mRNA_E-siliculosus-1a_F_contig105.359.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig105.359.1
Unique NamemRNA_E-siliculosus-1a_F_contig105.359.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: D8LSE6_ECTSI (NUOE homolog, NADH dehydrogenase (Ubiquinone) subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSE6_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.390e-127
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELL+KCK+GETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY
Sbjct:   97 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 278
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A6H5KME6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KME6_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 5.130e-106
Identity = 156/172 (90.70%), Postives = 159/172 (92.44%), Query Frame = 2 
Query:  917 MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELL+KCK+GETPEMGRWGSLPLNGQVSCEGP             GFMMRKDLEQKVDP+SVKDHMCY
Sbjct:    1 MEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLEKCKNGETPEMGRWGSLPLNGQVSCEGP-------------GFMMRKDLEQKVDPRSVKDHMCY 159
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A835YYT9_9STRA (NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYT9_9STRA)

HSP 1 Score: 315 bits (808), Expect = 1.350e-99
Identity = 142/182 (78.02%), Postives = 161/182 (88.46%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            Q+GGWLPLAAM KVA ++G   M++YEVATFYTMFNREKRG++FIQLCGTTPCMVCGS DIKKTI +ELGIK+G TTADG+FTLLEVECLG+CANAPM+Q+NDDY+ECLTP+TMKEL+  CK+G  P MG+WGSLP+NGQVSCEGPHGKTSL   P GPGFMMRKDLE KVDP SVK HM Y
Sbjct:   87 QNGGWLPLAAMNKVAAVIGVQPMRIYEVATFYTMFNREKRGQYFIQLCGTTPCMVCGSNDIKKTITEELGIKDGETTADGLFTLLEVECLGSCANAPMIQLNDDYYECLTPQTMKELIAACKAGNPPAMGKWGSLPMNGQVSCEGPHGKTSLTEPPPGPGFMMRKDLEPKVDPASVKAHMSY 268
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S2FXN0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FXN0_9STRA)

HSP 1 Score: 286 bits (731), Expect = 5.740e-88
Identity = 139/193 (72.02%), Postives = 157/193 (81.35%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSL-EGTPTGPGFMMRKDL----------EQKVDPKSVKDHMCY 1432
            Q+GGWLPLAAM+ VAK+V    M+VYEVATFYTMFNREKRGK+FIQLCGTTPCMVCGSEDIK+TIMDELGI +G TT DG+FTLLEVECLGACANAPM+Q+NDDY+ECLTP+TM ELL  CK G  PEMG+WGSLP+NGQVSCEGP GKTSL +G P  P   +R D+          E  VDP SVK+HMCY
Sbjct:   91 QNGGWLPLAAMDCVAKVVEVPPMRVYEVATFYTMFNREKRGKYFIQLCGTTPCMVCGSEDIKQTIMDELGIHDGETTDDGLFTLLEVECLGACANAPMIQMNDDYYECLTPKTMTELLKLCKDGSPPEMGKWGSLPMNGQVSCEGPQGKTSLFDGPP--PPAPLRTDMFGDPAWKPGAEGSVDPVSVKEHMCY 281
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S2MPT9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MPT9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 3.210e-87
Identity = 131/182 (71.98%), Postives = 151/182 (82.97%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA+IV  +  +VYEVA+FYTMFNR KRGK+F+QLCGTTPCM+CGSEDIKKTI D LGIKNG TT DGMFTLLEVECLGACANAPM+Q+NDDY+ECLTP+T  ELL+ CK GE P MG+WGSLP+NGQVSCEGP GKT+L   P  P     +  + KVDP SVK+HM Y
Sbjct:   80 QHGGWLPVAAMDKVAQIVDTNPARVYEVASFYTMFNRTKRGKYFLQLCGTTPCMICGSEDIKKTIEDHLGIKNGETTKDGMFTLLEVECLGACANAPMIQMNDDYYECLTPKTTIELLEACKRGEPPAMGKWGSLPMNGQVSCEGPLGKTALFEEPVPPKVEEGRFKDGKVDPVSVKEHMAY 261
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S1DC55_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DC55_CYCTE)

HSP 1 Score: 281 bits (718), Expect = 3.460e-86
Identity = 133/183 (72.68%), Postives = 150/183 (81.97%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGT-PTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA+IVG    +VYEVA+FYTMFNR K GKHFIQLCGTTPCM+CGSEDIK+TI   LGIKNG TT DG+FTLLEVECLGACANAPMVQ+NDDY+ECLTPET  ELL+ CK GETP MG+WGSLP+NGQVSCEGP GKTSL    P  P     +  + +VDP SVKD+M Y
Sbjct:   89 QHGGWLPVAAMDKVAQIVGAAPSRVYEVASFYTMFNRTKVGKHFIQLCGTTPCMICGSEDIKQTIEKHLGIKNGETTKDGLFTLLEVECLGACANAPMVQLNDDYYECLTPETTIELLEACKRGETPPMGKWGSLPMNGQVSCEGPKGKTSLTWKEPVAPTVDPNRFKDGEVDPASVKDNMAY 271
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S4E2R0_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2R0_9STRA)

HSP 1 Score: 280 bits (717), Expect = 1.350e-85
Identity = 133/182 (73.08%), Postives = 151/182 (82.97%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            QHGGWLP+AAM+KVA +VG   M+VYEVATFYTMFNRE  GK+FIQLCGTTPCMVCGSE IKK I D LGI+ G TT DG+FTL EVECLGACANAPMVQ+NDDY+ECLTP+++ ELL+ CK GE  EMGRWGSLP+NGQVSCEGP GKTSL   P  P + MR+DL+ +VDP SVK HM Y
Sbjct:  122 QHGGWLPVAAMDKVAALVGVAPMRVYEVATFYTMFNREPVGKYFIQLCGTTPCMVCGSEAIKKAIEDHLGIQEGETTKDGLFTLREVECLGACANAPMVQMNDDYYECLTPKSVVELLEACKRGEKHEMGRWGSLPMNGQVSCEGPRGKTSLGNGPPAP-YAMREDLKGEVDPASVKAHMGY 302
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A7S1BMX3_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BMX3_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.440e-85
Identity = 129/182 (70.88%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY 1432
            Q GGWLPLAAM+KVA++VG   M+VYEVATFYTMFNREKRGK+FIQLCGTTPCM+CG+ DIKKTI + LGI++G TT DG+FTLLEVECLGACANAPM+Q+NDDY+ECLTP+T  ELL+ CK G  P MG+WGSLP+NGQVSCEGP GKT L   P   GF+     E  VDP SVK+HM Y
Sbjct:   43 QAGGWLPLAAMDKVAQVVGVAPMRVYEVATFYTMFNREKRGKYFIQLCGTTPCMICGAGDIKKTITEHLGIEDGETTPDGLFTLLEVECLGACANAPMIQLNDDYYECLTPKTTIELLEACKKGAPPPMGKWGSLPMNGQVSCEGPLGKTCLTTIPA--GFVREGGFEGSVDPASVKEHMGY 222
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: M4B7W8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B7W8_HYAAE)

HSP 1 Score: 278 bits (712), Expect = 2.670e-85
Identity = 134/185 (72.43%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGTPT-GPGFMMRKD--LEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAM KVA+IV    ++VYEVATFYTMFNREK GK+FIQLCGTTPCM+CGSE+I+KTI D LGIK G TT DGMFTL EVECLGACANAPMVQINDDY+E LTPET++ELLD CK    P M +WGSLP+NGQ+SCEGP GKTSL+     GPGF MR D  L+ KV+PK +KD M Y
