mRNA_E-siliculosus-1a_M_contig98.17738.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17738.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17738.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: D1J7C3_ECTSI (Probable RuBisCO transcriptional regulator n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7C3_ECTSI)

HSP 1 Score: 514 bits (1324), Expect = 5.640e-183
Identity = 262/282 (92.91%), Postives = 276/282 (97.87%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTKLNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K FSFTLRQLKVIQTIKTEGNVKIT+KHLKLSQPAVSLQLKQLQQ+IYSKILIRKKNEIYFTPEGELVLDYANK+LRLCEEADKAILYLK IKKFTLIIGSNKMLGKYLSSKII+IFCRRYSYSHVKL+ICCDKSLSW+IINGR+D+GILPDNEVPTNLYNLLHRTSYFEEQ+ LVIPISYE+QLTNDLTKLNLVTIKPHLQSR+F+DNILNRFNLELKQLKIRLALNSSEAIKRSVYN LG+AFLS IYVKEEFYKKRLNSITLNLKNTNKRFTL INIK
Sbjct:    1 MKDFSFTLRQLKVIQTIKTEGNVKITAKHLKLSQPAVSLQLKQLQQDIYSKILIRKKNEIYFTPEGELVLDYANKVLRLCEEADKAILYLKTIKKFTLIIGSNKMLGKYLSSKIIEIFCRRYSYSHVKLKICCDKSLSWNIINGRVDIGILPDNEVPTNLYNLLHRTSYFEEQLALVIPISYEYQLTNDLTKLNLVTIKPHLQSRHFIDNILNRFNLELKQLKIRLALNSSEAIKRSVYNELGVAFLSPIYVKEEFYKKRLNSITLNLKNTNKRFTLAINIK 282          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A5A4MHG3_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MHG3_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 2.160e-101
Identity = 150/287 (52.26%), Postives = 217/287 (75.61%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLT-----KLNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K FSF L QLK+IQ +K EGN+K  +K L LSQPA+SLQ+K L++N+YSKILIRKK +IYFTPEGEL+LDYANKIL LCEE DKA+L LK  KKF+L +GS+K +G+Y+S K+ID+F +RY Y+HV+L+I   +++SW+IING+ID+GI+ DN VP N+YN L  T YF+++MVL++P +Y+ +   +++      LN +  K +   R  +DNIL +F+   KQLKI L LNS  A+KR+V +GLG++FLST+ VKEE Y K ++S+ +   + + +FT+++++K
Sbjct:    1 MKNFSFNLEQLKIIQAVKNEGNLKTVAKFLYLSQPALSLQIKNLEENLYSKILIRKKKQIYFTPEGELILDYANKILELCEEVDKAVLCLKNFKKFSLRVGSDKSIGEYISIKLIDLFSKRYPYTHVQLKISSTQNISWEIINGKIDIGIVQDNMVPRNIYNSLSVTPYFQDKMVLILPKTYKQKFPTNISGKNFRDLNFIATKSYFAERKPIDNILKKFSTPQKQLKINLELNSINALKRAVGDGLGVSFLSTMLVKEELYAKSIHSLRIEGIDNHNQFTIIVSLK 287          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A1I9LVC7_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVC7_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 2.410e-100
Identity = 159/287 (55.40%), Postives = 217/287 (75.61%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTN----DLTKLNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITL-NLKNTNKRFTLVINIK 849
            ++  SF L+QLK+IQ IKTE N+ +T+K L LSQ ++  Q+K L+QN YSKILIRKKN++Y T EGEL+LDYA KIL LC E DKAILYLKKIKKF+L IGS K +GK  S K+ID+FC+RY Y++++LQI   + +SWDI+NGRIDMGI+  +EVP NLY+  + T YF+E+MVL++P S +   TN    +L KLN +T+K +   R  M+ I  R N+ LK+LKI+L LNS EAIKRSV +GLG+AFLST  +K+E Y K  +S+++ ++ NTNK+FT+++N+K
