prot_E-siliculosus-1a_F_contig1052.376.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1052.376.1
Unique Name	prot_E-siliculosus-1a_F_contig1052.376.1
Type	polypeptide
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length	342

Homology

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BLAST of mRNA_E-siliculosus-1a_F_contig1052.376.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.520e-39
Identity = 224/281 (79.72%), Postives = 229/281 (81.49%), Query Frame = 0

Query:    7 MRLLGGPKLQRERSNVSTWDWSESGWDEEAKSG-DEXXXXXXXXXXXXXXXXGRRMSRTRPLPQAMNPHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQSPLTLSVGVGVSGAPRVLQSPRRLLCGRRSXXXXXXXXXXXXXXXXXXXXXXAGWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQY 286
            MRLLGGPKLQR++S+ STWDWSE+GWDEEA SG +E       XXXXXXXX GRRMSRTRPL QAMNPH       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXX             RQSPLTLSVGVGVSGAPRVLQSPRRLLCGRRSXXXXXXXXXXXXXXXX       GWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQY
Sbjct:    1 MRLLGGPKLQRDQSHASTWDWSENGWDEEANSGYEEESRTLPQXXXXXXXXQGRRMSRTRPLSQAMNPHREELLMPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSNGXXXXXXXXXXXXXXXXXXWASSETLCGXXXXXXXXXXXXXXXXXXXXXXXSNMSSQAEGQQ--RQSPLTLSVGVGVSGAPRVLQSPRRLLCGRRSXXXXXXXXXXXXXXXX------GGWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQY 273

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BLAST of mRNA_E-siliculosus-1a_F_contig1052.376.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 9.420e-9
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0

Query:  256 MREMRGFLLWMAVILAHMVQVPMLWFVFWQ 285
            MREMRGFLLWMAVILAHMVQVPMLWFVFWQ
Sbjct:    1 MREMRGFLLWMAVILAHMVQVPMLWFVFWQ 30

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1052.376.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1052.376.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5J947_9PHAE	1.520e-39	79.72	PAP2_C domain-containing protein n=1 Tax=Ectocarpu...	[more]
D8LG44_ECTSI	9.420e-9	100.00	PAP2_C domain-containing protein n=1 Tax=Ectocarpu...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..182
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 285..341
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 262..284
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..261
None	No IPR available	TMHMM	TMhelix		coord: 262..284

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1052	contig	E-siliculosus-1a_F_contig1052:708..7096 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1052.376.1	mRNA_E-siliculosus-1a_F_contig1052.376.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	mRNA	E-siliculosus-1a_F_contig1052 708..7096 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1052.376.1 ID=prot_E-siliculosus-1a_F_contig1052.376.1|Name=mRNA_E-siliculosus-1a_F_contig1052.376.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=342bp
MGTDVEMRLLGGPKLQRERSNVSTWDWSESGWDEEAKSGDEEESRTLTQQ
QQKQQQQGRRMSRTRPLPQAMNPHHEELLMPEEQQWRQQHHRQRTRQDDE
EQGDNDPPPVKGSSSSGGGGGSSSGSNNNNLSNGGGSGNGSGSSSSSRRW
RRWASSEALCGCNNEESRARKKRQQLLQLQQQRRSTNSSQAEEQQRQSPL
TLSVGVGVSGAPRVLQSPRRLLCGRRSSNHNNNSGVGGGGGGGGGGSAAA
GWRGTMREMRGFLLWMAVILAHMVQVPMLWFVFWQYTYLFFLEMAWCGPE
DFGTLELLQLYSIQHRENGEAVSSQSWGWCTGTFFQTQVVA*