mRNA_E-siliculosus-1a_F_contig10500.366.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10500.366.1
Unique NamemRNA_E-siliculosus-1a_F_contig10500.366.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10500.366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10500contigE-siliculosus-1a_F_contig10500:1917..2081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size165
Model size165
Exons1
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927552.9778993-CDS-E-siliculosus-1a_F_contig10500:1916..20811622927552.9778993-CDS-E-siliculosus-1a_F_contig10500:1916..2081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10500 1917..2081 -
1696318582.377714-CDS-E-siliculosus-1a_F_contig10500:1916..20811696318582.377714-CDS-E-siliculosus-1a_F_contig10500:1916..2081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10500 1917..2081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10500.366.1prot_E-siliculosus-1a_F_contig10500.366.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10500 1917..2081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10500.366.1

>prot_E-siliculosus-1a_F_contig10500.366.1 ID=prot_E-siliculosus-1a_F_contig10500.366.1|Name=mRNA_E-siliculosus-1a_F_contig10500.366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=55bp
QVGALHNCVHFLAPQCRYKEAEGLYERAAAIIEVALGPEHPNFAAIRKNW
LLLLE
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mRNA from alignment at E-siliculosus-1a_F_contig10500:1917..2081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10500.366.1 ID=mRNA_E-siliculosus-1a_F_contig10500.366.1|Name=mRNA_E-siliculosus-1a_F_contig10500.366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10500:1917..2081- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGTTGGCGCCTTGCACAATTGTGTTCACTTCCTCGCCCCGCAGTGCCG
CTACAAGGAAGCCGAAGGTCTATACGAGCGTGCGGCTGCGATTATTGAGG
TGGCGCTGGGGCCGGAACATCCCAACTTCGCCGCAATTCGCAAAAACTGG
TTACTCCTTTTGGAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10500:1917..2081-

>mRNA_E-siliculosus-1a_F_contig10500.366.1 ID=mRNA_E-siliculosus-1a_F_contig10500.366.1|Name=mRNA_E-siliculosus-1a_F_contig10500.366.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10500:1917..2081- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAAGTTGGCGCCTTGCACAATTGTGTTCACTTCCTCGCCCCGCAGTGCCG
CTACAAGGAAGCCGAAGGTCTATACGAGCGTGCGGCTGCGATTATTGAGG
TGGCGCTGGGGCCGGAACATCCCAACTTCGCCGCAATTCGCAAAAACTGG
TTACTCCTTTTGGAACAAGTTGGCGCCTTGCACAATTGTGTTCACTTCCT
CGCCCCGCAGTGCCGCTACAAGGAAGCCGAAGGTCTATACGAGCGTGCGG
CTGCGATTATTGAGGTGGCGCTGGGGCCGGAACATCCCAACTTCGCCGCA
ATTCGCAAAAACTGGTTACTCCTTTTGGAA
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