Sbjct:    1 MEDLSFNLKQLKIIQRIKTEVNINLTAKKLYLSQSSLIAQIKNLEQNTYSKILIRKKNQLYLTNEGELILDYAKKILALCTETDKAILYLKKIKKFSLKIGSTKTIGKSFSLKLIDLFCKRYYYTNIQLQIYFTEKISWDILNGRIDMGIVFHDEVPKNLYSHFYMTPYFQEKMVLLLPKSPKWA-TNINKFNLDKLNFITLKHYFPERKLMEKIAKRLNINLKELKIKLELNSIEAIKRSVKHGLGVAFLSTTVIKDELYSKFFHSVSIEDIINTNKQFTIIVNMK 286          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A8F0F9M1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9M1_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 1.890e-99
Identity = 149/287 (51.92%), Postives = 218/287 (75.96%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTK-----LNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K   F+L QL+ IQTIK EG VK  +K L LSQPA+SLQ+K+L+  I S IL RKK +IYFT  GEL+LDYA+KIL LCEEADKAILY K +K+ +L IGSN  +GKY+  KII++FC+RYSY+H+KL+I    +++WDIING+ID+GI+ + E+P  LY+ L+ T +F E++VL++P SY+ + + ++TK     LN +T+KPHL+ R  MD++L R+ ++ KQLKI+L LNS +A+KR+V  GLG++F+ST+ +++E Y KRL S+T+N +  ++R  L++N+K
Sbjct:    1 MKYLPFSLEQLRTIQTIKNEGTVKQAAKKLYLSQPALSLQIKKLESGIKSPILDRKKRKIYFTRTGELILDYADKILNLCEEADKAILYFKNLKRISLNIGSNYTIGKYILPKIINLFCKRYSYAHIKLEISDTNTIAWDIINGKIDIGIVIEEELPKELYSSLYGTPFFLEEIVLILPKSYKLKGSRNITKTNLYNLNFITLKPHLRRRKLMDDLLERYQIDTKQLKIKLQLNSIQAVKRAVQAGLGVSFVSTLMIQDELYSKRLTSVTVNSRKIHERVRLIVNLK 287          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A0R6LUS1_UNDPI (Probable RuBisCO transcriptional regulator n=29 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUS1_UNDPI)

HSP 1 Score: 302 bits (773), Expect = 4.060e-99
Identity = 150/287 (52.26%), Postives = 217/287 (75.61%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYE----HQLTND-LTKLNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K F F+L QL++IQ IK E  +K  +K L LSQPA+SLQ+++L+  I S IL R+K +IYFT  GEL+LDYA++ILRLCEEADKAI+YLKK+K+ +L IGSN+++G Y+  KIID+FCRRYSY HVKL+I     +SW+I+NG++D+GI+ + E+P  LY+ L+ T YF+E++VL++P S++    + +T++ L  L+ +T+KP    R  MDN+L +FN+E  +LKI+L LNS EAIKR V  GLG++F+S + VK+E Y  RLNS+ +N +N +KR TLV+N+K
Sbjct:    1 MKYFPFSLEQLRIIQAIKNEATIKQAAKRLYLSQPALSLQIQKLEYEIDSPILDRRKKQIYFTFTGELILDYADRILRLCEEADKAIVYLKKLKRISLTIGSNEIVGTYILPKIIDLFCRRYSYIHVKLEIDSTNCISWNIVNGKVDIGIVEEEEIPKELYSSLYSTPYFQEEIVLILPKSHKFKDVYSITSEKLYNLDFITLKPDFIGRKLMDNVLKKFNIESDKLKIKLELNSIEAIKRGVQAGLGVSFVSILMVKDELYSSRLNSVIINNRNISKRLTLVVNLK 287          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A6B7EV91_9PHAE (Putative RuBisCO transcriptional regulator n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EV91_9PHAE)

HSP 1 Score: 298 bits (764), Expect = 9.680e-98
Identity = 154/289 (53.29%), Postives = 215/289 (74.39%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNV--KITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPI----SYEHQLTND-LTKLNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K F F+L+QLKV+Q IK EGN+  KI SK+L LSQP +S ++K  Q N YSKIL+RKKN+IYFT EGELVLDYANKIL+LC+EAD AI + KK+K+F L IGSNK +GK +  K+I++FC+RY Y+HV+LQI C KSLSWD++NG+ID+GI+ + EVP NLY  L+ T YFEE++VL+I       Y++++ ++ L +LN +T+KP  Q R FMD  L  FN+ LK+L I L LNS++AI+ +V  G G++FL ++ VK   Y K+L S+ ++  N +K+F L +N+K
Sbjct:    1 MKYFPFSLKQLKVLQAIKNEGNINIKIASKNLYLSQPTLSSKIKIFQHNPYSKILVRKKNQIYFTSEGELVLDYANKILKLCKEADNAIAFFKKLKRFRLKIGSNKTIGKNILLKLINLFCKRYPYAHVQLQIGCTKSLSWDLVNGKIDIGIVQEEEVPKNLYYSLYFTPYFEEKLVLIIAKFQKQKYKNRMNSENLYQLNFITLKPGFQERKFMDTNLKNFNVNLKELNIILELNSTQAIENAVRAGFGVSFLPSMVVKHNIYSKQLQSLLIDGLNNSKKFLLGVNLK 289          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A6B7IJB9_9PHAE (Probable RuBisCO transcriptional regulator n=4 Tax=Scytosiphon TaxID=27966 RepID=A0A6B7IJB9_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 3.780e-97
Identity = 145/287 (50.52%), Postives = 219/287 (76.31%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTKLNL-----VTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K FSF L QLK++QT+K EGN+   +K L LSQPA+SLQ+K L++N+YSKIL RKK +IYFTPEGEL+LDYAN IL+LCEE D+A+LYLKK ++F+L +GS+K++G+ +S K+ID+F +RY Y  V+L+I   +S+SWDI+NG+ID+GI+ D+ VPTN+Y+ L  T YF++++VLV   +Y+ +   ++++ NL     +  K HL+ R  +D IL RF+   KQLKI L LNS +++KR+V +GLG++FLST+ ++EE Y KR++S+ +   +  K+FT+++N+K
Sbjct:    1 MKNFSFNLEQLKILQTLKNEGNLTTAAKILYLSQPALSLQIKSLEKNLYSKILRRKKKQIYFTPEGELILDYANNILQLCEEVDRAVLYLKKFRRFSLRVGSDKIIGESISLKLIDLFSKRYPYVVVQLKISSTQSISWDIVNGKIDIGIVQDDMVPTNIYSSLSITPYFQDKIVLVFAKTYQQKFPTNISEKNLSNLTFIATKSHLEEREPVDQILKRFSTHEKQLKINLELNSVKSLKRAVEDGLGVSFLSTMLIREELYSKRIHSLHVEGISNYKQFTIILNLK 287          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A8F0F6V8_AKKLU (Probable RuBisCO transcriptional regulator n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6V8_AKKLU)

HSP 1 Score: 283 bits (724), Expect = 1.070e-91
Identity = 141/287 (49.13%), Postives = 209/287 (72.82%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTK-----LNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K F F L QL++IQ IKTE  +K  +  L LSQPA+SLQ+++L+  I S IL R K +IY T  GEL+LDYA++IL LCEEADKAI+YLKK+K+ +L IG+N+ +G Y+  KII++FC+RY Y+ +KL+I C   +SW+I+NG+ID+GI+ ++E+P  LYN L    YF+E++VL++P  +E +   ++T+     LN + +KP+   R  MD+IL +FN++ ++LKI+L LNS EAIKRSV  GLG++F+S + V++E Y KRL+S  +N  + NKR TL++N K
Sbjct:    1 MKYFPFNLEQLRIIQAIKTEATIKQAATKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILSLCEEADKAIIYLKKLKRISLTIGTNETVGTYILPKIINLFCKRYPYTRIKLEIHCTNCISWNIVNGKIDLGIVEEDEIPKELYNSLSSKPYFQEEIVLILPKYHELKNVRNITRENLYNLNFIALKPYFIGRKLMDDILKKFNIDSEKLKIKLELNSVEAIKRSVQAGLGVSFVSILIVRDELYSKRLHSTLVNNISINKRLTLIVNPK 287          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A344PFD9_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFD9_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 4.450e-91
Identity = 147/288 (51.04%), Postives = 212/288 (73.61%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTK-----LNLVTIKPHLQSRNFMDNILNRFN-LELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K FSFTL QLK+IQT+K +GN+   +K L LSQPA+SLQ+K L++N+ +KILIRK  E+YFT EGEL+L+YA KIL+LCEE D AIL LKK KKF+L IGS+K +G+ +  K+ID+F +RYSY  ++L+I   +++SW I+NG++D+GI+ D+ VP NL N L  T YF++QMVL++P  YE +   ++++     LN +  KP+LQ R  +D IL  F+ +  KQLKI L LNS +A+KR+V NGLG++FLST+ VKEE Y K L+ + +   +  K+FT+++N+K
Sbjct:    1 MKKFSFTLEQLKIIQTLKNQGNLTTAAKFLYLSQPALSLQIKTLEKNLDAKILIRKNKELYFTSEGELILNYALKILKLCEEVDSAILRLKKFKKFSLRIGSDKSIGESILLKLIDLFSKRYSYVLIELKISSTQNVSWGIVNGKLDIGIVQDDMVPRNLCNSLSLTPYFQDQMVLILPKVYEQKFPTNISEKNLQHLNFIVTKPYLQEREPVDKILKIFSSIYQKQLKINLELNSVKALKRAVKNGLGVSFLSTMLVKEELYSKSLHLLRVEGIDNYKQFTIIVNLK 288          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Match: A0A8F0F7X1_9PHAE (Probable RuBisCO transcriptional regulator n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0F7X1_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 2.460e-90
Identity = 139/287 (48.43%), Postives = 206/287 (71.78%), Query Frame = 1
Query:    4 VKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIYSKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLIIGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMGILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTK-----LNLVTIKPHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLSTIYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK 849
            +K F F+L QL+++Q +K E  +K  +K L LSQPA+SLQ+++L+  I S IL R K +IY T  GEL+LDYA++IL LCEEADKAI+YLKK+K+ +L IG+N+ +G Y+  KII++FC RY Y+ +KL+I C   +SW+I+NG+ID+GI+ ++E+P  LYN L    YF+E+MVL++P  +E +   ++++     LN +T+KPH   R  MD+ L +FN+   +LKI+L LNS EAIKR+V  GLG++F+S + VK+E Y KRL+   +N  + NKR TL++N K
Sbjct:    1 MKYFPFSLEQLRIVQAVKNEATIKQAAKKLYLSQPALSLQIQKLEYEIDSPILDRNKKQIYLTLTGELLLDYADRILNLCEEADKAIIYLKKLKRVSLTIGTNETVGTYILPKIINLFCTRYPYTRIKLEINCANCISWNIVNGKIDLGIVEEDEIPKELYNSLSCRPYFQEEMVLILPKYHELKDVRNISREKLYNLNFITLKPHYVGRKLMDDTLQKFNINSDKLKIKLELNSVEAIKRAVQAGLGVSFISILMVKDELYSKRLHCTLVNNISINKRLTLIVNPK 287          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7C3_ECTSI5.640e-18392.91Probable RuBisCO transcriptional regulator n=2 Tax... [more]
A0A5A4MHG3_9PHAE2.160e-10152.26Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A1I9LVC7_9PHAE2.410e-10055.40Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A8F0F9M1_9PHAE1.890e-9951.92Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A0R6LUS1_UNDPI4.060e-9952.26Probable RuBisCO transcriptional regulator n=29 Ta... [more]
A0A6B7EV91_9PHAE9.680e-9853.29Putative RuBisCO transcriptional regulator n=1 Tax... [more]
A0A6B7IJB9_9PHAE3.780e-9750.52Probable RuBisCO transcriptional regulator n=4 Tax... [more]
A0A8F0F6V8_AKKLU1.070e-9149.13Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A344PFD9_9PHAE4.450e-9151.04Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A8F0F7X1_9PHAE2.460e-9048.43Probable RuBisCO transcriptional regulator n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:653600..654448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size849
Model size849
Exons1
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.K
EggNOG OGs2S17Z@2759,COG0583@1
EggNOG free text desc.DNA-binding transcription factor activity
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Preferred namerbcR
Seed eggNOG ortholog2880.D1J7C3
Seed ortholog evalue1.3e-143
Seed ortholog score515.8
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936569.0086186-CDS-E-siliculosus-1a_M_contig98:653599..6544481622936569.0086186-CDS-E-siliculosus-1a_M_contig98:653599..654448Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 653600..654448 +
1696251135.5109262-CDS-E-siliculosus-1a_M_contig98:653599..6544481696251135.5109262-CDS-E-siliculosus-1a_M_contig98:653599..654448Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 653600..654448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17738.1prot_E-siliculosus-1a_M_contig98.17738.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 653600..654448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17738.1

>prot_E-siliculosus-1a_M_contig98.17738.1 ID=prot_E-siliculosus-1a_M_contig98.17738.1|Name=mRNA_E-siliculosus-1a_M_contig98.17738.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=283bp
KVKGFSFTLRQLKVIQTIKTEGNVKITSKHLKLSQPAVSLQLKQLQQNIY
SKILIRKKNEIYFTPEGELVLDYANKILRLCEEADKAILYLKKIKKFTLI
IGSNKMLGKYLSSKIIDIFCRRYSYSHVKLQICCDKSLSWDIINGRIDMG
ILPDNEVPTNLYNLLHRTSYFEEQMVLVIPISYEHQLTNDLTKLNLVTIK
PHLQSRNFMDNILNRFNLELKQLKIRLALNSSEAIKRSVYNGLGMAFLST
IYVKEEFYKKRLNSITLNLKNTNKRFTLVINIK
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mRNA from alignment at E-siliculosus-1a_M_contig98:653600..654448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17738.1 ID=mRNA_E-siliculosus-1a_M_contig98.17738.1|Name=mRNA_E-siliculosus-1a_M_contig98.17738.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=849bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:653600..654448+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAGTGAAAGGTTTTTCATTCACCCTAAGGCAATTAAAAGTTATTCAAAC AATAAAAACTGAAGGAAATGTAAAAATTACATCAAAACACTTAAAGTTAT CCCAACCAGCCGTTAGCTTACAGCTTAAACAATTACAACAAAATATTTAT TCCAAAATTTTAATACGAAAGAAAAATGAAATTTATTTTACTCCAGAAGG AGAATTAGTTTTAGATTATGCTAATAAGATTTTAAGATTATGCGAAGAAG CTGATAAGGCTATTCTATATTTAAAAAAGATTAAAAAATTTACTCTGATT