mRNA_E-siliculosus-1a_M_contig98.17729.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: D7G0Y5_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Y5_ECTSI) HSP 1 Score: 509 bits (1310), Expect = 2.190e-175 Identity = 256/264 (96.97%), Postives = 262/264 (99.24%), Query Frame = 1 Query: 124 MRWAVAFLPLCLVTASGFMMRTCPGRSCRMADQPQHDGVERAQPAPSATPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
MRWAVAFLPLCLVTASGFMM+TCPGRSCRMADQ QHDGVERAQPAPS++PLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQ+AFMDITIG SPSGRLV+NLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWAD+RYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML
Sbjct: 1 MRWAVAFLPLCLVTASGFMMQTCPGRSCRMADQSQHDGVERAQPAPSSSPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A835YNC6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNC6_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.150e-51 Identity = 93/183 (50.82%), Postives = 127/183 (69.40%), Query Frame = 1 Query: 403 EPEVTQKAFMDITIGGSPSGR----------LVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGK--SGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
EPEVT +A M +++ G P+G +V+ LYGK VP+TV NF AL+ G G SY+GT Y+V+ GLN+Q GA+G SGK +G+S+ E ENF+++H EG++SMVR D + DSRFFI+IK DAGWAD RYVAFGR+ EG+D + I+++KV+ +N+P KPVVIE+C ML
Sbjct: 2 EPEVTSRALMRLSVDGKPAGNTAASCPGAGTIVIGLYGKTVPETVANFEALVMGDTDGGYSYKGTTFYKVVQGLNMQAGAVGDFSGKGLTGLSAKKEPFGPENFEVRHGAEGMVSMVRGPDTKNDSRFFITIKPDAGWADGRYVAFGRVLEGLDALRGIDQLKVQTPSNRPLKPVVIEECVML 184
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A6V1WNP3_HETAK (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WNP3_HETAK) HSP 1 Score: 170 bits (430), Expect = 5.350e-45 Identity = 94/216 (43.52%), Postives = 133/216 (61.57%), Query Frame = 1 Query: 274 LSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIP--QENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
LSR+ F+ +AAAI +G + + AD+I + +VT K F D++I G P+GR+V++L+G+ P T NF AL+ G+ G Y+G AYRV+ ++Q+G+IG ++G+SG SS P ENF+I H GL+SM R D + DSRFFI + DAGWAD +YVAFG++ EG VV IE++K + N P K VVIE CG+L
Sbjct: 25 LSREHFIASSAAAI---LGCSQIASPFPSF----ADQIIFAEDKYKVTSKCFFDLSIEGKPAGRIVISLFGEEAPQTCANFRALVEGR--PGYGYRGERAYRVIQDFSVQIGSIGDKTGRSGKSSFDGGAPFGPENFNIPHTDAGLVSMARGLDGKTDSRFFIQTQGDAGWADGKYVAFGKVTEGFTVVQEIEKLKTQPPQNNPTKKVVIEDCGVL 231
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A6V2NXR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXR4_9STRA) HSP 1 Score: 155 bits (391), Expect = 1.690e-39 Identity = 79/170 (46.47%), Postives = 107/170 (62.94%), Query Frame = 1 Query: 406 PEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
P VT++ ++D+ IG GRL + L+G+++P TV NF L + SY GT YRVL IQ GAIG +GK+G S+ G + +N+ + H K+GL+SMVR+ DSRFFI+ DDAGWAD++Y AFG + +GMD V IE+V V N PK PV I CG+L
Sbjct: 66 PVVTKRVYLDVQIGDKEPGRLTIGLFGELMPKTVDNFEQLCSTN-----SYAGTTFYRVLSDFTIQGGAIGDPTGKTGKSAFGSSFEPDNYRLMHTKKGLVSMVRSLSGGVDSRFFINCNDDAGWADDKYAAFGIVEDGMDYVKKIEKVSVSPPKNSPKTPVTIIGCGVL 230
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A7S4MQY5_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MQY5_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.750e-39 Identity = 92/216 (42.59%), Postives = 125/216 (57.87%), Query Frame = 1 Query: 268 TPLSRQAFLGGAAAAIPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
T LSR+A + A A +V+G G A I+ V P +T++ F+D+ IG GR+V+ LYG+++P T +NF L G SY GT YR L I GAI SG SG S+ G +N+++KH K GL+SMV++ DSRFFI+IKDDAGWAD+RY AFG + EGMD+V IE+V V N PK + I++ G+L
Sbjct: 78 TGLSRRAAVQSALAPAFVVMG-GAGPAQASYIDPTV--------DVPTITKRVFLDVKIGDEEPGRIVIGLYGELMPKTSENFEKLCEGN-----SYGGTTFYRALSEFQISGGAIDDPSGNSGKSAFGAPFEPDNYNLKHTKAGLVSMVKDKSGGADSRFFITIKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVSRPKNTPKVAISIQRSGLL 279
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A7R9W6P2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W6P2_9STRA) HSP 1 Score: 150 bits (379), Expect = 2.010e-38 Identity = 84/186 (45.16%), Postives = 109/186 (58.60%), Query Frame = 1 Query: 376 ADKIAAGWQEPEVTQKAFMDITIGGSPS------GRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
A I P VT++ ++D+ IG + GRLV+ LYG+++P T +NF L G Y GT YRVL L I GAIG G SG S+ G + +NF++KH K GL+SMVR+ DSRFFI++KDDAGWAD+RY AFG + EGMD+V IE+V V N PK V I G +
