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Homology
BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5KDT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 6.580e-42 Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 1 Query: 1 MVGGLRHRRAKMLQAGTRRASLQPHFWVYMRRASRKAPPCKTMMRGSPVTRDPSLLHRQHQVGCCVGHRCRRGDIVR 231
M+GGLR RAKMLQAGTRRASLQ FWV+MRRASRKAP CKTMM+ SP TRDPSLLHRQHQVGCCVGHRCRR DIVR
Sbjct: 4 MIGGLRRGRAKMLQAGTRRASLQRRFWVFMRRASRKAPSCKTMMQDSPATRDPSLLHRQHQVGCCVGHRCRRVDIVR 80
BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE) HSP 1 Score: 136 bits (343), Expect = 8.920e-36 Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 3 Query: 3 GRRTSSQKGKDAAGGDKESVAAAALLGLHAPGVEEGPAVQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL 233
GRRTS +KGKDAAGGDKESVAAA LLGLHAPGVEEGP VQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL
Sbjct: 90 GRRTSPRKGKDAAGGDKESVAAAVLLGLHAPGVEEGPFVQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL 166
BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5K7N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N6_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.280e-9 Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 3 Query: 42 GGDKESVAAAALLGLHAPGVEEGPAVQDHDAGLSGDKGSLPASPAASGRVLRGSSLP 212
GGDKESVAAAALL LHA GV+EGPAV DHDAG S + S P S R+ G LP
Sbjct: 13 GGDKESVAAAALLSLHALGVQEGPAVLDHDAGFSRFEHSPPLS-----RITTGCHLP 64
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 234 |
| Model size | 234 |
| Exons | 1 |
| Ec32 ortholog | Ec-05_005660.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | mitochondrion |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622936583.6093342-CDS-E-siliculosus-1a_M_contig991:414..648 | 1622936583.6093342-CDS-E-siliculosus-1a_M_contig991:414..648 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig991 415..648 + |
| 1696251142.7378645-CDS-E-siliculosus-1a_M_contig991:414..648 | 1696251142.7378645-CDS-E-siliculosus-1a_M_contig991:414..648 | Ectocarpus siliculosus Ec864m_EcPH12_78m male | CDS | E-siliculosus-1a_M_contig991 415..648 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig991.17797.1 >prot_E-siliculosus-1a_M_contig991.17797.1 ID=prot_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=78bp
MVGGLRHRRAKMLQAGTRRASLQPHFWVYMRRASRKAPPCKTMMRGSPVT
RDPSLLHRQHQVGCCVGHRCRRGDIVR* back to topmRNA from alignment at E-siliculosus-1a_M_contig991:415..648+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_M_contig991.17797.1 ID=mRNA_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:415..648+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAGGAGGACTTCGTCACAGAAGGGCAAAGATGCTGCAGGCGGGGAC
AAGGAGAGCGTCGCTGCAGCCGCACTTTTGGGTCTACATGCGCCGGGCGT
CGAGGAAGGCCCCGCCGTGCaAGACCATGATGCGGGGCTCTCCGGTGACA
AGGGATCCCTCCCTGCTTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGGGGATATCGTGCGCTAA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_M_contig991:415..648+ >mRNA_E-siliculosus-1a_M_contig991.17797.1 ID=mRNA_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:415..648+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAGGAGGACTTCGTCACAGAAGGGCAAAGATGCTGCAGGCGGGGAC
AAGGAGAGCGTCGCTGCAGCCGCACTTTTGGGTCTACATGCGCCGGGCGT
CGAGGAAGGCCCCGCCGTGCaAGACCATGATGCGGGGCTCTCCGGTGACA
AGGGATCCCTCCCTGCTTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGGGGATATCGTGCGCTAAATGGTAGGAGGACTTC
GTCACAGAAGGGCAAAGATGCTGCAGGCGGGGACAAGGAGAGCGTCGCTG
CAGCCGCACTTTTGGGTCTACATGCGCCGGGCGTCGAGGAAGGCCCCGCC
GTGCaAGACCATGATGCGGGGCTCTCCGGTGACAAGGGATCCCTCCCTGC
TTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGGTCATCGCTGCCGCAGG
GGGGATATCGTGCGCTAA back to top
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