ATTGGTTCCAATAAAATGCTAGGGAAATATCTCTCATCAAAAATTATTGA TATCTTTTGTAGACGATATTCTTATTCTCATGTCAAGCTACAAATTTGTT GTGATAAAAGTCTTTCTTGGGATATAATTAATGGTAGGATTGATATGGGA ATTTTACCGGACAATGAAGTCCCAACAAATTTGTATAATTTATTGCATCG AACATCTTACTTTGAAGAACAAATGGTTCTGGTTATACCAATATCTTATG AACATCAATTGACTAATGATCTAACTAAATTAAATTTAGTTACTATAAAA CCTCATCTTCAATCTCGGAACTTTATGGATAATATTTTAAATAGATTTAA TCTTGAGCTTAAACAATTAAAAATAAGATTAGCACTCAATTCTAGCGAAG CTATTAAACGTTCAGTATATAATGGATTAGGCATGGCATTTTTATCTACT ATATATGTGAAAGAGGAATTCTATAAAAAACGTCTGAATTCAATAACATT AAACCTTAAAAATACTAATAAACGGTTTACATTAGTTATTAATATTAAA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:653600..654448+

>mRNA_E-siliculosus-1a_M_contig98.17738.1 ID=mRNA_E-siliculosus-1a_M_contig98.17738.1|Name=mRNA_E-siliculosus-1a_M_contig98.17738.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1698bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:653600..654448+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
AAAGTGAAAGGTTTTTCATTCACCCTAAGGCAATTAAAAGTTATTCAAAC
AATAAAAACTGAAGGAAATGTAAAAATTACATCAAAACACTTAAAGTTAT
CCCAACCAGCCGTTAGCTTACAGCTTAAACAATTACAACAAAATATTTAT
TCCAAAATTTTAATACGAAAGAAAAATGAAATTTATTTTACTCCAGAAGG
AGAATTAGTTTTAGATTATGCTAATAAGATTTTAAGATTATGCGAAGAAG
CTGATAAGGCTATTCTATATTTAAAAAAGATTAAAAAATTTACTCTGATT
ATTGGTTCCAATAAAATGCTAGGGAAATATCTCTCATCAAAAATTATTGA
TATCTTTTGTAGACGATATTCTTATTCTCATGTCAAGCTACAAATTTGTT
GTGATAAAAGTCTTTCTTGGGATATAATTAATGGTAGGATTGATATGGGA
ATTTTACCGGACAATGAAGTCCCAACAAATTTGTATAATTTATTGCATCG
AACATCTTACTTTGAAGAACAAATGGTTCTGGTTATACCAATATCTTATG
AACATCAATTGACTAATGATCTAACTAAATTAAATTTAGTTACTATAAAA
CCTCATCTTCAATCTCGGAACTTTATGGATAATATTTTAAATAGATTTAA
TCTTGAGCTTAAACAATTAAAAATAAGATTAGCACTCAATTCTAGCGAAG
CTATTAAACGTTCAGTATATAATGGATTAGGCATGGCATTTTTATCTACT
ATATATGTGAAAGAGGAATTCTATAAAAAACGTCTGAATTCAATAACATT
AAACCTTAAAAATACTAATAAACGGTTTACATTAGTTATTAATATTAAAA
AAGTGAAAGGTTTTTCATTCACCCTAAGGCAATTAAAAGTTATTCAAACA
ATAAAAACTGAAGGAAATGTAAAAATTACATCAAAACACTTAAAGTTATC
CCAACCAGCCGTTAGCTTACAGCTTAAACAATTACAACAAAATATTTATT
CCAAAATTTTAATACGAAAGAAAAATGAAATTTATTTTACTCCAGAAGGA
GAATTAGTTTTAGATTATGCTAATAAGATTTTAAGATTATGCGAAGAAGC
TGATAAGGCTATTCTATATTTAAAAAAGATTAAAAAATTTACTCTGATTA
TTGGTTCCAATAAAATGCTAGGGAAATATCTCTCATCAAAAATTATTGAT
ATCTTTTGTAGACGATATTCTTATTCTCATGTCAAGCTACAAATTTGTTG
TGATAAAAGTCTTTCTTGGGATATAATTAATGGTAGGATTGATATGGGAA
TTTTACCGGACAATGAAGTCCCAACAAATTTGTATAATTTATTGCATCGA
ACATCTTACTTTGAAGAACAAATGGTTCTGGTTATACCAATATCTTATGA
ACATCAATTGACTAATGATCTAACTAAATTAAATTTAGTTACTATAAAAC
CTCATCTTCAATCTCGGAACTTTATGGATAATATTTTAAATAGATTTAAT
CTTGAGCTTAAACAATTAAAAATAAGATTAGCACTCAATTCTAGCGAAGC
TATTAAACGTTCAGTATATAATGGATTAGGCATGGCATTTTTATCTACTA
TATATGTGAAAGAGGAATTCTATAAAAAACGTCTGAATTCAATAACATTA
AACCTTAAAAATACTAATAAACGGTTTACATTAGTTATTAATATTAAA
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