSGSASLPPALAADGFGGAEMEGVEGTCTGGGGSRPSGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGDVDGGARRYLDSTGLTSDEESIGDDETNDADYVDAEEKREVRRKRVRSTPPKHGPRASSASPSTSTXXXXARARTSNPTVRPASSPGDGGVGGVDVRQGRGGGASGSTTENDGCRGDDXXXXXXXXXXXXXXXXXXXXXXXXXPLVNGNGNVSTASSIGGFTPTVAVSDSAVSSAAGRVASVXXXXXXVAAKSSHLDLGIDPDQKVEKEEDSRDPGRSEVIRAGSGGGQSGKRKGAGGSPEGGVNDTNGCEFSNANGSSQRSQTPDSGSRLKQTKNTKPRQSNGGGSANGGKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRRNEETGTKRRPDAPGFASNAIKTKTTPKPGKTGKGGGSGAIGGGSHHAVSXXVSECIVSGSVRKPLVTPGIPPSSDNTKITTTKRCKTGKGGEAGTVGGGSSSRPSMSPGFASXXXNPDTTLKQGKSVKDGEXXXXXXXSHAGGKXXXXXXXXXXXXXXXXXXXXTRSDDTGSGGSGERANRVVVHKQRPSNTDEAKIITKQDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDREIDEPPNTEDSDVIRDDDPEDDICVLNISVDGRAESILSPNRAATPQVGPEVAAGVAFKPMASESTLVRASKAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASGAGAAATGESPGARVKRGGRGELSCSDSDGAADGRRQGDQGNSSIARALPADVEVFDLTIGDD 1280 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1052.377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1052.377.1 >prot_E-siliculosus-1a_F_contig1052.377.1 ID=prot_E-siliculosus-1a_F_contig1052.377.1|Name=mRNA_E-siliculosus-1a_F_contig1052.377.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1243bp MSGKGKGRVNVNSEDGTIQMEEEEEEEVSGFEHDRGGGGGAGLLPGDQGAback to top mRNA from alignment at E-siliculosus-1a_F_contig1052:10956..22678- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1052.377.1 ID=mRNA_E-siliculosus-1a_F_contig1052.377.1|Name=mRNA_E-siliculosus-1a_F_contig1052.377.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11723bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:10956..22678- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1052:10956..22678- >mRNA_E-siliculosus-1a_F_contig1052.377.1 ID=mRNA_E-siliculosus-1a_F_contig1052.377.1|Name=mRNA_E-siliculosus-1a_F_contig1052.377.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=7458bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1052:10956..22678- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |