mRNA_E-siliculosus-1a_M_contig99.17777.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17777.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17777.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: D7FI51_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI51_ECTSI)

HSP 1 Score: 617 bits (1592), Expect = 1.730e-218
Identity = 313/330 (94.85%), Postives = 318/330 (96.36%), Query Frame = 3 
Query:  123 MLAHCTTALVLLGLPLGIQGFVPSLGNNAASANNGATTTPTPGTTAAVAGCRRRQHEHRIANGPSSSCPAPPAHARRAAPRPASPASLPEYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP 1112
            MLAHCTTALVLLGLPLGIQGFVPSL NNAA ANNGA TTPTPGTTAA  GCRR QHEHRIA+G SSSC APPAHA RAAPRPASPASLPEYFMALFGGNKGSSAT+ SKA+ELEADLLSAI+GVQGRGRDV+QEQRELVDKAVEALESDGG PNAASSP VDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP
Sbjct:    1 MLAHCTTALVLLGLPLGIQGFVPSLANNAAGANNGAATTPTPGTTAAATGCRRWQHEHRIASG-SSSCRAPPAHAHRAAPRPASPASLPEYFMALFGGNKGSSATRASKAEELEADLLSAIKGVQGRGRDVTQEQRELVDKAVEALESDGGAPNAASSPLVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQRPPSPPPP 329
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A835Z824_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z824_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.160e-81
Identity = 129/206 (62.62%), Postives = 156/206 (75.73%), Query Frame = 3 
Query:  498 GRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF-SEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTP---PEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSER----LRIARGNKGTLFVLQR 1091
            GRG+ V   Q+E VD  +  LE+ GGVP+ A +  +DG WRL++T+TPGTASP+QRSFV VD F+IYQ+I L+ ++ P TV NVVDFG RVG+L V ALAST  RP++GFVPR+GDGR  GLN+ GVSQT     P  P  RIDF+FD+AGFD + LPF IPYPVPFR+ GDEVKGWID+TYLS +    LRIARGNKGT FVL R
Sbjct:    3 GRGKGVEGAQKERVDSLIAELEASGGVPDGACADSIDGVWRLLYTSTPGTASPIQRSFVSVDAFSIYQNIALYGADAPATVANVVDFGARVGRLEVAALASTARRPLDGFVPRRGDGRILGLNVFGVSQTAEEGAPRRPGARIDFKFDDAGFDLKLLPFRIPYPVPFRILGDEVKGWIDITYLSRQPEGGLRIARGNKGTTFVLVR 208
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A4D9CNY0_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CNY0_9STRA)

HSP 1 Score: 249 bits (636), Expect = 5.680e-75
Identity = 128/249 (51.41%), Postives = 167/249 (67.07%), Query Frame = 3 
Query:  363 RPASPASLPEYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLF----SEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPED--PSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 1091
            +P +P SLP   +A +    G+S          E  LL AI+G+  R    S + +  V   ++ LE+  G+P A ++  ++G WRL++T++  TASP+Q +FVG   FA+YQDID+     S  P TVTN+VDFG  +G L V ALASTP+RP+  F PR GDGRFFGLNILG+S+T  P D  P  RIDF+FD AGFD   LPF IPYPVPFRL  DEVKGW++VTYLS RLR++RGNKGT+FVL++
Sbjct:   31 KPPTPTSLPAA-LASWPLTLGASRKSPRVLPNTENSLLQAIQGLDRREVQNSVQAQGRVSGLIKELEAAKGIPKATTTREINGKWRLLYTSSDSTASPIQNTFVGNKAFAVYQDIDIAPSASSSAPGTVTNIVDFGGAIGALNVQALASTPARPIPNFAPRLGDGRFFGLNILGISKTEVPRDSDPDDRIDFKFDNAGFDLGLLPFRIPYPVPFRLLNDEVKGWLEVTYLSGRLRVSRGNKGTIFVLEK 278
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A6V1SXP2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SXP2_HETAK)

HSP 1 Score: 248 bits (634), Expect = 9.580e-75
Identity = 122/207 (58.94%), Postives = 146/207 (70.53%), Query Frame = 3 
Query:  471 LLSAIEGVQGRGRDVSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSERLRIARGNKGTLFVLQR 1091
            LL  +  +  RG        E V + V  LE   G+P+ A  P ++G WRL+ TTTPGTASP+QRSFVG   F+++QDIDL     PTV NVV+FG  +G L V ALAST +RP+ GFVPR+GDG+  GLNI GVS T PP +P +RIDF+FD A FDF  LPF IPYPVPFR  GDEV GWID+TYLSE LRIARGNKGT F+LQ+
Sbjct:   68 LLETLAALTRRGAGADAAAAERVAEQVAVLERTQGIPDPADYPGLNGRWRLLHTTTPGTASPIQRSFVGAAAFSVFQDIDLARPDRPTVANVVEFG-SLGVLTVEALASTAARPLPGFVPRRGDGKILGLNIFGVSSTEPPANPKQRIDFKFDYAAFDFNFLPFAIPYPVPFRYLGDEVTGWIDITYLSESLRIARGNKGTTFILQK 273
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A5J4YBD5_9CHLO (Putative plastid-lipid-associated chloroplastic-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YBD5_9CHLO)

HSP 1 Score: 244 bits (624), Expect = 3.680e-71
Identity = 126/225 (56.00%), Postives = 156/225 (69.33%), Query Frame = 3 
Query:  438 KTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQRPPSP 1103
            K S  KE    LL AI  V+GRG+  +S EQ   ++ AVE+LE+D GV +   SP ++G WRL+FTT PG+ASP+Q++FVGVD F +YQD+ L S     V N+VDFG +VG L+V A AST S    GFVPR+  G    L + G S  TPP  P+ R+DFQFD+A F F ALPF IPYPVPF+L GDE KGWIDVTYLS+  +LR+ RGNKGTLFVL + PSP
Sbjct:   56 KRSSVKEARESLLGAITDVKGRGKSGMSPEQLSKLEAAVESLEADRGVSDPTKSPLLEGRWRLLFTTRPGSASPIQKTFVGVDAFTVYQDVLLSSAEKVRVNNIVDFGAKVGTLKVEAEASTDSNTRPGFVPRQKPG----LAVFGKSSNTPPVHPNMRVDFQFDKAAFAFSALPFKIPYPVPFKLLGDETKGWIDVTYLSQDGKLRLTRGNKGTLFVLLKDPSP 276
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A7R9VSS3_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VSS3_9CHLO)

HSP 1 Score: 242 bits (617), Expect = 3.230e-70
Identity = 125/238 (52.52%), Postives = 160/238 (67.23%), Query Frame = 3 
Query:  390 EYFMALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRV-DGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 1091
            E F  L    +  S     K  + +A +L A+ GV+GRG+  +S+EQR  ++ AVE LE+DGGV       ++ DG WRL+FT+ PGTASP+Q +F GV+ F+++QD+ L  E  P + NVVDFGP VG LRV ALAST ++P+EGF PRKG     GL   G S   PP+ P  RIDFQFD+A F F+ +PF IPYPVPFRL GDE KGW+DVTY+S     R++RGNKGTLFVL R
Sbjct:   34 EDFKTLSLRRRSGSRGPVGKVSDAQATILQALTGVKGRGKSGLSEEQRAAINAAVELLEADGGVGKPTRDEQLLDGRWRLLFTSRPGTASPIQNTFTGVEAFSVFQDVQLRGE-QPRIDNVVDFGPDVGYLRVEALASTDNKPLEGFTPRKG----AGLPFFGKSFVYPPQKPDMRIDFQFDKAAFYFKKVPFTIPYPVPFRLLGDETKGWLDVTYISRDGNFRLSRGNKGTLFVLVR 266
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A2P6TS10_CHLSO (Putative plastid-lipid-associated chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TS10_CHLSO)

HSP 1 Score: 246 bits (629), Expect = 5.930e-67
Identity = 130/234 (55.56%), Postives = 156/234 (66.67%), Query Frame = 3 
Query:  399 MALFGGNKGSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQR 1091
            M L       +A  + K +  +  +L AI  VQGRG+  ++ EQ+   D AV  LE+DGG+     SP +DG WRL+FTT PGT+SP+QR+F  VD F IYQDIDL  E  P V  VVDFG  VG LRV A AST SRP+ GF PR+G+G  FG  I+G S + PP  P  R+DFQFD A F F ALPF +PYPVPFRL GDE KGWIDVTYLS   +LR+ RGNKGTLFVL +
Sbjct:  829 MTLAPSTVTQAAKPSRKVERAQQAVLDAIADVQGRGKGGMTPEQQAAFDAAVAVLEADGGMAAPTDSPLLDGRWRLLFTTRPGTSSPIQRTFTAVDSFKIYQDIDLAGE-QPRVCQVVDFGKNVGYLRVEAEASTDSRPLAGFTPRRGEGLPFG--IMGRSSSEPPARPGLRVDFQFDRAAFTFNALPFKVPYPVPFRLLGDEAKGWIDVTYLSPDGKLRLTRGNKGTLFVLAK 1059
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A2P6VFQ7_9CHLO (Putative plastid-lipid-associated chloroplastic isoform X1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFQ7_9CHLO)

HSP 1 Score: 233 bits (595), Expect = 9.060e-67
Identity = 123/223 (55.16%), Postives = 153/223 (68.61%), Query Frame = 3 
Query:  447 KAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPT-VTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVLQRPPSP 1103
            K +  +  LL  I GV+GRG+  ++ EQ+   D+AV  LE+DGGV    +SP +DG W L+FT+ PGTASP+QR+F  VD  ++YQDI++  E     V+ VVDFG  VG LRV A A+T SRP+ GF PR G G  FG  I+G S T PP  P  R+ FQFD A F  +ALPF IPYPVPF+L GDE KGWIDVTYLS   RLR++RGNKGTLFVLQ+  +P
Sbjct:   71 KLERAQQTLLGVIAGVEGRGKGGLTPEQQAAFDEAVAILEADGGVEAPTTSPLLDGRWALLFTSRPGTASPIQRTFTAVDSVSVYQDIEVGDECEQARVSQVVDFGSAVGFLRVEAEANTDSRPLPGFTPRVGQGLPFG--IMGKSSTGPPARPDMRVGFQFDRAAFTLKALPFKIPYPVPFKLLGDERKGWIDVTYLSPDGRLRLSRGNKGTLFVLQKEVAP 291
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BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A0D2MM87_9CHLO (Putative plastid-lipid-associated protein 12 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MM87_9CHLO)

HSP 1 Score: 232 bits (592), Expect = 1.320e-66
Identity = 120/234 (51.28%), Postives = 159/234 (67.95%), Query Frame = 3 
Query:  423 GSSATKTSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVK------GWIDVTYLSE--RLRIARGNKGTLFVLQRPP 1097
            G++ TK       E  +L A+   +GRG++ +S+E  + +  A+  LE DGGV +  +   +DG WRL++T+ PG+ASP+QR+F GV+ F IYQ++DL S++P  V NVVDFG  +G L V A AST SRP+EGF PR G+G  FG  ILG S  TPP  P+ RIDFQFD+A F F+ LPF+IPYPVPFR+ GDE K      GWID TY+++    R+ARGNKGTLFVL + P
Sbjct:   12 GTTRTKAGSRATTELAVLDALRSAKGRGKEGLSEEALQQLSLAISVLEQDGGVADPTTLDAIDGKWRLLYTSRPGSASPIQRTFTGVEAFKIYQEVDLSSDLP-RVNNVVDFGEEIGYLIVQAKASTESRPLEGFTPRVGEGLPFG--ILGKSFNTPPARPNSRIDFQFDQAAFHFKFLPFSIPYPVPFRILGDERKARPPSPGWIDTTYMNQDGTFRLARGNKGTLFVLVKAP 242
[Close]
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Match: A0A7S1WYS5_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1WYS5_9CHLO)

HSP 1 Score: 233 bits (593), Expect = 1.400e-66
Identity = 115/218 (52.75%), Postives = 152/218 (69.72%), Query Frame = 3 
Query:  441 TSKAKELEADLLSAIEGVQGRGRD-VSQEQRELVDKAVEALESDGGVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSEVPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILGVSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWIDVTYLSE--RLRIARGNKGTLFVL 1085
            TSK K  EA++L  ++  +GRG+D +S EQ+E +  A+  LE DGG+    +SP +DG W+L++T+ PG++SP+QR+F  VD F ++Q++ L       + N VDFG +VG LRV A A+T +RP+ GFVPR+G     GL  LG S T PP  P++RIDFQFD A F+F  LPF IPYPVPFRL GDE KGWIDVTY+S+    RI+RGNKGT FVL
Sbjct:   60 TSKVKRAEAEVLDILQSARGRGKDGLSSEQQEALAAAIYVLEEDGGLKAPTASPLIDGQWKLLYTSRPGSSSPIQRTFTAVDAFTVFQEVYLRQSDKARINNCVDFGEQVGILRVEAEANTDTRPIPGFVPRRG----AGLPFLGKSSTYPPSRPNQRIDFQFDRAAFNFYRLPFQIPYPVPFRLVGDEGKGWIDVTYMSKDGEFRISRGNKGTTFVL 273
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI51_ECTSI1.730e-21894.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z824_9STRA1.160e-8162.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CNY0_9STRA5.680e-7551.41Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6V1SXP2_HETAK9.580e-7558.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YBD5_9CHLO3.680e-7156.00Putative plastid-lipid-associated chloroplastic-li... [more]
A0A7R9VSS3_9CHLO3.230e-7052.52Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A2P6TS10_CHLSO5.930e-6755.56Putative plastid-lipid-associated chloroplastic n=... [more]
A0A2P6VFQ7_9CHLO9.060e-6755.16Putative plastid-lipid-associated chloroplastic is... [more]
A0A0D2MM87_9CHLO1.320e-6651.28Putative plastid-lipid-associated protein 12 n=1 T... [more]
A0A7S1WYS5_9CHLO1.400e-6652.75Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:418228..422942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size993
Model size1758
Exons6
Ec32 orthologEc-10_003560.1
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs2CN7K@1,2QUCQ@2759
EggNOG free text desc.PAP_fibrillin
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0016020,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Seed eggNOG ortholog2880.D7FI51
Seed ortholog evalue4e-176
Seed ortholog score624.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17777.1prot_E-siliculosus-1a_M_contig99.17777.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 418350..422299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936579.0154464-UTR-E-siliculosus-1a_M_contig99:418227..4183491622936579.0154464-UTR-E-siliculosus-1a_M_contig99:418227..418349Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 418228..418349 +
1696251140.295885-UTR-E-siliculosus-1a_M_contig99:418227..4183491696251140.295885-UTR-E-siliculosus-1a_M_contig99:418227..418349Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 418228..418349 +
1622936579.1896567-UTR-E-siliculosus-1a_M_contig99:422299..4229421622936579.1896567-UTR-E-siliculosus-1a_M_contig99:422299..422942Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 422300..422942 +
1696251140.3727763-UTR-E-siliculosus-1a_M_contig99:422299..4229421696251140.3727763-UTR-E-siliculosus-1a_M_contig99:422299..422942Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig99 422300..422942 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936579.0316336-CDS-E-siliculosus-1a_M_contig99:418349..4184061622936579.0316336-CDS-E-siliculosus-1a_M_contig99:418349..418406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 418350..418406 +
1696251140.3080945-CDS-E-siliculosus-1a_M_contig99:418349..4184061696251140.3080945-CDS-E-siliculosus-1a_M_contig99:418349..418406Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 418350..418406 +
1622936579.0550275-CDS-E-siliculosus-1a_M_contig99:418656..4189851622936579.0550275-CDS-E-siliculosus-1a_M_contig99:418656..418985Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 418657..418985 +
1696251140.3178089-CDS-E-siliculosus-1a_M_contig99:418656..4189851696251140.3178089-CDS-E-siliculosus-1a_M_contig99:418656..418985Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 418657..418985 +
1622936579.074048-CDS-E-siliculosus-1a_M_contig99:419529..4197431622936579.074048-CDS-E-siliculosus-1a_M_contig99:419529..419743Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 419530..419743 +
1696251140.3272204-CDS-E-siliculosus-1a_M_contig99:419529..4197431696251140.3272204-CDS-E-siliculosus-1a_M_contig99:419529..419743Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 419530..419743 +
1622936579.089487-CDS-E-siliculosus-1a_M_contig99:419966..4201401622936579.089487-CDS-E-siliculosus-1a_M_contig99:419966..420140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 419967..420140 +
1696251140.3366957-CDS-E-siliculosus-1a_M_contig99:419966..4201401696251140.3366957-CDS-E-siliculosus-1a_M_contig99:419966..420140Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 419967..420140 +
1622936579.106005-CDS-E-siliculosus-1a_M_contig99:421482..4215901622936579.106005-CDS-E-siliculosus-1a_M_contig99:421482..421590Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 421483..421590 +
1696251140.3532267-CDS-E-siliculosus-1a_M_contig99:421482..4215901696251140.3532267-CDS-E-siliculosus-1a_M_contig99:421482..421590Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 421483..421590 +
1622936579.118461-CDS-E-siliculosus-1a_M_contig99:422188..4222991622936579.118461-CDS-E-siliculosus-1a_M_contig99:422188..422299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 422189..422299 +
1696251140.364119-CDS-E-siliculosus-1a_M_contig99:422188..4222991696251140.364119-CDS-E-siliculosus-1a_M_contig99:422188..422299Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 422189..422299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17777.1

>prot_E-siliculosus-1a_M_contig99.17777.1 ID=prot_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=331bp
MLAHCTTALVLLGLPLGIQGFVPSLGNNAASANNGATTTPTPGTTAAVAG
CRRRQHEHRIANGPSSSCPAPPAHARRAAPRPASPASLPEYFMALFGGNK
GSSATKTSKAKELEADLLSAIEGVQGRGRDVSQEQRELVDKAVEALESDG
GVPNAASSPRVDGSWRLIFTTTPGTASPVQRSFVGVDGFAIYQDIDLFSE
VPPTVTNVVDFGPRVGQLRVTALASTPSRPMEGFVPRKGDGRFFGLNILG
VSQTTPPEDPSRRIDFQFDEAGFDFEALPFNIPYPVPFRLFGDEVKGWID
VTYLSERLRIARGNKGTLFVLQRPPSPPPP*
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mRNA from alignment at E-siliculosus-1a_M_contig99:418228..422942+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17777.1 ID=mRNA_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4715bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:418228..422942+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GTCAGCCAACAGCCAAAGCAGGCATCACGGCTGTTGCGCTTGTGTCTGGT
GGCGCGGGGTGAGATCGTAGACCCCTGTTGCCGCGTGTGTGGCCCAACGC
CCCCGGCAGAGGAGGAGAAGCCATGCTGGCCCACTGCACAACCGCGTTGG
TTCTGCTTGGGCTGCCGCTTGGAATACAGGTGACGTACGGTTAGCCCGCA
GCGCGAGCAGTGCATGTAACGGGACGGCTTACCGCCGTTTCGATGAGAGA
GCGTTGACCAGTGCGCAATCTGGGTTAATCCATGTCCTTTCCTTCAAGGG
TTTGTCGTTATCATGAAAAGCGCAGCAGGTTTGACCGTTGCATCAGCTCA
TCATCCACCGGAAAAACGCTCTCTCTTGGATTCGTAATATACCCAACCTC
TACACCCAACCTCTTCATCTTTTACGCAGGGATTTGTGCCGTCACTCGGG
AACAACGCTGCTAGTGCCAACAACGGCGCGACAACGACACCCACGCCTGG
TACTACTGCTGCCGTGGCTGGTTGCCGGCGGCGGCAGCATGAGCACAGAA
TAGCAAATGGACCCTCCTCCTCATGTCCGGCACCGCCGGCCCACGCCCGT
CGCGCTGCGCCTCGGCCAGCGTCGCCGGCGTCGCTGCCGGAGTACTTCAT
GGCCCTCTTCGGCGGAAACAAGGGGAGCTCGGCGACGAAAACCAGCAAGG
CGAAGGAGCTGGAGGCGGACCTGCTGTCGGCCATCGAAGGGGTTCAGGGC
AGGGGGAGGTATGGTTGGGGGCTGTGTGTCAGTTGGTGTTCCTACGTAGC
CTCGGGAAGAATGGCATCAGCTGTACGGTTCAAGCTCATCCCTATGTTCG
CACACAGCGAGCCAGACGCACGCCTGTGTGATGGCCACCAAACCACACTT
TGCCGTAGGTTCAGTGCTGAGACAAACCGCGCACCGGTTCTAGACCCACA
CCGTACCCCACGAAGAGGCGCTGACTATTGACTATGTACTCTACTACAGT
CCCCACCACACTGGGCTGTTTCTTCGTGAGCTCTAGCCCTGGTGTGGGTC
GGCGGACTTAGGGTTGCTGTTTGACTGTGTGTAATAGCTGGCAAGAGAGG
AGATACGAAGGGGAGAGACACAGAAGGAGGAATGCACCGAAACTGCGACA
GAAAACGGGGACCCCGCGCCATCATCCAACGCCTTTCACCACATACCCTC
GACGGGAAAATCCCAACTGAGTCCTATGTAACGGCTACTTACGACCTATC
TTCTTCCACCCACGAACATGGGCATGTGTACGTGCACGCCTCTACGCAAC
AGAGACGTCTCCCAGGAGCAGCGCGAGCTAGTGGACAAGGCCGTGGAGGC
CCTTGAGAGCGACGGGGGCGTCCCGAACGCGGCCTCGAGCCCCCGCGTCG
ACGGAAGCTGGAGGTTGATCTTCACGACCACCCCGGGAACCGCTTCGCCG
GTGCAGCGGTCGTTTGTTGGGGTGGATGGCTTCGCCATATACCAGGACAT
CGACCTCTTCTCGGAGGTGCGAGCTGTCGATTTTGGCTTTCGTTGTTGTC
GCTGCTCCTGCTGTGGCCGGGCGGGCTTTGATGTCCGCGTGTCTTCACAC
AGCAGACCCGCGGAGAAACATCTCGGCCTTACGATCCCGCTGCGAATGAG
ACACTTATCCGCGTGGCCTGCTCGGCAGTTAGCTTGTGTCGACGATTGTA
ACGCGGGCTCCCACCCCCAACCGTTTCGGCCCGCTACAGGTGCCCCCAAC
GGTAACCAACGTGGTGGACTTCGGACCCCGAGTAGGGCAGCTGAGAGTTA
CCGCTCTCGCCAGCACGCCTTCCAGGCCTATGGAAGGCTTCGTCCCGAGG
AAGGGCGACGGGCGCTTTTTCGGCCTAAATATATTGGGGGTTAGCCAAAC
CACCCCGCCGGAGGTGAGAGATAACAACGTGGTTGCTGTGCGGTTTTCAT
TTTGGCCCTTGAGAATCCCGTAATTGTTATTGTTTTTTGTTTGGCGACCG
CCCCGAAGGTGTCCAAGGCCGGTGCAAGACCTGTGCCTGCCTTTTTCCTG
ATTTGATTGAATGTTGCACGTTGTGTGTTCTCCGTTGTTGCAAACGGAAT
GCTTGCGGTGCATGCACAACCACAACTATCAACCGCACCCTGGTGATGTA
GAGTTACCGGTCCATGTCTGTGATGTGTGCCGCGTACGCGAGTAGTACGC
TCTTGTGCTTTGGTTGCATCTTGCCGCACGGCACGTACTGTGCTGCGGAG
AGGAGCAGTTTGGCAAGCCCTGTGAGCTACGCTTCCCAGCGTGGCCTGAA
TGTCGGGGATAATCCTCTGTATGACGCAAGCACAGCCAGCCGTAGGTAGG
TATGATCAGCATGGTAGAATACTCAGAAGTGAGCAAGAACACGTACTCAG
ATACAGTAGATGTATCCCCTCTAAATCGCTGTCAGACAAAGCAGTAGTAG
ACTATTGAGTATAGCAGCAACTAGACCTTTGCAGACGGCTAGGCTTTGCA
GGCAGCAGTAGGTTGACTGCCACATGCAGTAGTTAAAGGTAGCAGTAAAT
AGTTCTAGCTGGTCATTGCAGCAGTAAGGTAGTGGTCGTAGCAGCAATCT
ACTAGGGAATGGATGCATGGATGTCTGGATGCACACACACGGGACTGTCA
GGAGTAGACCGTTGTTTATTTCGTGCCTTGGAGACCCCACAAGTTCAGCC
GAGACGGAGATCTGGGGGTCGTGTAGAATTTTTTTTATTGTTGTACTTCT
GTTGTTTTGAGCTGAGCACAATGCGCACTCGCCCCTTGTGCTCACTCCTC
AAACAGCATCATCCAAGCAAACCTGACCCTGGAGTCAGTCAGTAATAACA
AGATCTTTCACACGTCGTCGTTCTGAGACACACCGAGCTGCAGCGGCACT
CCAGTGTATACCTCTGCTTGTAGGCTGCACAACAGCCTACGCATATAGCT
TTGCAGCTACTACTATTTGCAACCGCATATCCTCGAGACTGAGCTTGTGT
GATCCGCGGCTCGCCGTTCTTCTCGCCTAACGCCAACGATAGACTTTGCG
ATACCAGCTGCGGCAGCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTACCCTTTATCCTGTGATGTGTGTTCG
CCAGCGATGCGCGTCTTCTTGCCTTTCTTGGTTCCCCTCGATCAACGAGA
TGCTTCTTGCATGATGCACTCATCATCCATTCCCCCTCCTTGTGATGAAT
TACAGGACCCCAGCAGGCGTATCGACTTCCAGTTCGATGAAGCCGGCTTC
GACTTCGAGGCGCTGCCCTTCAACATCCCTTACCCGGTGCCCTTTCGCTT
GTTCGGGGACGAGGTGTGTTGGGCTTTTGCTTTTGTTTTTTTTGCTTTCC
TGCCATTGCCACCTATTTTTCTTGGTTTATTCAAGCGAGCAAGCAATGCC
AACGCGACCGTCAAGCTCAACGAACGCCGTTCGCTCTTTTGTTGTCGATG
ACGCTGAAGTCGTCAGCCGTTACTCGCAGCAAGCGGCGCAGACGCGCGCC
GCCATGTAAGTGCTGAAATAATGCACTCTTCCTAAACTTTTTTTTTTGGC
TCTTTGTCGTGTAATTGAAATGACCAGCCTCGCTGTGATTTTCGTGCGCA
TGATTCTGCGGTATTTAGTATGTGTGCGGGTGCGATCGTGTGTGTGTTCG
CAGCATGCGTGCTGCTTCGAAGTTCTCGAAGGCGTAGAGCGACAGATGTA
CGCGCTTTGCGTGTTTTTGCCTTTCGTTCTTTCCGTTTTATGGCCATCAC
CACTCTATCCAGCTGATCAATGAAGTAGCCTCAACGGCAGCGTTGACCGC
TCCACGGGTGTGCTTGTTTCTTGTGGGATGCGCGTGTGCCTCCCTACTTT
CACGAAGCCTTTATGTGTGTGTTACGCTCAATGTTTACTTGTTTGCTTCT
CGCTCGGGCAGGTGAAGGGGTGGATAGACGTCACCTACCTGAGCGAGCGC
TTACGGATAGCAAGGGGAAACAAGGGCACCCTCTTCGTGCTCCAGCGGCC
ACCATCGCCACCACCGCCATAGTCGATGACAGCACCGCCGTAGTTTATTG
CGTTGTGTTGATTTGCGTTGAATCGCCATGATTGCTTCCGTCCCCGGCGT
TCGGTTGAGTTATCGCACATTCGGTAGCGCCCTGGACTCGGTCCCGTGCT
TTTTTCAGTACTTGCTCTTGTTTGGTTTCGAAGCAGAGCATGCGAGTTTC
GCTGCATCTAGGTATCTAGATACCTCTTTGTGTGTGTGTCTCTCTCTCTC
CGTCAGCTTTCGTACGGGAGATCGGCAATGAAAGCTCAGCCGACACTATT
CTGATGCTTTTTTGTAGCATCTGCTGCTGCTGCTGCTGCTGCTGCTGATG
TTTTAGGGGGTGAAATGTGGAAGCGCCGGGGGGTTGAGCATGATCAAGTT
TCGAGGGTTAGGGTTCACCAGCATTGTCATTGCAAAATGTTGAAAAATAT
TTGGTCTTCTAGACTTGTGCTTCAGATTGGGCAATAGTGGTGGCAACGAC
CATGTAGTTGCGTTGTTATGGTCTGTGTTGGAACAGCGTTGTCGACATAG
CAACAACCACGGGTGGTGGCACTTGCTTGGTCACCATGCAGAGAAAACAG
GCGATCTGGACCCGATACAGCCTTCGAACAAGGTACTCCGAAGTACGAAC
ATACGACCCCTCATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:418228..422942+

>mRNA_E-siliculosus-1a_M_contig99.17777.1 ID=mRNA_E-siliculosus-1a_M_contig99.17777.1|Name=mRNA_E-siliculosus-1a_M_contig99.17777.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1986bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:418228..422942+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCTGGCCCACTGCACAACCGCGTTGGTTCTGCTTGGGCTGCCGCTTGG
AATACAGATGCTGGCCCACTGCACAACCGCGTTGGTTCTGCTTGGGCTGC
CGCTTGGAATACAGGGATTTGTGCCGTCACTCGGGAACAACGCTGCTAGT
GCCAACAACGGCGCGACAACGACACCCACGCCTGGTACTACTGCTGCCGT
GGCTGGTTGCCGGCGGCGGCAGCATGAGCACAGAATAGCAAATGGACCCT
CCTCCTCATGTCCGGCACCGCCGGCCCACGCCCGTCGCGCTGCGCCTCGG
CCAGCGTCGCCGGCGTCGCTGCCGGAGTACTTCATGGCCCTCTTCGGCGG
AAACAAGGGGAGCTCGGCGACGAAAACCAGCAAGGCGAAGGAGCTGGAGG
CGGACCTGCTGTCGGCCATCGAAGGGGTTCAGGGCAGGGGGAGGGATTTG
TGCCGTCACTCGGGAACAACGCTGCTAGTGCCAACAACGGCGCGACAACG
ACACCCACGCCTGGTACTACTGCTGCCGTGGCTGGTTGCCGGCGGCGGCA
GCATGAGCACAGAATAGCAAATGGACCCTCCTCCTCATGTCCGGCACCGC
CGGCCCACGCCCGTCGCGCTGCGCCTCGGCCAGCGTCGCCGGCGTCGCTG
CCGGAGTACTTCATGGCCCTCTTCGGCGGAAACAAGGGGAGCTCGGCGAC
GAAAACCAGCAAGGCGAAGGAGCTGGAGGCGGACCTGCTGTCGGCCATCG
AAGGGGTTCAGGGCAGGGGGAGAGACGTCTCCCAGGAGCAGCGCGAGCTA
GTGGACAAGGCCGTGGAGGCCCTTGAGAGCGACGGGGGCGTCCCGAACGC
GGCCTCGAGCCCCCGCGTCGACGGAAGCTGGAGGTTGATCTTCACGACCA
CCCCGGGAACCGCTTCGCCGGTGCAGCGGTCGTTTGTTGGGGTGGATGGC
TTCGCCATATACCAGGACATCGACCTCTTCTCGGAGAGACGTCTCCCAGG
AGCAGCGCGAGCTAGTGGACAAGGCCGTGGAGGCCCTTGAGAGCGACGGG
GGCGTCCCGAACGCGGCCTCGAGCCCCCGCGTCGACGGAAGCTGGAGGTT
GATCTTCACGACCACCCCGGGAACCGCTTCGCCGGTGCAGCGGTCGTTTG
TTGGGGTGGATGGCTTCGCCATATACCAGGACATCGACCTCTTCTCGGAG
GTGCCCCCAACGGTAACCAACGTGGTGGACTTCGGACCCCGAGTAGGGCA
GCTGAGAGTTACCGCTCTCGCCAGCACGCCTTCCAGGCCTATGGAAGGCT
TCGTCCCGAGGAAGGGCGACGGGCGCTTTTTCGGCCTAAATATATTGGGG
GTTAGCCAAACCACCCCGCCGGAGGTGCCCCCAACGGTAACCAACGTGGT
GGACTTCGGACCCCGAGTAGGGCAGCTGAGAGTTACCGCTCTCGCCAGCA
CGCCTTCCAGGCCTATGGAAGGCTTCGTCCCGAGGAAGGGCGACGGGCGC
TTTTTCGGCCTAAATATATTGGGGGTTAGCCAAACCACCCCGCCGGAGGA
CCCCAGCAGGCGTATCGACTTCCAGTTCGATGAAGCCGGCTTCGACTTCG
AGGCGCTGCCCTTCAACATCCCTTACCCGGTGCCCTTTCGCTTGTTCGGG
GACGAGGACCCCAGCAGGCGTATCGACTTCCAGTTCGATGAAGCCGGCTT
CGACTTCGAGGCGCTGCCCTTCAACATCCCTTACCCGGTGCCCTTTCGCT
TGTTCGGGGACGAGGTGAAGGGGTGGATAGACGTCACCTACCTGAGCGAG
CGCTTACGGATAGCAAGGGGAAACAAGGGCACCCTCTTCGTGCTCCAGCG
GCCACCATCGCCACCACCGCCATAGGTGAAGGGGTGGATAGACGTCACCT
ACCTGAGCGAGCGCTTACGGATAGCAAGGGGAAACAAGGGCACCCTCTTC
GTGCTCCAGCGGCCACCATCGCCACCACCGCCATAG
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