mRNA_E-siliculosus-1a_F_contig10506.368.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10506.368.1
Unique NamemRNA_E-siliculosus-1a_F_contig10506.368.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.960e-57
Identity = 102/128 (79.69%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 384
            QAIWIVSELCPRGSLRQVLDDRGT LTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDR+                        PKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV
Sbjct: 1146 QAIWIVSELCPRGSLRQVLDDRGTSLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRDGQLQ--------------------PKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 1253          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A835Z8B5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B5_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.710e-46
Identity = 81/128 (63.28%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    4 AIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTG-VRSMTHGVGTTCWLAPEV 384
            AIWIVSELC RGSLRQVLDDR   LTP  RLR+AVDVAEGMLYLH+R++P+IHRDLKSHN+F+ E                         ++PKIGDWGSARA+AL+TG +R+MTHGVGT CWLAPEV
Sbjct:   97 AIWIVSELCSRGSLRQVLDDRSQQLTPVQRLRIAVDVAEGMLYLHTRDQPIIHRDLKSHNVFIQETATGE--------------------LLPKIGDWGSARAVALHTGGMRTMTHGVGTACWLAPEV 204          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A836CLH3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.470e-43
Identity = 80/129 (62.02%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTG-VRSMTHGVGTTCWLAPEV 384
            QAIWIVSELC RGSLRQVLDDR   L    RLR+AVD+AEGMLYLHSRE+P+IHRDLKSHN+F+ E                         ++PKIGDWGSARA+ L+TG +R+MTHGVGT CWLAPEV
Sbjct:   96 QAIWIVSELCSRGSLRQVLDDRSQHLPLVMRLRIAVDIAEGMLYLHSREQPIIHRDLKSHNVFIQETATGE--------------------LLPKIGDWGSARAVMLHTGGMRTMTHGVGTACWLAPEV 204          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A7S3XPL6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL6_HETAK)

HSP 1 Score: 147 bits (371), Expect = 3.090e-40
Identity = 78/128 (60.94%), Postives = 94/128 (73.44%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 384
            Q++WIVSELC RGSLRQVL+DR T L+ R RL++A+DVAEGMLYLH+ E P++HRDLKSHNIF+ E             +S  EL A       KIGDWGSARA+AL +G R+MTHGVGT CW+APEV
Sbjct:  195 QSLWIVSELCSRGSLRQVLNDRRTRLSTRRRLQLAIDVAEGMLYLHNHEAPIVHRDLKSHNIFIHE-------------KSPHELEA-------KIGDWGSARAVAL-SGQRTMTHGVGTACWIAPEV 301          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A7S0CKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKJ9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.050e-39
Identity = 72/132 (54.55%), Postives = 94/132 (71.21%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSA----FFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 384
            QAIWIVSELC  GSLRQ+LDD+   L+ R RLR+A+ VAEGM+Y+H+++ P++HRDLKSHNIF+ E    S D++      +  +     + ++ +V KIGDWGSARA     G R+MTHGVGT CWLAPEV
Sbjct:   24 QAIWIVSELCSLGSLRQLLDDKEKDLSIRLRLRLALHVAEGMMYMHTQDPPILHRDLKSHNIFVHETSSGSTDTSEKAGLMMDGNSYSENSCERHIVAKIGDWGSARAAL--AGSRTMTHGVGTACWLAPEV 153          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: F0YIL7_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL7_AURAN)

HSP 1 Score: 135 bits (340), Expect = 9.930e-37
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGV-RSMTHGVGTTCWLAPEV 384
            QAIWIVSELC  GSLR VLDD    L    RLR+A+DVAEGMLYLH+R+ P++HRDLKSHN+F+ E R                       +  +IGDWGSARA+A+     R+MTHGVGTTCWLAPE+
Sbjct:   78 QAIWIVSELCSHGSLRSVLDDASLELGLETRLRMAIDVAEGMLYLHTRDHPIVHRDLKSHNLFVAEVRGR---------------------MHVRIGDWGSARAVAMSPDFSRTMTHGVGTTCWLAPEL 185          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A7S2RPC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPC6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.180e-35
Identity = 73/134 (54.48%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALAL--YTGVRSMTHGVGTTCWLAPEVREEG 396
            QAIW+VSELC  GSLRQVLDD+   L    R+++A+DVAEGMLYLHSR+ P+IHRD+KSHN+F+ E                   P+ +  V  KIGDWGSARA+AL      ++MTHGVGT CWLAPEV + G
Sbjct:  293 QAIWLVSELCSLGSLRQVLDDKHRELPISTRIQMAIDVAEGMLYLHSRDPPIIHRDIKSHNLFVQES------------------PSGEYCV--KIGDWGSARAVALAGQQNPKTMTHGVGTVCWLAPEVIKHG 406          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A1Z5K8N3_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K8N3_FISSO)

HSP 1 Score: 139 bits (349), Expect = 1.720e-35
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMME---DRE--SSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 384
            QAIWIVSELC +GSLRQ+LDD    L+   RL++A+ VAEGM YLH++E P+IHRDLKSHNIF+ E   D E  S+  S   +     E    Q VV+ KIGDWGSARA    +G R+MTHGVGT CWLAPEV
Sbjct:  846 QAIWIVSELCSQGSLRQLLDDNERVLSVDLRLQLALQVAEGMTYLHNQEPPIIHRDLKSHNIFVHETFTDAEDGSTTSSKPRISGQHYEKLETQSVVIAKIGDWGSARAAL--SGSRTMTHGVGTACWLAPEV 976          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: A0A1Z5JH37_FISSO (Protein kinase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH37_FISSO)

HSP 1 Score: 138 bits (348), Expect = 2.430e-35
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 1
Query:    1 QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFM------MEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWGSARALALYTGVRSMTHGVGTTCWLAPEV 384
            QAIWIVSELC +GSLRQ+LDD    L+   RL++A+ VAEGM YLH++E P+IHRDLKSHNIF+      +ED  ++        +   +L   Q VV+ KIGDWGSARA    +G R+MTHGVGT CWLAPEV
Sbjct:  627 QAIWIVSELCSQGSLRQLLDDNERVLSVDLRLQLALQVAEGMTYLHNQEPPIIHRDLKSHNIFVHETFTDVEDGSTTSSKPRISGQHYEKLET-QSVVIAKIGDWGSARAAL--SGSRTMTHGVGTACWLAPEV 757          
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 8.000e-35
Identity = 67/72 (93.06%), Postives = 68/72 (94.44%), Query Frame = 1
Query:    4 AIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRESSFD 219
            AIWIVSELCPRGSLRQVLDDRGTPLTP ARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDR+   D
Sbjct:  521 AIWIVSELCPRGSLRQVLDDRGTPLTPWARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMEDRDEKAD 592          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10506.368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8D6_9PHAE4.960e-5779.69Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z8B5_9STRA1.710e-4663.28Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CLH3_9STRA1.470e-4362.02Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XPL6_HETAK3.090e-4060.94Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0CKJ9_9STRA2.050e-3954.55Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
F0YIL7_AURAN9.930e-3755.04Protein kinase domain-containing protein (Fragment... [more]
A0A7S2RPC6_9STRA1.180e-3554.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5K8N3_FISSO1.720e-3558.65Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A1Z5JH37_FISSO2.430e-3555.97Protein kinase domain-containing protein n=1 Tax=F... [more]
D7FTR3_ECTSI8.000e-3593.06Similar to Serine/threonine-protein kinase CTR1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10506contigE-siliculosus-1a_F_contig10506:900..1955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size399
Model size399
Exons3
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.KLT
EggNOG OGsCOG0515@1,KOG0192@2759
EggNOG free text desc.protein kinase activity
Seed eggNOG ortholog2880.D7FTR3
Seed ortholog evalue7.7e-30
Seed ortholog score136.7
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10506.368.1prot_E-siliculosus-1a_F_contig10506.368.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10506 900..1955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927553.0844886-CDS-E-siliculosus-1a_F_contig10506:899..11051622927553.0844886-CDS-E-siliculosus-1a_F_contig10506:899..1105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 900..1105 +
1696318582.4094238-CDS-E-siliculosus-1a_F_contig10506:899..11051696318582.4094238-CDS-E-siliculosus-1a_F_contig10506:899..1105Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 900..1105 +
1622927553.1046014-CDS-E-siliculosus-1a_F_contig10506:1301..13741622927553.1046014-CDS-E-siliculosus-1a_F_contig10506:1301..1374Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 1302..1374 +
1696318582.4237533-CDS-E-siliculosus-1a_F_contig10506:1301..13741696318582.4237533-CDS-E-siliculosus-1a_F_contig10506:1301..1374Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 1302..1374 +
1622927553.1206994-CDS-E-siliculosus-1a_F_contig10506:1835..19551622927553.1206994-CDS-E-siliculosus-1a_F_contig10506:1835..1955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 1836..1955 +
1696318582.4337819-CDS-E-siliculosus-1a_F_contig10506:1835..19551696318582.4337819-CDS-E-siliculosus-1a_F_contig10506:1835..1955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10506 1836..1955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10506.368.1

>prot_E-siliculosus-1a_F_contig10506.368.1 ID=prot_E-siliculosus-1a_F_contig10506.368.1|Name=mRNA_E-siliculosus-1a_F_contig10506.368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=133bp
QAIWIVSELCPRGSLRQVLDDRGTPLTPRARLRVAVDVAEGMLYLHSREE
PVIHRDLKSHNIFMMEDRESSFDSAFFLFRSLTELPAFQQVVVPKIGDWG
SARALALYTGVRSMTHGVGTTCWLAPEVREEG*
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mRNA from alignment at E-siliculosus-1a_F_contig10506:900..1955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10506.368.1 ID=mRNA_E-siliculosus-1a_F_contig10506.368.1|Name=mRNA_E-siliculosus-1a_F_contig10506.368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1056bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10506:900..1955+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCATCTGGATCGTGAGCGAGCTCTGCCCCCGAGGCAGCCTGAGGCA GGTGCTCGACGACAGGGGGACGCCGCTAACCCCCAGGGCTAGGCTGCGGG TGGCGGTGGACGTCGCTGAGGGGATGCTGTACCTGCACAGCCGAGAGGAG CCGGTGATCCACCGCGACCTGAAGAGCCACAACATCTTCATGATGGAGGA CCGAGAGTGAGAAACAAACAAAGAAACAAAGAAACAAAGGCAGCGTTGTT TATCGGGTTCTTGGTTTATTGGTGTACTCGGCACCCGATACTAATCTACG GGGAGCAGTCTTCAGGTTTATGATGCGGCGGCGCCCCCCAGGGGGTGCTG TATCCTGCTGTGTGACTCGTTGCTCAATACATACGGTATGGTCTTGAGTC AGGTCTTCATTTGACTCAGCCTTCTTTCTCTTTCGCTCTCTGACGGAGCT GCCAGCGTTCCAACAGGTTGTGGTTGTGTTGTGACGGTGACGGTGGAGTG TTGTCTCCGCGTTGTTTCGATGCGGTACCTAGCGTGGTAGCGTGGTGGTG GTGCTGAGACGAACACTGACACTAACACTGACACTAACAACGCTGATCGA CCCCCATGTTTGATTCACGTAGGCTATGGCAGACTCGTTCGATACGTATT CTATGCTCAGGGGCAAACCACGTATGGGGCAGGGTATCGTGCAGCCTTAC CTCGCAACTTTTCGGCTTTTTCCGGCCTGTCCGTGCTGATACCATGGCAT GTCATGTCTTGCAAACCAACCTTTTGCGCACACACCTCGCCTCTCTCCTC TCGCGAACTTTTGTACGCACATCTATCATACCCCCCCTCGTTTCACTTCT AGTTTCGCATTGCACACACACACCCTCCGTACCTCTCTCTCTCTCCCGAA CGTTTGCGATCTCTCTACTGCAGCGGGCAGCTCCAGCCCAAGATCGGCGA CTGGGGGTCCGCTCGGGCCTTGGCGCTCTATACCGGGGTGCGCAGCATGA CCCACGGGGTCGGGACGACGTGCTGGCTGGCGCCGGAGGTAAGAGAAGAA GGCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10506:900..1955+

>mRNA_E-siliculosus-1a_F_contig10506.368.1 ID=mRNA_E-siliculosus-1a_F_contig10506.368.1|Name=mRNA_E-siliculosus-1a_F_contig10506.368.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=798bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10506:900..1955+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGGCCATCTGGATCGTGAGCGAGCTCTGCCCCCGAGGCAGCCTGAGGCA
GGTGCTCGACGACAGGGGGACGCCGCTAACCCCCAGGGCTAGGCTGCGGG
TGGCGGTGGACGTCGCTGAGGGGATGCTGTACCTGCACAGCCGAGAGGAG
CCGGTGATCCACCGCGACCTGAAGAGCCACAACATCTTCATGATGGAGGA
CCGAGACAGGCCATCTGGATCGTGAGCGAGCTCTGCCCCCGAGGCAGCCT
GAGGCAGGTGCTCGACGACAGGGGGACGCCGCTAACCCCCAGGGCTAGGC
TGCGGGTGGCGGTGGACGTCGCTGAGGGGATGCTGTACCTGCACAGCCGA
GAGGAGCCGGTGATCCACCGCGACCTGAAGAGCCACAACATCTTCATGAT
GGAGGACCGAGAGTCTTCATTTGACTCAGCCTTCTTTCTCTTTCGCTCTC
TGACGGAGCTGCCAGCGTTCCAACAGGTTGTGGTTGTCTTCATTTGACTC
AGCCTTCTTTCTCTTTCGCTCTCTGACGGAGCTGCCAGCGTTCCAACAGG
TTGTGGTTCCCAAGATCGGCGACTGGGGGTCCGCTCGGGCCTTGGCGCTC
TATACCGGGGTGCGCAGCATGACCCACGGGGTCGGGACGACGTGCTGGCT
GGCGCCGGAGGTAAGAGAAGAAGGCTGACCCAAGATCGGCGACTGGGGGT
CCGCTCGGGCCTTGGCGCTCTATACCGGGGTGCGCAGCATGACCCACGGG
GTCGGGACGACGTGCTGGCTGGCGCCGGAGGTAAGAGAAGAAGGCTGA
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