mRNA_E-siliculosus-1a_M_contig99.17762.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: D7FI34_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI34_ECTSI) HSP 1 Score: 424 bits (1089), Expect = 8.600e-146 Identity = 238/239 (99.58%), Postives = 239/239 (100.00%), Query Frame = 1 Query: 265 RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS 981
RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTV+NFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS
Sbjct: 47 RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVSNFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS 285
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE) HSP 1 Score: 422 bits (1084), Expect = 1.050e-139 Identity = 223/239 (93.31%), Postives = 223/239 (93.31%), Query Frame = 1 Query: 265 RASLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKEAALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHXXXXXXXXXXXXXXMFRRLHMRLDLVHPGDVSFS 981
R SLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKE ALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRH MFRRLHMRLDLVHPGDVSFS
Sbjct: 420 RTSLQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLLKEGALAQAKATARKNQVAEEQVNIEAVYHQLAMLRSKLAATAAANTDIPASEAAEGAQMENALLTLVEANVRVVEGQRHALENMEKTVDRMERMFRRLHMRLDLVHPGDVSFS 658
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A0B6Z005_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Z005_9EUPU) HSP 1 Score: 67.4 bits (163), Expect = 5.050e-10 Identity = 41/113 (36.28%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 274 LQELHLAIF---QGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAV-CDSPAVLAILIDHGADVTVANFDGLTPQRLCEQ 600
LQ+ L IF Q AK + + D L + GQ PLH+A KG V+ ++VE A+L+AVD GN V+H A+ +SP ++ +L+ GA+V+V N + P + Q
Sbjct: 22 LQDSPLRIFKCAQNGNAKEVARIIKSDPTRLHARNPQGQMPLHVAASKGHLVVVEVIVEAKADLDAVDNQGNTVLHLAIIAESPDIVTLLMKSGANVSVRNNAHMMPVHVAAQ 134
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A6P4ZEQ1_BRABE (LOW QUALITY PROTEIN: ankyrin repeat domain-containing protein 46-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZEQ1_BRABE) HSP 1 Score: 62.8 bits (151), Expect = 9.520e-8 Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 358 SEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRLCEQYCPPRLKERMLQLL 642
++ D G+TPLHLA +G+ + R+LVE GA L AVD GN +H +C LID G + N GLTP L + +K+++LQLL
Sbjct: 25 NQRDPRGRTPLHLAACRGAEDVMRVLVEFGAELSAVDQQGNTAMH--MCGHVDTTQFLIDCGLQSDICNSHGLTPYMLAVRR---GVKKQVLQLL 114
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A1S3IJM5_LINUN (protein fem-1 homolog A n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJM5_LINUN) HSP 1 Score: 64.7 bits (156), Expect = 1.080e-7 Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1 Query: 355 LSEADRHGQTPLHLACYKGSRVMTR-------------LLVEGGANLEAVDVNGNGVVHAAVCDSPA---VLAILIDHGADVTVANFDGLTPQRL 591
L + GQTPLHLAC K + + R LL+E GA+LE VDV GN +H A + P V+ +L++HGA + + N G TP +L
Sbjct: 312 LKPRGQKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQL 406
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A1S3IJB5_LINUN (protein fem-1 homolog C-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IJB5_LINUN) HSP 1 Score: 64.7 bits (156), Expect = 1.380e-7 Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 1 Query: 355 LSEADRHGQTPLHLACYKGSRVMTR-------------LLVEGGANLEAVDVNGNGVVHAAVCDSPA---VLAILIDHGADVTVANFDGLTPQRL 591
L + GQTPLHLAC K + + R LL+E GA+LE VDV GN +H A + P V+ +L++HGA + + N G TP +L
Sbjct: 488 LKPRGQKGQTPLHLACSKDTTTVGRYPVCSFPSAEVANLLMEVGASLEDVDVEGNTALHIAAANKPCKLDVMRVLLNHGAHLDMCNASGRTPMQL 582
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: C3XX62_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XX62_BRAFL) HSP 1 Score: 60.5 bits (145), Expect = 3.730e-7 Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 1 Query: 343 DARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVHAAVCDSPAVLAILIDHGADVTVANFDGLTPQRL 591
D ++ D G+TPLHLA +G+ + R+LVE GA L AVD GN +H +C LID G + N GLTP L
Sbjct: 19 DGHDPNQRDSRGRTPLHLAACRGAVDVMRVLVEFGAELSAVDQQGNTAMH--MCGHVDTTQFLIDCGLQSDICNSHGLTPYML 99
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: A0A3Q1HL91_ANATE (Nuclear factor NF-kappa-B p100 subunit-like n=9 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HL91_ANATE) HSP 1 Score: 63.2 bits (152), Expect = 4.990e-7 Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1 Query: 283 LHLAIFQGDTAKVEEVVARGD---ARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDV-NGNGVVHAAVCDSPAVLA--ILIDHGADVTVANFDGLTPQRLCEQYCPPRL 618
LHLA GD + + ++A + ++ D HG PLHLA + RLLVEGGAN++A + +GN +H AV +S +A ++ + ADV F G TP L P L
Sbjct: 567 LHLAALAGDNSMLRYLLAHLNECHGHLINSPDYHGLNPLHLAVRRDGERTLRLLVEGGANVDAAEQKSGNTALHLAVRESLFKVACTLITELKADVNAVTFGGNTPLHLAASLGSPSL 684
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: UPI000362F165 (ankyrin repeat domain-containing protein n=1 Tax=Lewinella cohaerens TaxID=70995 RepID=UPI000362F165) HSP 1 Score: 62.8 bits (151), Expect = 5.250e-7 Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 274 LQELHLAIFQGDTAKVEEVVARGDARALSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDVNGNGVVH-AAVCDSPAVLAILIDHGADVTVANFDG 573
L LH A+ Q ++ + ++A G A + G TPL AC K + RLL++ GANL A+D G+ V++ AA P VL +L++ G DV+V + G
Sbjct: 78 LSPLHYAVQQNNSEILAVLLAAGAAVDIPSGGELGATPLMWACAKEDAKVARLLLQNGANLNAIDRQGDPVINWAAYYGHPEVLKLLVEKGVDVSVQSKHG 178
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Match: UPI00125D3FEA (nuclear factor NF-kappa-B p100 subunit isoform X1 n=2 Tax=Sander lucioperca TaxID=283035 RepID=UPI00125D3FEA) HSP 1 Score: 62.4 bits (150), Expect = 8.780e-7 Identity = 44/118 (37.29%), Postives = 61/118 (51.69%), Query Frame = 1 Query: 283 LHLAIFQGDTAKVEEVVAR-GDARA--LSEADRHGQTPLHLACYKGSRVMTRLLVEGGANLEAVDV-NGNGVVHAAVCDSPAVLA--ILIDHGADVTVANFDGLTPQRLCEQYCPPRL 618
LHLA GDTA + ++A G+ A ++ D HG PLHLA + RLLVEGGA + A + +GN +H AV ++ +A ++ + ADV F G TP L P L
Sbjct: 575 LHLAALAGDTASLRPLLAHLGERHAHLVNTPDYHGLHPLHLAVRRDGERCLRLLVEGGAKINAPEQKSGNTALHLAVRENLFKVACTLITELKADVNACTFGGNTPLHLAASLGSPTL 692 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17762.1 >prot_E-siliculosus-1a_M_contig99.17762.1 ID=prot_E-siliculosus-1a_M_contig99.17762.1|Name=mRNA_E-siliculosus-1a_M_contig99.17762.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=286bp MAALSKDGGVAAVAAAAARTGASTPARRAAGAEEQPGVAAATPKKKRASLback to top mRNA from alignment at E-siliculosus-1a_M_contig99:223029..230486+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17762.1 ID=mRNA_E-siliculosus-1a_M_contig99.17762.1|Name=mRNA_E-siliculosus-1a_M_contig99.17762.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7458bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:223029..230486+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:223029..230486+ >mRNA_E-siliculosus-1a_M_contig99.17762.1 ID=mRNA_E-siliculosus-1a_M_contig99.17762.1|Name=mRNA_E-siliculosus-1a_M_contig99.17762.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1716bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:223029..230486+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |