mRNA_E-siliculosus-1a_M_contig99.17741.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig99.17741.1
Unique NamemRNA_E-siliculosus-1a_M_contig99.17741.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig99.17741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig99contigE-siliculosus-1a_M_contig99:8324..13730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size153
Model size157
Exons2
Hectar predicted targeting categoryno signal peptide or anchor
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936569.1543837-CDS-E-siliculosus-1a_M_contig99:8325..84011622936569.1543837-CDS-E-siliculosus-1a_M_contig99:8325..8401Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 8326..8401 -
1696251135.5349703-CDS-E-siliculosus-1a_M_contig99:8325..84011696251135.5349703-CDS-E-siliculosus-1a_M_contig99:8325..8401Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 8326..8401 -
1622936569.1881385-CDS-E-siliculosus-1a_M_contig99:13653..137301622936569.1881385-CDS-E-siliculosus-1a_M_contig99:13653..13730Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 13654..13730 -
1696251135.549354-CDS-E-siliculosus-1a_M_contig99:13653..137301696251135.549354-CDS-E-siliculosus-1a_M_contig99:13653..13730Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig99 13654..13730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig99.17741.1prot_E-siliculosus-1a_M_contig99.17741.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig99 8326..13730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig99.17741.1

>prot_E-siliculosus-1a_M_contig99.17741.1 ID=prot_E-siliculosus-1a_M_contig99.17741.1|Name=mRNA_E-siliculosus-1a_M_contig99.17741.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=51bp
HTTTEASGGAAGSVTRVLGGLCAKGRCRTRRNKNVRKFREHTRCSLQGAW
N
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mRNA from alignment at E-siliculosus-1a_M_contig99:8324..13730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig99.17741.1 ID=mRNA_E-siliculosus-1a_M_contig99.17741.1|Name=mRNA_E-siliculosus-1a_M_contig99.17741.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=5407bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:8324..13730- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACACGACAACGGAAGCGAGTGGCGGAGCAGCGGGATCGGTTACCAGGGT
GCTCGGGGGACTCTGTGCGAAAGGAAGGTGTGTTTACGAGTGTCTGTGCT
TGTAGACGTGTGCACAGGAAGACGTGTGCGCGCGAGATATGTGTGCGGCA
CAGCAGCTGCCGCACCGCGCGCATTCTGGGTTTTTGGTCACGCTCGTATG
TGTCACAAAACTCGCCCGCGCGCTGCGTGAACGCTGGCAAATCGTCCCTG
TGGGTGTGCCGGTGCCTTCTAGTGCAGAAAGTTTTATTTTAGACGCGCCT
ATCGTGTTTGCTGTTTTCTCCCCCCTGCGTGCGCACGTGACGTATTGTAC
GTTGAATAACACGGGGTGTAAAATATCTCGTTCCCGCCTTCACCCCACCC
CCCCCCCCCAAAAACAAATTATGTGGGTTTCACGCGTACCCACTGGTCAA
ATAATACGGATTGGTGGGTATGGGGGTGTTCTGCCTGTGTGTCGGCAGCA
AATCACTTGAAATTAGAGGCCCCCCTGCCGCGCGTACCACGTTTAGGCCC
GTATCTCGGCCCCAAATTATGGGTTGACCATAAAAAAAAATACAGCAGTG
CGCCTGACCTGGCGGAACAACATACTTAAATTACAAGTTAATCCTTGAAG
ATCCTGATTTTTAAAGCTCGAAACAAGCTGTACAGCAGTGTTTACGGGTA
AAGTGTAAGCATAACTCTGCACCATTCTAGTGTTCGGCCTTGAAATTTTG
CACGATCGTGCCCCTGACTCGTGCGCCTGTGCACAAAAAATCAGAAATGA
AATCGGAGCATGTGGAGGCGCTGGCGGCCGATTTCAGTGCTGTGCAGCAG
CAGATAACACCTTTCGCTGCCGCAGTCGCCCCTGTTATTCTTTTTTCGCC
TTGATATTTTGGCACGCTTGCCATCTGTTCACAGGACCACCGTTGTGTGT
GTTTATGATGGAAAATATGTACAGCTGCGCAAGCGTGTCAACCGTTTTTA
TAAGGGAAAACTGGGCAAACCCACCCCGAAGTCTAGTTTCTATCGTGGCC
CGCATACTTGGTGAGACCCATATCCACATGCAGCAGAGTCATATCGGGCC
ATTTGGATATAGCGAGGTAAACCCCCCGCCCTCCGCGCCGAGCGCACGGC
GTCGCCACTTCCGCGTTTGGCACCAGTTGTCGTTGAAACATAATTATTAT
TAATTTGCAAATCACACTCTCACGTGTCCATCTACGAACTTCTTAAAGTT
CCTATCGTCGCCGTCTTCAAAGAACGTCCTGTCCCACATGAACCATTTCT
CGCCCTCTTCGAGCTGACCAGCTATACGCTTACTTACTAGATGACGAAAC
AGCAACCTAGTTTTGCCTGCGTGCTTGAGAAGGGATGCGCGGATTTCCGC
AATAAACTCCATCCTCCGGGCGCCCAGTTTCTTGGTGCTTGGCTTGGCGC
CCTTCTCTGTCGTTTCTCCCAAGCAAGCCGAGTTGACTACGCCACCTAGC
ACCGACTTGCCGATTATGTGGGCCTGACCGTATCCAGCGGCTGACATGTA
GCTAGTCCTTAACCTAGCACTCGACACCTGCAAAAAACTACTGAATTCAT
CCATGTTTGACGGATCGACCTGGCCCGAATTCAGAGCGGCCGTGGCCCAA
AACGTCCGACACGTGTGAATACAGAAGTTGGGAAGGCCTAGCCAGTGCGC
CCCAATCTTTTTGGCACGTGACGCAATGTCAGGCTGGGCCCAAGCCTGCC
CCACGCTCACGCTTGCCCCCCCTTACCCCGTGCACCCGTTTTGCCTCCAT
GGCGCGGCGTCACCGCGCCCTCGCACCATCACACCCCTCCCACGAAACGC
AGAAACACCCTTTCATGTTCATCCTTCCAGAAAGTATTCTCCTTCCGAAA
CCATTTTTCACTCTCTCCGAGCTGACCAACCTTACGCTTCCTCACTAGAT
CCTGGAACATGTGTTTGGCATCGCCCGAGTACTTGAGCAGAGATGCGCGG
ATGTCCGCAAGGAACTCCAGTCTGATCTTACGCAGCTTCGGCCCTTGCGG
CCCATCGCCATTCTCCGCAATTTCCACATGACAAGCCGAGTTGACTACGC
CACCTAGCACGACGTTGCCTATTGTGTGGGCAGCTGTGTTTGCAGAGGCA
GCTGCATAGCTACTCCTTAACGTGGCACTCGACACCTGGAGATAGGAGCT
AAAGTCGTCGATATTACTGCTATTGACTTGGCCCGAATTCAGGGCGTGTG
TGGCCCAAAACGTACGGCACACATGGGGAGAGAAGTTTTCAATTCCTAGC
CAGTACGCCCCAATCTTTTTGAAACGCGACCGAGTGTCGTTTGGGGTCCA
CCCTTCCCCCTTCGAATTGACAAACAGCCTCCTGTTGCCGTCGCGCATGT
CTACGTCGCAGAAGCGGTGGCCCACACAGGCTACAAAATGTATCATCATG
CTTTGGTCTGCTGACATTTCAAAGTGACTAACGGGAAGAGCCCCACTCGA
CGCTGAGGCGGTAGCCGTCTTCCAAGTTCGGTCTTTGAAAGAGTGCCTGA
AGTGGGTGCCGTCCGGAACAAGAGCATACTCGTTCACCGTTGCCTCGCGC
ATGACCTGGGATCTCTGAAAACAGTTGCTTAGCGCGAGTAAGACGCACAG
ATTGGCTACGTCGGAATATAGCACACCCTTATTCTTAGCGTGCTCGTACA
GGAGCTCGGCCTCCTGATTGGAAATTTTAAGAAACGCGGAGGGGTGTTCC
ATGCTTTCCCCGAGTTCCTCACCGATCAGGCTCTTCAGGGGGTGCCAAAC
GCCGAAGCAGACCCCTTTGAGCATGTCGTACATCATCTCCACCGCCTTGG
GGTCCGTGGGATCCAACATACGCCCGCCATCCACCTTCTTGTTGAGACCG
GCGGGGTCCAGGTTGGAGCTGACGGTGTTTGCCATTTTGAGCCTTTTCCT
CGTTTTCCAAAGCTGGCTGTCGAAGTGCGCCATGATCTCCGTTAGTTTCG
CGCCGACACTAGCGTCGAAGAGCGTTGGGCCGCCCTGCGGTGTGTTGCAA
GCAGCCATCGCCGCGACGCCTGCTCTCTCTCCATACGTCAAATGTATGGA
ACCCAACACGGAGCCGTCCATGCGGCCGACAGAGTCCACGGGTCGCTGTC
GGATTATGTCCAGACTCCCAACCACAGGTCCGCACTCGATCCCGTACTTT
GTTTTTTCTGTGTACGTCCGAAACAGTGTAGCTATCCTCTCGGCGTCACC
CGGGGCCGATTGGGTCGCCTTAAAAAGACCGTACGCGTCTCCTACGTGGA
ACCCCTCAATGTACTTGTCTTGGCACGCCCGCTCCAACATTATGTAGGCT
ATGTTTCTGTGCGGTACGTTTATCGCACGAAACACGCCCCTCCAGTCTGT
CTCCCAGCCGCGGATAGCGCCGTCCAAGTGACAGGGGGGGCAAAGCCACC
TCTCCTCGAGCACGCGACGCTCCACCACGTTCAGGGGCAAGACGACCGAT
TCGAAAGCTGTGGGGCGACCAAGAATAACCACCGCGAACCACATAAGCCC
GATTGCAGCGGAAGATGTTCCATACACGCTCGAAGAGTTGGTCTCCCCTC
GCTTCCCAGATATTGCGGCAAAATCTCGCTGCAGGAAGAACCGCTGCCTC
GAATCGTCGTCGTCGAAATCCATGTTCATGAACTGTAGTATACTCTTCGA
TTTGTCCACAGAGTACGGGAGGCCGTGAAACACAGAATTAGCCGAGCCTA
CCCGTTGGAGTCTTGTGAGGGCTTCTCGGCGCTGCTCTAGTTGCTTCCTC
CCCTCGGGCGTCGCGCGGTCGATGTCTCTGTAGTGGTGGCTCGCCTTGTT
CAGTTTGATTCGATTTTCGAGCAGGCTCGGGAAGAGCTGGGAGTAGACGT
GAAAACCGATCAGGGTCAGGTTGTCTCTCAGAGACTCTTGCCACGCGAGC
TTCTCGGCTTGAGGTAACCGATCGTATGGAGTGCCACTAAAATTTCTGGC
GCCGTAGAACTGACGCACCTGGTCGTCGGTGGGTGCAAGAAATATTTTTT
TCGGCGAGACGGGACACTTGAAGCTGGTGTTCTTCTTGGTCGCGCGCTCG
ACCTCGTTTGCGTTGAAATTCGGTTTTTCCAGGGTGGTGATTTGTTTCTT
CACCTTCGAGATACTTGAAACTCTAATGCGCTTGGGTGCGGTGGAAACAG
GAGCCATGGTTGAGGTCGGGGGAGTGAGCTTGGATGGGGCATGAAGCCAC
ACAAAAGTTGTTCGTTCAGAATGCAGGGGGGCCACGCGTACGAGACCGAT
TTTGCACGAGGGGTGTAGGGGTTCGAGGTGTGTTCACAGACAAAGTTGTT
GGTTTTAATTTACTCTCGTGAAGCGCACTACCCACCCCAGTCCCTTCAAA
CACTTGCATAAAATCACGGATTACGAGATGTTGCACGAAGAGTTTATCTC
ATGCACGATCGGTGAACGACCACTATACAGCTGGTGGGACCAGCACCAGC
TAATAAGTCGCCTTGAGCGCGCGAATCATGAAACTGCGGAAGAGGAGGAG
ACTATTTGGGCGGTGGTAGTACAATACCAAGCGTTCTATCTCGCCGACTG
GATGGTCGCCGATGGCTCCGATGCTACGGGACGTCCTTGGGAGTCGTGTA
TCCCCTATGACGCTTCCAAGTGGAACGAATGGATAGAATCCAGGCTGATG
ATATCTTCTTCAGGTGTTTCCGACAACTATCGCAAGGAAACCATTAAAGA
GATGGTCAAGCGCAAGTACATAACAATTCCCCTGAATTCAGGTTTACCGC
TGTGTTACTGGTTGAGTGAGGGATACGAACGTGAGGATTTCTGTGATGTG
TACGGCTGCATAGTATACTTTCGTGATGCTTTCTCCTCTGAAGATTACAC
GGAAGAGTGGGAGATTTCATGTTATAAAGAGGAGTGTCTCGATAGCTACA
TGGACGAATGTATAAAGGCTGGTACCGCGCTCTACAGTCTTCCGTGCGTT
TTCTTGTGCCTCCTGAGATGAGAAGCCTGTGTGAATGCTTTCCTGCACTG
CCCGATGTCGCACACGTGTGGTTTTTCTCCCCTATGTGTCATCTCATGCA
TTTTCATGGAGTGAGATCTGTAGGCTGTGTACGAGCAGTTGCCCAAATAA
CACGAGTACGGACGTACTTCCCAGCTTTGGACGGGGGTCATCACTTGTCC
CAGAATGCGCGCCGCCTCCTAGTTGTGACACAAGATTTTTTTTTCGCCGT
ATCTGACGCTTCCATCCCGGGTGCCCCAGCGCCCCCTCCCCCCTCTCCTT
TCGCATTTTTTGAGCTAAACCTGCCGCAGGTGTCGCACGAGACGCAACAA
GAACGTGAGAAAGTTCCGGGAGCATACTAGATGCAGCTTACAGGGGGCGT
GGAACCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig99:8324..13730-

>mRNA_E-siliculosus-1a_M_contig99.17741.1 ID=mRNA_E-siliculosus-1a_M_contig99.17741.1|Name=mRNA_E-siliculosus-1a_M_contig99.17741.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=306bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig99:8324..13730- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CACACGACAACGGAAGCGAGTGGCGGAGCAGCGGGATCGGTTACCAGGGT
GCTCGGGGGACTCTGTGCGAAAGGAAGCACACGACAACGGAAGCGAGTGG
CGGAGCAGCGGGATCGGTTACCAGGGTGCTCGGGGGACTCTGTGCGAAAG
GAAGGTGTCGCACGAGACGCAACAAGAACGTGAGAAAGTTCCGGGAGCAT
ACTAGATGCAGCTTACAGGGGGCGTGGAACGTGTCGCACGAGACGCAACA
AGAACGTGAGAAAGTTCCGGGAGCATACTAGATGCAGCTTACAGGGGGCG
TGGAAC
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