Sbjct:   87 QHGGWLPLAAMNKVARIVDAKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIRKTIEDHLGIKKGDTTEDGMFTLQEVECLGACANAPMVQINDDYYENLTPETIRELLDACKKDAPPLMNKWGSLPMNGQLSCEGPQGKTSLKWDKVPGPGFRMRPDDELKPKVNPKDIKDAMLY 271
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BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Match: A0A0N7L5T5_PLAHL (Nadh dehydrogenase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L5T5_PLAHL)

HSP 1 Score: 278 bits (710), Expect = 5.290e-85
Identity = 133/185 (71.89%), Postives = 151/185 (81.62%), Query Frame = 2 
Query:  887 QHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYTMFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFTLLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWGSLPLNGQVSCEGPHGKTSLEGT-PTGPGFMMR--KDLEQKVDPKSVKDHMCY 1432
            QHGGWLPLAAM KVA+IV    ++VYEVATFYTMFNREK GK+FIQLCGTTPCM+CGSE+IKKTI   LGIK G TT DG FTL EVECLGACANAPMVQINDD++E LTPET +ELLD CK   TP M +WGSLP+NGQ+SCEGP GKTSL+   P GPGF MR  +DL+ K++PK +KD M Y
Sbjct:   87 QHGGWLPLAAMNKVARIVDVKPIQVYEVATFYTMFNREKVGKYFIQLCGTTPCMICGSEEIKKTIETHLGIKEGETTKDGKFTLREVECLGACANAPMVQINDDFYENLTPETTRELLDACKKDATPPMSKWGSLPMNGQLSCEGPQGKTSLKWEKPPGPGFRMRPDEDLKPKINPKDIKDAMLY 271
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSE6_ECTSI1.390e-12798.90NUOE homolog, NADH dehydrogenase (Ubiquinone) subu... [more]
A0A6H5KME6_9PHAE5.130e-10690.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYT9_9STRA1.350e-9978.02NADH dehydrogenase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2FXN0_9STRA5.740e-8872.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2MPT9_9STRA3.210e-8771.98Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1DC55_CYCTE3.460e-8672.68Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4E2R0_9STRA1.350e-8573.08Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1BMX3_9STRA1.440e-8570.88Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
M4B7W8_HYAAE2.670e-8572.43Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0N7L5T5_PLAHL5.290e-8571.89Nadh dehydrogenase n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig105contigE-siliculosus-1a_F_contig105:68811..73621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size750
Model size2072
Exons5
Ec32 orthologEc-21_003400.1
Ec32 ortholog descriptionNUOE homolog, NADH dehydrogenase (ubiquinone) subunit
Hectar predicted targeting categoryother localisation
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.C
EC1.6.5.3,1.6.99.3
EggNOG OGsCOG1905@1,KOG3196@2759
EggNOG free text desc.NADH dehydrogenase (quinone) activity
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008137,GO:0008150,GO:0008152,GO:0008270,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
KEGG ModuleM00143,M00379,M00380,M00381,M00382,M00385,M00386,M00387,M00407,M00411
KEGG Pathwayko00190,ko01100,ko03420,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05168,ko05200,map00190,map01100,map03420,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map04714,map04723,map04932,map05010,map05012,map05016,map05168,map05200
KEGG ReactionR11945
KEGG TC3.D.1.6
KEGG koko:K03347,ko:K03943,ko:K10609
KEGG rclassRC00061
Preferred nameNdufv2
Seed eggNOG ortholog2880.D8LSE6
Seed ortholog evalue1.2e-105
Seed ortholog score389.4
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927551.9640496-UTR-E-siliculosus-1a_F_contig105:68810..694471622927551.9640496-UTR-E-siliculosus-1a_F_contig105:68810..69447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 68811..69447 -
1696318581.9364243-UTR-E-siliculosus-1a_F_contig105:68810..694471696318581.9364243-UTR-E-siliculosus-1a_F_contig105:68810..69447Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 68811..69447 -
1622927552.057629-UTR-E-siliculosus-1a_F_contig105:71632..721731622927552.057629-UTR-E-siliculosus-1a_F_contig105:71632..72173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 71633..72173 -
1696318581.9927099-UTR-E-siliculosus-1a_F_contig105:71632..721731696318581.9927099-UTR-E-siliculosus-1a_F_contig105:71632..72173Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 71633..72173 -
1622927552.077039-UTR-E-siliculosus-1a_F_contig105:73477..736211622927552.077039-UTR-E-siliculosus-1a_F_contig105:73477..73621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 73478..73621 -
1696318582.0075636-UTR-E-siliculosus-1a_F_contig105:73477..736211696318582.0075636-UTR-E-siliculosus-1a_F_contig105:73477..73621Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 73478..73621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927551.9811766-CDS-E-siliculosus-1a_F_contig105:69447..695631622927551.9811766-CDS-E-siliculosus-1a_F_contig105:69447..69563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 69448..69563 -
1696318581.953614-CDS-E-siliculosus-1a_F_contig105:69447..695631696318581.953614-CDS-E-siliculosus-1a_F_contig105:69447..69563Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 69448..69563 -
1622927552.0077147-CDS-E-siliculosus-1a_F_contig105:70084..702171622927552.0077147-CDS-E-siliculosus-1a_F_contig105:70084..70217Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 70085..70217 -
1696318581.9638135-CDS-E-siliculosus-1a_F_contig105:70084..702171696318581.9638135-CDS-E-siliculosus-1a_F_contig105:70084..70217Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 70085..70217 -
1622927552.0240798-CDS-E-siliculosus-1a_F_contig105:70780..708571622927552.0240798-CDS-E-siliculosus-1a_F_contig105:70780..70857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 70781..70857 -
1696318581.9737535-CDS-E-siliculosus-1a_F_contig105:70780..708571696318581.9737535-CDS-E-siliculosus-1a_F_contig105:70780..70857Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 70781..70857 -
1622927552.0424066-CDS-E-siliculosus-1a_F_contig105:71208..716321622927552.0424066-CDS-E-siliculosus-1a_F_contig105:71208..71632Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 71209..71632 -
1696318581.9831047-CDS-E-siliculosus-1a_F_contig105:71208..716321696318581.9831047-CDS-E-siliculosus-1a_F_contig105:71208..71632Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 71209..71632 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig105.359.1prot_E-siliculosus-1a_F_contig105.359.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig105 69448..71632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig105.359.1

>prot_E-siliculosus-1a_F_contig105.359.1 ID=prot_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=250bp
MTTAASCTSYRKRTTPFYNVYTTLHAFTTMGVLPRILRHASVAPPLYITV
SSPVSIVPSVFFWFFVLQHGGWLPLAAMEKVAKIVGQHEMKVYEVATFYT
MFNREKRGKHFIQLCGTTPCMVCGSEDIKKTIMDELGIKNGGTTADGMFT
LLEVECLGACANAPMVQINDDYFECLTPETMKELLDKCKSGETPEMGRWG
SLPLNGQVSCEGPHGKTSLEGTPTGPGFMMRKDLEQKVDPKSVKDHMCY*
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mRNA from alignment at E-siliculosus-1a_F_contig105:68811..73621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig105.359.1 ID=mRNA_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4811bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:68811..73621- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCGTTGCGCACGATAGGAGCTGCCACGCGGGCCCTTGCATCACGGCG
ACCATGTACCGTGCGAGCACCGTCCACCGTTAGCGCGGCGAGGAACGTAC
ACCGCACTGTTTCGGCTCGTGACGAAGTGCACCAACTGGGACAGGTGTGC
AAAAACTGGGAGCTCGCTCCTTGTCCTCGCCGTCTCGGTCTGTTGTATAT
TGCTGTATGTGTGTCTGTCTCCGTGCTTGAAGACCCCCAGCCGCACTTGT
TTCCTCTGGGACATCTATTCACCGGGTCCTTTTGCGGGGAGTGCATGCAT
GCAGACCTGTGTGTTCTTGTTGGCGGGGACAGCGTGCTGTGTCTCCAATC
GCAATGCCTCACGGATTGTGGTGCAGTTCCTCACCCAGGTGTAGCGTACA
TTATCAGAGAGCTCCGTCGAGGGTGCGCTCGAGGGTGCAACACAGCACGT
GGTTGGGCGTCGAAATTGGCGGCAATGTGCATAGCAGAGAGTATTTTCGG
GATTATTTTGTTGCATTGTTTCCTGTCCTTGTTTTTACTGCAGCAGCGTC
TGCACGAGGGGCGAATGGAAGCTCGATCCCCGCCGGCGTGTGTGTGTGTT
CTCCGACGTACATGCACATCTGCTGAGTACATTGCGTGTGCATTCATGTA
CTGCTGCTGTAAGCACAGATGGTGTACAGCATCACCTTACCCCCACGGTG
CTTCAGTGGCAACGAAGCACACAGAGGTGGTGTCGCGCTTTGAGACCTTG
CCGGCGGCACTGCTGCGACTTGCAGTGCGATGTCGAGCCAGAAGAACCCG
AATTGTGAGCTTTTGTGTACTACGGCGGCGCTCAATTGTTATCTTACATG
CACGGCAGTCGTCAAAGAAAACCCAATGTATACCTAAAGCCGTGCACAGC
AGTACTGCTCGCCCCACATGGGATACCAGGATATTGCACACCAGGACCAT
GGCGAGCATGGTGGGAGATAGGATAATCAAGTAGATGTAGTCGTCGGTGT
ATCAGCGTCAACGAGGTCTAGACAAAACACATTTCCTTGTCCGGGCGTCT
TGCCCCGACCCGACCTAGGACAACATGACAACACACCAGAACCATAAACT
TTGCAGACGATTCGGAGGGCGAGGAATCTACAAGGTTACCGCATCCGCGT
CAAGCGAAATCGCCTGCGTCAAAAGCAGTGCTGACTTTTGGCCATCCAGG
CCTTCGAACCGCACAACCTTCCTAACGAATGAGAGGCCGACCCCCCCCCC
CCCCCCCCCCCCCCCCCCACCACAACAACACAAGGGCACCCCGGACAAAA
ACAAGACGAAGGTCCTGCACNNNNNNNNNNCCCGCCTCAAAAACAGTGCC
GGTTTTTGGCCCCCCCGCCCCCCCCACCCCCCCCCCCCCCCAACGAAAGA
GAGGCCCCCCCCCCCCCCCCCCCCCCTCGACACCACACGACACAACAGCA
CAAGGACACCCCGGACAACAACGAGACGACGTTCTTCGACTTCACGGACG
AGAACTACGCCAGAGTGGAGAAGATCATGGCCAAGTACCCGGCCAACTAC
CGACAGGCATCGATCATCCCGCTGCTCGACCTGGCGCAGAGGCAGGCAAG
AGGACGAGACACAGGACTACAGTGGATACGCCGGTAGTTTTTTATGGATA
CTATTCCTAAACCTTGTTATTTTCCAGCACCGAGCAGACCTACAACGCGG
AGAATTTGGGTACTGTAACAGGTTACGGTTGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGCCGCCCCCGCCGCCCCCGCCAAGATAAAAAGGAAACTAT
TCTTCTTTTGGNNNNNNNGCAGGGGGTGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGCGTTAGGACGACCTGCCGCCGACTTCGACCT
AAAAGGATGAAATAGATTTCGTATCGTTGTTTGGTGTGTATGACGACGGC
AGCAAGTTGTACTTCATATCGGAAACGCACGACCCCATTTTACAACGTTT
ATACGACCCTGCACGCTTTTACTACTATGGGTGTTTTGCCACGCATCCTA
CGGCACGCCTCCGTTGCTCCTCCGCTATATATAACGGTTTCGTCCCCGGT
CTCCATCGTGCCATCTGTTTTTTTTTGGTTCTTCGTCCTGCAGCACGGGG
GCTGGCTGCCGCTGGCCGCGATGGAGAAGGTCGCCAAGATCGTGGGGCAG
CACGAGATGAAGGTGTACGAGGTGGCCACCTTCTACACCATGTTCAACCG
CGAGAAGCGGGGAAAGCACTTCATCCAGCTCTGCGGCACGACGCCGTGCA
TGGTGTGCGGCTCGGAGGACATCAAGAAGACCATCATGGACGAGCTCGGC
ATCAAGAACGGGGGTGAGAAAAGGGAGAGAAAGGAGCGAAGCTATACAGC
AGTCTCATTCCCCTAGGACACTTTGCACATTTGTTTGTTTTTTTGCTCTT
TCCCTTGCATTTGTTGCCAGCATGAACGAAAATATCAAATCACCCCCCCC
GCTCTGACTTCGTTGGCGCGAGTGGTGAGAACTGTGTCCCGGGTCTTCTC
TCATTCGTTTGTGCTCTGTTTGGTTAACCTACGGTCTGCGCAAAGAATTC
AAGCAACATGCCAACACTTCGCATAGCATCAACGATTGTGATTTCCACAC
AAGAATTTACCGGAAGTGCAGTTGACCAGCACGGTACAATTGATTGTTTT
TGTTGTTGTCTCAGGAACAACGGCGGACGGCATGTTCACGCTGTTGGAGG
TGGAGTGTCTCGGAGCTTGCGCGAACGCGCCCATGGTGCAGGTGCGTCAA
GTGCTGTTGATGCCGCTGTGCGGGCACGGGAGAGGGGAAATCGTGTTCCA
TTGCTCTCCATGCTTTTTGTGTGGACACACGCGCGAGAGGACGTGCGTGT
TACGCCCTGTTGTTTCGGACGTGTTTTGTTCATGGCCCCTCCTTTGCGTG
TGGTTTTCTGTGATGTTTTCACACATGAGGGCGTGTCTGTGCTGTCTCAA
GAATCGGGGGCGCTCACCAGCTACAGATGAAAATACGCGTGTTGCAACCC
ACACCACCGGGACTTGTCGGCACGGAGCGGGGCACCATGAGTACACACGC
CGGGCGCAACGTCCGCCCGAATCAAAGCCTACGCGCAAAGCCTCGCACGA
ATGGTGCAGCGTTATCGCGCGCAACCTCGTACATGGTGCTCTGGGTTGGT
TGGCCATGTAGAAGTTGAGCGCTTTCCACATCCACCAAACTGAAACGTCT
GCCTCGTCCCCCCCCCCCCCCACGGGCCTCCCGTGTCGTAACCCCTGTTA
TGTGCTGCTTCCGGCCGGCCTTCCGCGATTTCTCCAACCATCCCCGTGGA
ATAGATTAACGACGACTACTTCGAGTGCCTCACGCCCGAGACCATGAAGG
AGCTCCTGGACAAGTGCAAGAGCGGCGAGACGCCGGAGATGGGCCGGTGG
GGCAGCTTGCCGCTCAACGGACAAGTCAGCTGCGAGGGTAAGAAGCGAGG
GCCGCTTTTTCTTTCGCCGCAGTCGCTACTCTTTTTTTTTTTATTGCAGA
TGCACACATGCTCGTGCACGTCGGTATCGTGGAGAGCAAAAAAAACGTTT
GTTTGTTTTTTCGCTATTGTAGCGTACGCGGCTTTGTGCGTACGCACAAA
GAAAATGGTTGTCGTGGGAGACGCTTGAAGGCTTCCCCCCCGAAGTGATG
GGAGCACTTGTTCGGCCGGTGTTCTTGAGGAGTTTGTCGTTTTCCCACGG
GTCCCGGTTAGCGCGACTTTTCACATCGTTTGTTGCCAGCTTTTCCTGTG
TAGCTCAACTCACGCGCTTGGCCTGCACAGTCCAACTCTCTAGGTTTGTG
TGTGCGTTTTTTTTGTTAGCATGGACCGCGCTAGCGGCTGACCAATCAAA
AGGCGTCAGTCTCAGGCCGGCTGAAAACACAAACGCTTGTATGGTGTGTG
TATGTGTGCGCGCGCGCTCTGCTCCCTGCCTCTCCACATGTTTACCGCTG
AAATTCAGGCCCCCACGGAAAGACATCGCTGGAGGGAACGCCGACGGGAC
CCGGATTCATGATGCGGAAGGACTTGGAGCAGAAGGTCGACCCTAAGTCG
GTTAAGGACCACATGTGCTACTGATGACGCCGTGGGGCTGATTTAGCGTG
ATCTGGTTGTGATAGTTGCCGCTGCTGCGTGGCGGCGGCGGCGTGCGGGA
GAGAAGGGCGGCGATACGCGCTCGTATGCGTGATCTTTAACGCGCTTTGA
TTGGCGAGCTGCTTGTGGCGATGGTGTACGGGCGGCGAACAAGGGGAGCG
TGGGGGCCGGCGGGGGGGGCAGTAGCGGGAGTTAAGCTTACAAGGGGTTT
TGCTTTTGTGCGGTGTAGACGGCGAGGGCAGGAAGAGGTGGCAATGTGGA
AAATTGTGATCGGACGAGCACTCGTGTGTGTTGCCGTATTGTAATGCGTC
CTCAAGTCGTTGCTCGAACTTTCGTCGCTTCGAGAGCATTTGCCTCACGA
AGTCTGACCACCGCCGTGAAGAACGCTTTGTCGTTTCATTTTAGCGAACT
TGTTTTTCCTCTTTCTATCGGCTTATTGGTTTGGCGTTTGTCGGTTCTGG
TAGGCGTTGATACGAAGACGCGGGCCGAGGAACGGTTGAGTGTACTTTAG
GCGGTAGCACTTGCTAATCGATCCCTCATGCGCTTGGAAGAGGCTTCCTC
CAATCCACCAAGACTTGGGAAGACTTGGGAAGAAAATGAATCATCAACAG
AGTGCCTCCAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:68811..73621-

>mRNA_E-siliculosus-1a_F_contig105.359.1 ID=mRNA_E-siliculosus-1a_F_contig105.359.1|Name=mRNA_E-siliculosus-1a_F_contig105.359.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1500bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:68811..73621- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGACGACGGCAGCAAGTTGTACTTCATATCGGAAACGCACGACCCCATT
TTACAACGTTTATACGACCCTGCACGCTTTTACTACTATGGGTGTTTTGC
CACGCATCCTACGGCACGCCTCCGTTGCTCCTCCGCTATATATAACGGTT
TCGTCCCCGGTCTCCATCGTGCCATCTGTTTTTTTTTGGTTCTTCGTCCT
GCAGCACGGGGGCTGGCTGCCGCTGGCCGCGATGGAGAAGGTCGCCAAGA
TCGTGGGGCAGCACGAGATGAAGGTGTACGAGGTGGCCACCTTCTACACC
ATGTTCAACCGCGAGAAGCGGGGAAAGCACTTCATCCAGCTCTGCGGCAC
GACGCCGTGCATGGTGTGCGGCTCGGAGGACATCAAGAAGACCATCATGG
ACGAGCTCGGCATCAAGAACGGGGATGACGACGGCAGCAAGTTGTACTTC
ATATCGGAAACGCACGACCCCATTTTACAACGTTTATACGACCCTGCACG
CTTTTACTACTATGGGTGTTTTGCCACGCATCCTACGGCACGCCTCCGTT
GCTCCTCCGCTATATATAACGGTTTCGTCCCCGGTCTCCATCGTGCCATC
TGTTTTTTTTTGGTTCTTCGTCCTGCAGCACGGGGGCTGGCTGCCGCTGG
CCGCGATGGAGAAGGTCGCCAAGATCGTGGGGCAGCACGAGATGAAGGTG
TACGAGGTGGCCACCTTCTACACCATGTTCAACCGCGAGAAGCGGGGAAA
GCACTTCATCCAGCTCTGCGGCACGACGCCGTGCATGGTGTGCGGCTCGG
AGGACATCAAGAAGACCATCATGGACGAGCTCGGCATCAAGAACGGGGGA
ACAACGGCGGACGGCATGTTCACGCTGTTGGAGGTGGAGTGTCTCGGAGC
TTGCGCGAACGCGCCCATGGTGCAGGAACAACGGCGGACGGCATGTTCAC
GCTGTTGGAGGTGGAGTGTCTCGGAGCTTGCGCGAACGCGCCCATGGTGC
AGATTAACGACGACTACTTCGAGTGCCTCACGCCCGAGACCATGAAGGAG
CTCCTGGACAAGTGCAAGAGCGGCGAGACGCCGGAGATGGGCCGGTGGGG
CAGCTTGCCGCTCAACGGACAAGTCAGCTGCGAGGATTAACGACGACTAC
TTCGAGTGCCTCACGCCCGAGACCATGAAGGAGCTCCTGGACAAGTGCAA
GAGCGGCGAGACGCCGGAGATGGGCCGGTGGGGCAGCTTGCCGCTCAACG
GACAAGTCAGCTGCGAGGGCCCCCACGGAAAGACATCGCTGGAGGGAACG
CCGACGGGACCCGGATTCATGATGCGGAAGGACTTGGAGCAGAAGGTCGA
CCCTAAGTCGGTTAAGGACCACATGTGCTACTGAGCCCCCACGGAAAGAC
ATCGCTGGAGGGAACGCCGACGGGACCCGGATTCATGATGCGGAAGGACT
TGGAGCAGAAGGTCGACCCTAAGTCGGTTAAGGACCACATGTGCTACTGA
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