mRNA_E-siliculosus-1a_M_contig991.17798.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig991.17798.1
Unique NamemRNA_E-siliculosus-1a_M_contig991.17798.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 2.320e-57
Identity = 144/185 (77.84%), Postives = 147/185 (79.46%), Query Frame = 1 
Query:    1 AQGGTARPLVKQRIATLQDVLDESDGGSSAAPLRVEEEDSADGALQGRGSKGKQPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQNKKTKWKWDRWVVPCSIQHLQQALGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
            A GGTARPLVKQRIATLQDVLDE DGGSSAAPLR E  D AD +LQGR  KGK+PARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VQQNK                          GKEFSCGKGYQYEQWYSRVA +VKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD
Sbjct:  212 AHGGTARPLVKQRIATLQDVLDEPDGGSSAAPLRAEVGDFADASLQGRSGKGKRPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVQQNK--------------------------GKEFSCGKGYQYEQWYSRVAQYVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 370
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: D7G1M7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M7_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 2.940e-29
Identity = 76/146 (52.05%), Postives = 83/146 (56.85%), Query Frame = 1 
Query:  115 DSADGALQGRGSKGKQPARAPRMEDETAGQDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVQQNKKTKWKWDRWVVPCSIQHLQQALGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLR 552
            DSAD ALQG   KGKQPARAPRME+ETAGQD                                   ++     RW    S +    A  +     F CGKGY YEQWYSRVAHHVKIELAKNK YM+THGSLLEERFGRAEM+HLR
Sbjct:   44 DSADAALQG--GKGKQPARAPRMENETAGQDTLKRNRVE-----------------------SSRTRSPGNMTRWSRRSSYRLSSSAWATG----FICGKGYGYEQWYSRVAHHVKIELAKNKGYMKTHGSLLEERFGRAEMQHLR 160
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: D7FH42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH42_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.070e-24
Identity = 54/79 (68.35%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:  322 WKWDRWVVPCSIQHLQQALGSS-RGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
            WK++       +Q + + LG    GKEFSCGKGY +EQWYSRVAH+VKIELAKNK YMQTHGSLLEERF RAEM+HLRD
Sbjct:   66 WKYETVEKEVILQVVLERLGDRIYGKEFSCGKGYGHEQWYSRVAHYVKIELAKNKVYMQTHGSLLEERFARAEMQHLRD 144
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Match: A0A6H5K6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.050e-18
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:  376 LGSSRGKEFSCGKGYQYEQWYSRVAHHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD 555
            +   +GK+FSCGKGY +EQ YSRV HHVKI+LAKN   MQTHGSLL ERFGRA MKHLRD
Sbjct:    1 MEDGQGKKFSCGKGYGHEQRYSRVVHHVKIQLAKNNTSMQTHGSLLNERFGRAGMKHLRD 60
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig991.17798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KRU9_9PHAE2.320e-5777.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1M7_ECTSI2.940e-2952.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH42_ECTSI4.070e-2468.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6J2_9PHAE1.050e-1873.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig991contigE-siliculosus-1a_M_contig991:759..2653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size555
Model size555
Exons3
Ec32 orthologEc-05_005650.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig991.17798.1prot_E-siliculosus-1a_M_contig991.17798.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig991 759..2653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.671967-CDS-E-siliculosus-1a_M_contig991:758..10701622936583.671967-CDS-E-siliculosus-1a_M_contig991:758..1070Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 759..1070 +
1696251142.7514765-CDS-E-siliculosus-1a_M_contig991:758..10701696251142.7514765-CDS-E-siliculosus-1a_M_contig991:758..1070Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 759..1070 +
1622936583.6900127-CDS-E-siliculosus-1a_M_contig991:2099..21771622936583.6900127-CDS-E-siliculosus-1a_M_contig991:2099..2177Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 2100..2177 +
1696251142.7612221-CDS-E-siliculosus-1a_M_contig991:2099..21771696251142.7612221-CDS-E-siliculosus-1a_M_contig991:2099..2177Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 2100..2177 +
1622936583.7124586-CDS-E-siliculosus-1a_M_contig991:2488..26531622936583.7124586-CDS-E-siliculosus-1a_M_contig991:2488..2653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 2489..2653 +
1696251142.770518-CDS-E-siliculosus-1a_M_contig991:2488..26531696251142.770518-CDS-E-siliculosus-1a_M_contig991:2488..2653Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 2489..2653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig991.17798.1

>prot_E-siliculosus-1a_M_contig991.17798.1 ID=prot_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=185bp
AQGGTARPLVKQRIATLQDVLDESDGGSSAAPLRVEEEDSADGALQGRGS
KGKQPARAPRMEDETAGQDEEEEEDEEEAEEDDDAGGREEGDSEEDEGGV
QQNKKTKWKWDRWVVPCSIQHLQQALGSSRGKEFSCGKGYQYEQWYSRVA
HHVKIELAKNKAYMQTHGSLLEERFGRAEMKHLRD
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mRNA from alignment at E-siliculosus-1a_M_contig991:759..2653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig991.17798.1 ID=mRNA_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=1895bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:759..2653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCCAGGGGGGGACCGCCCGTCCGTTAGTCAAGCAGAGAATCGCCACCCT
CCAAGATGTCCTAGACGAGTCGGATGGAGGTTCCTCCGCGGCACCCTTGC
GTGTGGAGGAAGAGGACTCCGCGGATGGAGCGCTCCAGGGTAGGGGCAGC
AAGGGCAAGCAACCCGCGCGCGCCCCGCGCATGGAGGACGAGACTGCCGG
CCAAGACGAGGAGGAGGAAGAAGACGAGGAGGAAGCTGAGGAAGACGATG
ACGCGGGTGGCCGTGAAGAGGGAGACTCCGAAGAGGACGAGGGTGGAGTC
CAGCAGAACAAGGTGAGAATACATTGTATCGTATGTAGGTGGTCTGTGCG
GCGATAATTTAAGCGGTGTTTAAAATTTGAAGCTttgacttgTATTACAT
TTGAAACAAATGTGTCCTGTACTCTGTACCAAGTACCAAACACATGCCTG
TGAAACTACTTGCGTTGATACTGTCCTGAACGACACATTGTATCACCTCC
GGTCTGGTGGTATCCTACACCCGATATTTTGATTGCTGTATTGGCTATGT
