mRNA_E-siliculosus-1a_M_contig99.17776.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17776.1 vs. uniprot
Match: D7FI50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI50_ECTSI) HSP 1 Score: 905 bits (2339), Expect = 0.000e+0 Identity = 648/706 (91.78%), Postives = 653/706 (92.49%), Query Frame = 2 Query: 578 SADGEDRRSRWRQFGSELSVELEITTEAVASAGTAFLSEEPSLWRDYEGRENARDRGVLARSNRTVSLSPEGPP-LQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTLGVPAAPSRDTSGASSGXXXXXXXXXXXXXXXXXXXGGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSASSPXXXXXXXXXXXXGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAGGXXXXXXXXXXX-SGRRKMSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLDLAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAAAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPALGSRRRRGSEHQYLSLDGGXXXXXXXXXXXXXXXXXXXXDGGAVKDISPSASPGHHVRGAGFGRTRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 2689
+ DGEDRRSRWRQFGSEL+VELEITTEAVASAGTAFLSEEPSLWRDYEGRENARDRGVLARSNRTVSLSPE PP LQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNT GV AAPS+DTSGAS G XXXXXXXXXXXXXXXX RRRGIGG+FATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPS SS XXXXXXXXXXX GAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAGGXXXXXXXXXXX SGRRKMSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPL+LAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPA GSRRRRGSEHQYLSLDGGXXXXXXXXXXXXXXXXXXXXDGGAVKDISPSASPGHHVRGAGF RTRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG
Sbjct: 17 ATDGEDRRSRWRQFGSELNVELEITTEAVASAGTAFLSEEPSLWRDYEGRENARDRGVLARSNRTVSLSPEAPPPLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTPGVAAAPSKDTSGASCGAGGXXXXXXXXXXXXXXXXXXRRRGIGGNFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSTSSXXXXXXXXXXXXGGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAGGXXXXXXXXXXXXSGRRKMSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPTPMTSASPSAGLRLPRLRPAAATPTTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQGSRRRRGSEHQYLSLDGGXXXXXXXXXXXXXXXXXXXXDGGAVKDISPSASPGHHVRGAGFSRTRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 719
BLAST of mRNA_E-siliculosus-1a_M_contig99.17776.1 vs. uniprot
Match: A0A6H5JVH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH6_9PHAE) HSP 1 Score: 521 bits (1342), Expect = 4.540e-175 Identity = 364/388 (93.81%), Postives = 366/388 (94.33%), Query Frame = 2 Query: 275 MDPKSEWALGEFRDPPIELRILEHRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------RVLPVRTAYQGERLTGLLVVKFDVASADGEDRRSRWRQFGSELSVELEITTEAVASAGTAFLSEEPSLWRDYEGRENARDRGVLARSNRTVSLSPEGPPLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTLGVPAAPSRDTSGASSGXXXXXXXXXXXXXXXXXXXGGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPSASSPXXXXXXXXXXXXGAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 1417
MDPKSEWALGEFRDPPIELRILEHRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RVLP TAYQGERLTGLLVVKFDVASADGEDRRSRWRQFG+EL+VELEITTEAVASAGTAFLSEEPSLWRDYEGREN RDRGVLARSNRTVSLSPEG LQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNT GV A PSRDTSGASSG XXXXXXXXXXXXXXXXXX GRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCP SSP XXXXXXXXX GAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG
Sbjct: 1 MDPKSEWALGEFRDPPIELRILEHRVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGRVLPAWTAYQGERLTGLLVVKFDVASADGEDRRSRWRQFGTELNVELEITTEAVASAGTAFLSEEPSLWRDYEGRENTRDRGVLARSNRTVSLSPEGSQLQSGAELVYALDMEVQVPVDSLGQNVVLEALVSPPSGRRSECVNTRGVAAGPSRDTSGASSGAXXXXXXXXXXXXXXXXXXXGRRRGIGGDFATRLDGLFALSRVAPVRLPVRRCFLPLRVVQPITVTSRSCPFTSSPAAXXXXXXXXX-GAFAGAIGRCLVALEVRNDHPAAAITVHDVEVHVDATARCGDRSSSRGFSAPGKAG 387
BLAST of mRNA_E-siliculosus-1a_M_contig99.17776.1 vs. uniprot
Match: A0A6H5JW59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW59_9PHAE) HSP 1 Score: 422 bits (1085), Expect = 1.090e-136 Identity = 342/409 (83.62%), Postives = 345/409 (84.35%), Query Frame = 2 Query: 1469 MSGGVPVXXXXXXXXXXXXXXXGLDGSIEQPPLAGAGSLGGGGAPATGSFSRVFSASWVAKPPLPLDLAPGEVQGFVVSISPAGEPLPPRRAGGHFESPVTFVWTLAKGGAAAVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSVHLAQWQSEQRARDEVLVRVKGQPRVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPALGSRRRRGSEHQYLSLDGGXXXXXXXXXXXXXXXXXXXXDG-GAVKDISPSASPGHHVRGAGFGRTRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-APTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYVPSCPYEVFVEG 2689
MSGGVPV GLDGSIEQPPL GA SLGGGGAPATGSF RVFSASWVAKPPLPL+LAPGEVQGFVVSISPAGEPLPPRRAGGH ESPVTFVWTL KGGAAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TSV+LAQWQSEQRARDEVLVRVKGQP+VKLNRVFEVSLQVRNLSDSARDLVVMFTEDPA SRRRR SEHQ LSLDG XXXXXXXXXXXXXXXXXXXX GAVKDISPSASPGHH RGAGFGRTR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVY PSCPYEVFVEG
Sbjct: 1 MSGGVPVGGAFAPLE-------GLDGSIEQPPLVGASSLGGGGAPATGSFLRVFSASWVAKPPLPLELAPGEVQGFVVSISPAGEPLPPRRAGGHLESPVTFVWTLGKGGAAAXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTSASPSAGLRPTVSAATPTTSVYLAQWQSEQRARDEVLVRVKGQPKVKLNRVFEVSLQVRNLSDSARDLVVMFTEDPAQDSRRRRDSEHQTLSLDGXXXXXXXXXXXXXXXXXXXXXXXXGAVKDISPSASPGHHNRGAGFGRTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTCLLGDLLPVDAAVPLGRLERGAEHGATVRLTAARAGLARLSSLCLRDALTGSVYAPSCPYEVFVEG 393 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17776.1 >prot_E-siliculosus-1a_M_contig99.17776.1 ID=prot_E-siliculosus-1a_M_contig99.17776.1|Name=mRNA_E-siliculosus-1a_M_contig99.17776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=806bp MDPKSEWALGEFRDPPIELRILEHRVAGGGAAAAAAARGGAGGGVAGGSPback to top mRNA from alignment at E-siliculosus-1a_M_contig99:411136..418108- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17776.1 ID=mRNA_E-siliculosus-1a_M_contig99.17776.1|Name=mRNA_E-siliculosus-1a_M_contig99.17776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=6973bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:411136..418108- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:411136..418108- >mRNA_E-siliculosus-1a_M_contig99.17776.1 ID=mRNA_E-siliculosus-1a_M_contig99.17776.1|Name=mRNA_E-siliculosus-1a_M_contig99.17776.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=4836bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:411136..418108- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |