mRNA_E-siliculosus-1a_M_contig99.17753.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig99.17753.1 vs. uniprot
Match: D7FI24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI24_ECTSI) HSP 1 Score: 1477 bits (3825), Expect = 0.000e+0 Identity = 1050/1407 (74.63%), Postives = 1067/1407 (75.84%), Query Frame = 1 Query: 172 MLIIDVQSRRGAVEEVYVRDGDNAFDLARGFIVRRVGHGLGVQHVRAVGVQIQAKVVETGYHVDVSGSCWVSEPTINPPAAAHQPNYFRDHPRSDSGSWEGSRPRQQHRDRGEARRVRGGRGVGTTSVAATESGTTDCLKRKTEHAGSNVHHTNGAASPQPQSITAVSVAHEAAGAEQEHAGRETRLHREEDDDPNDEDEKASFLKSRDDTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNGRRFEWRRRQWRQRRRCSWQDYXXXXXXXXXMRSASTSAGPMRFTDEDRDRFPSAASGWRSDPAASSNEWGVGFEGGGFPEGGDTDDERHAYHTARASWTRPRRARGGAGLGASSSGXXHRXXXXXXXXXRDGVATGVRHGEGFLGRPVASASASPRRVAGVAGETTRPDGRRRGDHEPATATTTPAGRRRSAGYRLSGRRIRRYGSGSEEESSGGWRSAPEVGHGGGSYRANRQGFGGGAVGGGAGWRSRGALGRRPASREAARQLRVSERMHRLGRVMAKRKEATRQRRDEVQRAREALACSGRLNLCSKTRELTDNQPKYVYRRPTGKTGASNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRLYSEWMASRKRNASVLAKAXXXXXXXXA-REDVSPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXXSTAVKPGGATGDQXXXXXXXXXXXXXXXXXSGSRTVGEDGVRRCGRQRPEMFRPTPVARPSGDGAVRARPTGELLFDNLYRNPPTPSRRRAKQILQADTRATCTFAPEINECSRRLAEAQEARRDLLDFVRAGSESDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSKVMVKSHRLHAEXXXXXXXXXXXRKELLSQSCPFTPDIGVSAAWPIQETTTEDFVRXXXXXXXXXXXXXXXXRYTLHEAPHASVDPATGRPFFSPMINKTWAGRRHXXXXXQSGVFSGWFSRHGVTKSTATXXXXT--AGRGAKRPGDKGKAGTDGRCFYHDDD-RPIHASLWERGLALERRREAGARSREEARKSVAAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEYARLPEGLDYDEAMESITTKINAIFDNDNDAWQEMTLEVAKADPSVLKPELVPVVTSALAGHGDETLSLLGFCELLDAAVENLASAGGPTAHLFAPGAGRSXXXXXXXXXXXXXXAAREDSAELKEMTFRPRLNSNSKAIARTMGRDGAKKKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSTRQGRNKSRGGVGGGGGTRNAPRYSNEIAADRAXXXXXXXXXXXXXXXXXGAAEVSEDREGGIPGAGALPERAES 4380
MLIIDVQSRRGAVEEVYVRDGDNAFDLARGFI IQAKVVETGYHVDVSGSCWVSEPTINPPA AHQPNYFRDHPRSDSGSWEGS PRQQHRDRG ARRVRGGRGVGTTS ATESGTTDCLK + EHAGSNVHHTNGAAS QP S A VAHEAAGAEQEHAGRETRL RE +ASFLKSRD TSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNGRRFEWRRRQW+QRRRCSWQDYXXXXXXXXX A RRRSAGYRL GR IRR GSGSEEESSGGWRSAPEVGHGGGSYRANRQGFGGGAVGG LGRRPASREAARQLRVSERMHRLGR MAKRK ACSGRLNLCSKTRELTDNQPKYVYRRPTG++GAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDRLYSEWMASRKRNAS+LAK XXXXXA RE+ SPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX SGSR VGEDGVRRCGR+RPEMFRPTPVARPSGDGAVRARP GELLFDNLYRNPPTPSRRRAKQ+LQADTRATCTFAPEINECSRRLAEAQEARRDLL+FVRAGSESDG XX ARSKV+VKSHRLHAE RKELLSQSCPFTPDIGVSAAWPIQETTTEDFVRXXXXXXXXXXXXXX RYTLH APHAS+DPATGRPFFSPMINKTWAGR+HXXXXX WFSRHGVT XXXX AGRGAKRPGDKGKAGTDGRCFYHDDD RPIHASLWERGLALERRREA ARSREEARKS AAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEYARLPEGLDYDEAMESIT+KINAIFDNDNDAWQEMTLEVAKADPSVLKPELVPVVTSALAGHG+ETLSLLGFCELLDAAVENLASAGGPTAHLFAPGAGRS XXXXXXXX AAREDSAELKEMTFRPRLNS+SKAIARTMGRDG KKKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSTRQGR+KSRGG RNAPRY NEIAADRAXXXXXXXXXXXXXXXXX AEVSEDREG IPGAGALPE ES
Sbjct: 1 MLIIDVQSRRGAVEEVYVRDGDNAFDLARGFI-------------------IQAKVVETGYHVDVSGSCWVSEPTINPPAPAHQPNYFRDHPRSDSGSWEGSGPRQQHRDRGGARRVRGGRGVGTTSATATESGTTDCLKGEAEHAGSNVHHTNGAASLQPLSTVAAGVAHEAAGAEQEHAGRETRLQREXXXXXXXXXXEASFLKSRDGTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGRRFEWRRRQWQQRRRCSWQDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------XXXXXXXAERRRSAGYRLRGRWIRRCGSGSEEESSGGWRSAPEVGHGGGSYRANRQGFGGGAVGGXXXXXXXXXLGRRPASREAARQLRVSERMHRLGRAMAKRKXXXXXXXXXXXXXXXXXACSGRLNLCSKTRELTDNQPKYVYRRPTGRSGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGAGDRLYSEWMASRKRNASLLAKTKAAXXXXXASRENASPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXDSSGSRRVGEDGVRRCGRRRPEMFRPTPVARPSGDGAVRARPKGELLFDNLYRNPPTPSRRRAKQVLQADTRATCTFAPEINECSRRLAEAQEARRDLLEFVRAGSESDGRGGGAEGKGGSKREDTEAAATRAGXXAGA---ARSKVIVKSHRLHAEHADNEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTTEDFVRXXXXXXXXXXXXXXAKRYTLHGAPHASIDPATGRPFFSPMINKTWAGRQHXXXXXXXXXXXXWFSRHGVTXXXXXXXXXXXXAGRGAKRPGDKGKAGTDGRCFYHDDDDRPIHASLWERGLALERRREADARSREEARKSAAAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEYARLPEGLDYDEAMESITSKINAIFDNDNDAWQEMTLEVAKADPSVLKPELVPVVTSALAGHGEETLSLLGFCELLDAAVENLASAGGPTAHLFAPGAGRSAAGAXXXXXXXXAKAAREDSAELKEMTFRPRLNSHSKAIARTMGRDGTKKKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSTRQGRSKSRGGAXXXXXARNAPRYPNEIAADRAXXXXXXXXXXXXXXXXXXXAEVSEDREGEIPGAGALPEGVES 1255
BLAST of mRNA_E-siliculosus-1a_M_contig99.17753.1 vs. uniprot
Match: A0A6H5JGR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR6_9PHAE) HSP 1 Score: 679 bits (1751), Expect = 8.190e-220 Identity = 579/972 (59.57%), Postives = 602/972 (61.93%), Query Frame = 1 Query: 277 VGHGLGVQHVRAVGVQIQAKVVETGYHVDVSGSCWVSEPTINPPAAAHQPNYFRDHPRSDSGSWEGSRPRQQHRDRGEARRVRGGRGVGTTSVAATESGTTDCLKRKTEHAGSNVHHTNGAASPQPQSIT--AVSVAHEAAGAEQEHAG-------RETRLHREEDDDPNDEDEKASFLKSRDDTSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNGRRFEWRRRQWRQRRRCSWQDYXXXXXXXXXMRSASTSAGPMRFTDEDRDRFPSAASGWRSDPAASSNEWGVGFEGGGFPEGGD---------------TDDERHAYHTARASWTRPRRARGGAGLGASSSGXXHRXXXXXXXXXRDGVATGVRHGEGFLGRPVASASASPRRVAGVAGETTRPDGRRRGDHEPATATTTPAGRRRSAGYRLSGRRIRRYGSGSEEESSGGWRSAPEVGHGGGSYRANRQGFGGGAVGGGAGWRSRGALGRRPASREAARQLRVSERMHRLGRVMAKRKEATRQRRDEVQRAREALACSGRLNLCSKTRELTDNQPKYVYRRPTGKTGASNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRLYSEWMASRKRNASVLAKAXXXXXXXXAREDVSPEGWTCPECGADNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAAXXXXXXXXXXXXXXXXXXSTAVKPGGATGDQXXXXXXXXXXXXXXXXXSGSRTVGEDGVRRCGRQRPEMFRPTPVARPSGDGAVRARPTGELLFDNLYRNPPTPSRRRAKQILQADTRATCTFAPEINECSRRLAEAQEARRDLLDFVRAGSESDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARSKVMVKSHRLHAEXXXXXXXXXXXRKELLSQSCPFTPDIGVSAAWPIQETTTEDFVRXXXXXXXXXXXXXXXXRYT 3120
+ HGLGVQHVRAVGVQIQAKV++TGYHVDVSGSCWVSEPTIN PA AHQPNYFRDH RSDSGSW+GS PRQQHRDRGEARRV GG GVGTTSV AT+SGTTDCLK + EHAGSNV HTNGAASPQPQ A VAHEAA RETRL R+EDDD N+E ASFLKSRDDTSR XX XXXXXXXXXXXXXXXX XXXXXXXXX T + R + R W + RR R R +GVRH EGFLGRPVASAS PRRV G +TT PDG R GDH PAT T TPA RRR AGYRLSGR +R GSGSE+ESSGGWRSAPEVGHGGGSYRANR+GFGGGAVGGGAGWRSRG LGRRPASREAARQLRVSERMHRLGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GDRLYSEWMA+RKRNAS+LAKA RED SPEGWTCPECGA NRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAA XXXXXXXXXXXXX STAVKPGGATGDQ XXX S SR VGEDGVRRCGR+RPEMFRPTPVARP G VRARP GE ATCTFAPEINE SRRLAEA+EARRDLLDFVRAGSESDG XXXXXXXXXXXX XXXXXXX ARSK+MVKS+RLHA+ RKELLSQSCPFTPDIGVSAAWPIQETT EDFVR RYT
Sbjct: 56 IRHGLGVQHVRAVGVQIQAKVIDTGYHVDVSGSCWVSEPTINHPAPAHQPNYFRDHQRSDSGSWQGSGPRQQHRDRGEARRVGGGPGVGTTSVGATDSGTTDCLKGEAEHAGSNVDHTNGAASPQPQFTRRMAAGVAHEAAXXXXXXXXXXXXXXXRETRLQRDEDDDENEE---ASFLKSRDDTSRHADRETCLHXXEVDDLDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRNGRR-FEWRRRQWRQRRRCRWQDDYSEEDD-----------DDMRSASTSGVRHVEGFLGRPVASAS--PRRVVG---DTTPPDGWRSGDHGPATTTATPAERRRRAGYRLSGRWVRPCGSGSEKESSGGWRSAPEVGHGGGSYRANREGFGGGAVGGGAGWRSRGVLGRRPASREAARQLRVSERMHRLGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDRLYSEWMATRKRNASLLAKAKSAAAE---REDASPEGWTCPECGAGNRAQDDTCQTFTGLAVAAQDLRPDTWCRESPEALGRVAATASXXXXXXXXXXXXXR-STAVKPGGATGDQRGPESRRRYGXXXS---SDSRRVGEDGVRRCGRRRPEMFRPTPVARPLDHGVVRARPKGE---------------------------ATCTFAPEINELSRRLAEAREARRDLLDFVRAGSESDGSGXXXXXXXXXXXXRKDTPAAXXXXXXXGA--ARSKIMVKSYRLHADHADIEQRRERRRKELLSQSCPFTPDIGVSAAWPIQETTKEDFVRRLHAEHAEQERRLQAKRYT 971
BLAST of mRNA_E-siliculosus-1a_M_contig99.17753.1 vs. uniprot
Match: A0A6H5JFG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG4_9PHAE) HSP 1 Score: 549 bits (1414), Expect = 1.870e-178 Identity = 341/410 (83.17%), Postives = 346/410 (84.39%), Query Frame = 1 Query: 3181 MINKTWAGRRHXXXXXQSGVFSGWFSRHGVTKSTATXXXXT-AGRGAKRPGDKGKAGTDGRCFYHDDDRPIHASLWERGLALERRREAGARSREEARKSVAAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEYARLPEGLDYDEAMESITTKINAIFDNDNDAWQEMTLEVAKADPSVLKPELVPVVTSALAGHGDETLSLLGFCELLDAAVENLASAGGPTAHLFAPGA---------GRSXXXXXXXXXXXXXXAAREDSAELKEMTFRPRLNSNSKAIARTMGRDGAKKKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSTRQGRNKSRGGVGGGGGTRNAPRYSNEIAADRAXXXXXXXXXXXXXXXXXGAAEVSEDREGGIPGAGALPERAES 4380
MINKTWAGRR XXXXX XXXX AGRGAKRPG KGK TDG CFYHDDDR IHASLWERGLALER+REA ARSREEARKS AAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEY+RLPEGLDYDEAMESIT KINAIFDNDNDAWQEMTLEVAK DPSVLKPELVPVVTSALAGHGD+TLSLLGFCELLDAAVENLASAGGPTAHLFAPG GRS XXXX AAREDSAELKEMTFRPRLNS SKAIARTMGRDG K KMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSS RQGR+KSRGGVGGGG TRNAPRY NEIAADRA XXXXXXXXXXXXXXX AAEVSEDREG +PGAGALPE ES
Sbjct: 1 MINKTWAGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGRGAKRPGGKGKVDTDGLCFYHDDDRSIHASLWERGLALERKREADARSREEARKSAAAAGHVGGRSAELIRAMRVRSLVQTYRTLLASVEYSRLPEGLDYDEAMESITAKINAIFDNDNDAWQEMTLEVAKVDPSVLKPELVPVVTSALAGHGDDTLSLLGFCELLDAAVENLASAGGPTAHLFAPGENEKECGMKRGRSAAGTGRAAAXXXXKAAREDSAELKEMTFRPRLNSKSKAIARTMGRDGTKTKMEDVRRRENIKSERRRSLLLRQQTDLFSKQHPFTPTFFSSARQGRSKSRGGVGGGG-TRNAPRYPNEIAADRAAAXXXXXXXXXXXXXXX-AAEVSEDREGAMPGAGALPEGVES 408 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig99.17753.1 >prot_E-siliculosus-1a_M_contig99.17753.1 ID=prot_E-siliculosus-1a_M_contig99.17753.1|Name=mRNA_E-siliculosus-1a_M_contig99.17753.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=1412bp MSHQRRRLMLIIDVQSRRGAVEEVYVRDGDNAFDLARGFIVRRVGHGLGVback to top mRNA from alignment at E-siliculosus-1a_M_contig99:119812..131950+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig99.17753.1 ID=mRNA_E-siliculosus-1a_M_contig99.17753.1|Name=mRNA_E-siliculosus-1a_M_contig99.17753.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=12139bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:119812..131950+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:119812..131950+ >mRNA_E-siliculosus-1a_M_contig99.17753.1 ID=mRNA_E-siliculosus-1a_M_contig99.17753.1|Name=mRNA_E-siliculosus-1a_M_contig99.17753.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=8472bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:119812..131950+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |