mRNA_E-siliculosus-1a_M_contig991.17797.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig991.17797.1
Unique NamemRNA_E-siliculosus-1a_M_contig991.17797.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5KDT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDT8_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 6.580e-42
Identity = 66/77 (85.71%), Postives = 69/77 (89.61%), Query Frame = 1 
Query:    1 MVGGLRHRRAKMLQAGTRRASLQPHFWVYMRRASRKAPPCKTMMRGSPVTRDPSLLHRQHQVGCCVGHRCRRGDIVR 231
            M+GGLR  RAKMLQAGTRRASLQ  FWV+MRRASRKAP CKTMM+ SP TRDPSLLHRQHQVGCCVGHRCRR DIVR
Sbjct:    4 MIGGLRRGRAKMLQAGTRRASLQRRFWVFMRRASRKAPSCKTMMQDSPATRDPSLLHRQHQVGCCVGHRCRRVDIVR 80
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5KRU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRU9_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 8.920e-36
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 3 
Query:    3 GRRTSSQKGKDAAGGDKESVAAAALLGLHAPGVEEGPAVQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL 233
            GRRTS +KGKDAAGGDKESVAAA LLGLHAPGVEEGP VQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL
Sbjct:   90 GRRTSPRKGKDAAGGDKESVAAAVLLGLHAPGVEEGPFVQDHDAGLSGDKGSLPASPAASGRVLRGSSLPQGGYRAL 166
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BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Match: A0A6H5K7N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.280e-9
Identity = 36/57 (63.16%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:   42 GGDKESVAAAALLGLHAPGVEEGPAVQDHDAGLSGDKGSLPASPAASGRVLRGSSLP 212
            GGDKESVAAAALL LHA GV+EGPAV DHDAG S  + S P S     R+  G  LP
Sbjct:   13 GGDKESVAAAALLSLHALGVQEGPAVLDHDAGFSRFEHSPPLS-----RITTGCHLP 64
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig991.17797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KDT8_9PHAE6.580e-4285.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRU9_9PHAE8.920e-3694.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N6_9PHAE1.280e-963.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig991contigE-siliculosus-1a_M_contig991:415..648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size234
Model size234
Exons1
Ec32 orthologEc-05_005660.1
Ec32 ortholog descriptionHypothetical protein
Hectar predicted targeting categorymitochondrion
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936583.6093342-CDS-E-siliculosus-1a_M_contig991:414..6481622936583.6093342-CDS-E-siliculosus-1a_M_contig991:414..648Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 415..648 +
1696251142.7378645-CDS-E-siliculosus-1a_M_contig991:414..6481696251142.7378645-CDS-E-siliculosus-1a_M_contig991:414..648Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig991 415..648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig991.17797.1prot_E-siliculosus-1a_M_contig991.17797.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig991 415..648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig991.17797.1

>prot_E-siliculosus-1a_M_contig991.17797.1 ID=prot_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=78bp
MVGGLRHRRAKMLQAGTRRASLQPHFWVYMRRASRKAPPCKTMMRGSPVT
RDPSLLHRQHQVGCCVGHRCRRGDIVR*
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mRNA from alignment at E-siliculosus-1a_M_contig991:415..648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig991.17797.1 ID=mRNA_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:415..648+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAGGAGGACTTCGTCACAGAAGGGCAAAGATGCTGCAGGCGGGGAC
AAGGAGAGCGTCGCTGCAGCCGCACTTTTGGGTCTACATGCGCCGGGCGT
CGAGGAAGGCCCCGCCGTGCaAGACCATGATGCGGGGCTCTCCGGTGACA
AGGGATCCCTCCCTGCTTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGGGGATATCGTGCGCTAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig991:415..648+

>mRNA_E-siliculosus-1a_M_contig991.17797.1 ID=mRNA_E-siliculosus-1a_M_contig991.17797.1|Name=mRNA_E-siliculosus-1a_M_contig991.17797.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=468bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig991:415..648+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGGTAGGAGGACTTCGTCACAGAAGGGCAAAGATGCTGCAGGCGGGGAC
AAGGAGAGCGTCGCTGCAGCCGCACTTTTGGGTCTACATGCGCCGGGCGT
CGAGGAAGGCCCCGCCGTGCaAGACCATGATGCGGGGCTCTCCGGTGACA
AGGGATCCCTCCCTGCTTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGG
TCATCGCTGCCGCAGGGGGGATATCGTGCGCTAAATGGTAGGAGGACTTC
GTCACAGAAGGGCAAAGATGCTGCAGGCGGGGACAAGGAGAGCGTCGCTG
CAGCCGCACTTTTGGGTCTACATGCGCCGGGCGTCGAGGAAGGCCCCGCC
GTGCaAGACCATGATGCGGGGCTCTCCGGTGACAAGGGATCCCTCCCTGC
TTCACCGGCAGCATCAGGTCGGGTGTTGCGTGGGTCATCGCTGCCGCAGG
GGGGATATCGTGCGCTAA
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