TCTTAAGAACGGGTTTGTGAGTACTCTTTTGAGTTTCAAGGGTTGCCGTA
AGGATTAGTTGACCGGGTGCCATCGACGATGATTCCTTTTTTTCTTGCCT
TGCTTCTCGCTCCACGATACCGTCTCTCCGACCTGAGCGACTCCCGATGA
AATAGACTCAGACGTATCCCCTGGGGCTAACGCCATCTCAGAAGACGTTC
CCGGAACGGTCTTACGCAATGTTGCGGCTATTAGGTACATTTTACATTCG
TCCCTGATCTACTGTACTATACTAGGCAAAATGCAGCAACGGACATTCTC
ACGCGGTATGTTCGTTAGCGGTTGAGACCCAGGAGTTTGGCTAGGGTTAG
GCCCTTACCACATGGGTGCAAGGGTTGGCCGGGTATGGGTACCAGCTCAT
TGAATGCCCTGTGCCCACTTGCAAGAACCCCAGTCGCGGACCCCGGTGAC
TCATCGCTCTCGGTGCACGCTTTGCGGGCTCAGTGCAACGATAGAGTTTG
ATCGTGTCTTTGAGCGCAACCTGATGCCACGTCTACGACCCCGCCTTCCT
TTCATCTTTCTGTACGTTAGAAAACGTCCCTGTTTACCTTTAGTACGTTC
TAATGTCTGCACTGATCCAAGATCCGCGGACGCCTTCTGTGGTGACACGT
ATTCTATACAAAAGCGCCGTAGACCGCCGCTATTCCCAGAAAATAAACGA
AAAAGGAATGGTCTAAAAAACTTCTTACCCAAACGATCGACCCCTATGAA
GAAGGTGTGAAAGCAAGAAAGGAAAAGAAAGACACTGGAAGAAAACAAAA
TGGAAGTGGGACAGGTGGGTTGTCCCGTGCTCCATACAACATCTACAACA
GGCACTGGGATCCTCGCGTGTGTGGTGGAACTGTCAGCGCAAGGAGATTA
ACGTCCGCATCGGCACAATGATTCGCGTGACTCTTAAACCGGTCGCCCCG
GTGGTCTAGTTGGTAACCTCGAAACCCTCTAGTGGTCAGGTCAGGGGTTT
GAAGCCCGGCGTAAGCGAGCTTTTCTTGCAACGTGAGTTTTCTCTCGCTT
CCGCTCCTGGCCTAGTGGATAGCGCTAGTTCGTGTGTACACAGAGGGAAG
AGAGAATCCTATGCTAACTTTTTCACTGTGTGCTCTGTTCCGCGCTGGAA
TCGCCTTGCCCGATCGTCGTATCGTCACAgGGGAAGGAGTTCAGTTGCGG
CAAGGGCTACCAATACGAACAGTGGTACTCTCGGGTCGCGCATCACGTCA
AGATCGAGCTGGCCAAGAACAAGGCTTACATGCAGACCCACGGATCTCTT
CTGGAGGAACGCTTCGGGAGGGCGGAGATGAAACACCTCAGGGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig991:759..2653+

>mRNA_E-siliculosus-1a_M_contig991.17798.1 ID=mRNA_E-siliculosus-1a_M_contig991.17798.1|Name=mRNA_E-siliculosus-1a_M_contig991.17798.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1110bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:759..2653+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GCCCAGGGGGGGACCGCCCGTCCGTTAGTCAAGCAGAGAATCGCCACCCT
CCAAGATGTCCTAGACGAGTCGGATGGAGGTTCCTCCGCGGCACCCTTGC
GTGTGGAGGAAGAGGACTCCGCGGATGGAGCGCTCCAGGGTAGGGGCAGC
AAGGGCAAGCAACCCGCGCGCGCCCCGCGCATGGAGGACGAGACTGCCGG
CCAAGACGAGGAGGAGGAAGAAGACGAGGAGGAAGCTGAGGAAGACGATG
ACGCGGGTGGCCGTGAAGAGGGAGACTCCGAAGAGGACGAGGGTGGAGTC
CAGCAGAACAAGGCCCAGGGGGGGACCGCCCGTCCGTTAGTCAAGCAGAG
AATCGCCACCCTCCAAGATGTCCTAGACGAGTCGGATGGAGGTTCCTCCG
CGGCACCCTTGCGTGTGGAGGAAGAGGACTCCGCGGATGGAGCGCTCCAG
GGTAGGGGCAGCAAGGGCAAGCAACCCGCGCGCGCCCCGCGCATGGAGGA
CGAGACTGCCGGCCAAGACGAGGAGGAGGAAGAAGACGAGGAGGAAGCTG
AGGAAGACGATGACGCGGGTGGCCGTGAAGAGGGAGACTCCGAAGAGGAC
GAGGGTGGAGTCCAGCAGAACAAGAAAACAAAATGGAAGTGGGACAGGTG
GGTTGTCCCGTGCTCCATACAACATCTACAACAGGCACTGGGATCCTCGC
GTAAAACAAAATGGAAGTGGGACAGGTGGGTTGTCCCGTGCTCCATACAA
CATCTACAACAGGCACTGGGATCCTCGCGTGGGAAGGAGTTCAGTTGCGG
CAAGGGCTACCAATACGAACAGTGGTACTCTCGGGTCGCGCATCACGTCA
AGATCGAGCTGGCCAAGAACAAGGCTTACATGCAGACCCACGGATCTCTT
CTGGAGGAACGCTTCGGGAGGGCGGAGATGAAACACCTCAGGGACGGGAA
GGAGTTCAGTTGCGGCAAGGGCTACCAATACGAACAGTGGTACTCTCGGG
TCGCGCATCACGTCAAGATCGAGCTGGCCAAGAACAAGGCTTACATGCAG
ACCCACGGATCTCTTCTGGAGGAACGCTTCGGGAGGGCGGAGATGAAACA
CCTCAGGGAC
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