Sbjct: 6 ASYIDPALDAPRVTKRVYLDVMIGDDEAAEAEGAGRLVIGLYGELMPKTAENFERLCEGNG-----YAGTTFYRVLSDLQISGGAIGDPKGDSGKSAFGSSFEPDNFNLKHTKAGLVSMVRDKTGGVDSRFFINLKDDAGWADDRYAAFGIVEEGMDLVGKIEKVDVARPKNTPKVAVRITGSGFV 186
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: B8C839_THAPS (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C839_THAPS) HSP 1 Score: 148 bits (373), Expect = 1.080e-37 Identity = 84/180 (46.67%), Postives = 115/180 (63.89%), Query Frame = 1 Query: 406 PEVTQKAFMDITIGGSPSG-RLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRS--GKSGVSSTGENIP--QENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAE-----GMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
P++TQK ++DI + + + RLV+ L+G+ + T +NF L T N G SY GT YRV+ G IQ GAIGS S GKSG S+ P +N++IKH +GL+S VRNA+ DSRFFI +DDAGWAD+RY AFG + E GM++V + R++V+ N PK PV+I CG+L
Sbjct: 1 PKITQKVYLDIKLPTNKTPKRLVIGLFGEAMHKTAENFQTLCT--NTEGPSYAGTSFYRVISGTTIQGGAIGSNSSSGKSGTSAFENGAPFTPDNYNIKHRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A8J4EVH7_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EVH7_9CHLO) HSP 1 Score: 150 bits (378), Expect = 1.780e-37 Identity = 82/201 (40.80%), Postives = 116/201 (57.71%), Query Frame = 1 Query: 313 IPLVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
+ L +G A++ ++ + A +EP VTQK F D+++GG P+GR+V+ LYG VVP TV NFVAL TG+ G Y+G +R++ IQ G +G G S G P ENF + H G+LSM S+FFI+ D W + R+V FGR+ EGMD+VH +E V V+ G KP +PVV++ CG+L
Sbjct: 59 VALAIGAAAAIS----VKGLATSNSARAEEEPVVTQKVFFDVSVGGKPAGRIVLGLYGDVVPKTVANFVALATGEK--GFGYKGCTFHRIIKNFVIQGGDFERGNGTGGYSIYGRRFPDENFKLLHAP-GVLSMANAGPNTNGSQFFITTVD-TPWLNGRHVVFGRVLEGMDIVHALEDVTVDRGA-KPTQPVVVDNCGLL 250
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: A0A5J4Z0I4_PORPP (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0I4_PORPP) HSP 1 Score: 146 bits (368), Expect = 5.860e-37 Identity = 76/164 (46.34%), Postives = 103/164 (62.80%), Query Frame = 1 Query: 430 MDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSG--VSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
MD+ + G R+V+ L+G V P TV+NFV LIT K AG Y+G+ YRV+ GL +Q G I S GK G + G +P ENFD++H GL+SM D + DSRF I K D+G+ D RY+AFGR+ EGM V++ +E + G N+PK+PV I CG+L
Sbjct: 1 MDVQVEGEEPQRIVIGLFGDVAPTTVQNFVGLITDKEGAG--YRGSSFYRVVSGLTVQGGDIPSSKGKQGRAILPGGSYMP-ENFDLRHSVAGLISMCHARDGKADSRFLIQTKADSGYLDGRYIAFGRVLEGMSVIYHMEEIGGVGPQNRPKQPVTIVDCGLL 161
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Match: D8U4U4_VOLCA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U4U4_VOLCA) HSP 1 Score: 147 bits (372), Expect = 1.110e-36 Identity = 84/199 (42.21%), Postives = 116/199 (58.29%), Query Frame = 1 Query: 319 LVVGVGRAVADNEIIEKMVADKIAAGWQEPEVTQKAFMDITIGGSPSGRLVVNLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRSGKSGVSSTGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADNRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 915
L + +G A A + I + A+ +EP VTQK F D+++GG P+GR+V+ LYG+VVP TV NFVAL TG+ G Y+G +R++ IQ G +G G S G P ENF + H G+LSM S+FFI+ D W + R+V FGR+ EGMDVVH +E V V+ +P +PVVI+ CG+L
Sbjct: 55 LALALGAAAAIS--INGLATPSSASAEEEPVVTQKVFFDVSVGGKPAGRIVMGLYGEVVPKTVDNFVALATGEK--GFGYKGCTFHRIIKNFVIQGGDFERGNGTGGYSIYGRRFPDENFKLLHAP-GVLSMANAGPNTNGSQFFITTVD-TPWLNGRHVVFGRVLEGMDVVHSLEDVPVDRSA-RPSQPVVIDNCGLL 246 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17729.1 >prot_E-siliculosus-1a_M_contig98.17729.1 ID=prot_E-siliculosus-1a_M_contig98.17729.1|Name=mRNA_E-siliculosus-1a_M_contig98.17729.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=265bp MRWAVAFLPLCLVTASGFMMRTCPGRSCRMADQPQHDGVERAQPAPSATPback to top mRNA from alignment at E-siliculosus-1a_M_contig98:573463..581801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17729.1 ID=mRNA_E-siliculosus-1a_M_contig98.17729.1|Name=mRNA_E-siliculosus-1a_M_contig98.17729.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=8339bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:573463..581801- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:573463..581801- >mRNA_E-siliculosus-1a_M_contig98.17729.1 ID=mRNA_E-siliculosus-1a_M_contig98.17729.1|Name=mRNA_E-siliculosus-1a_M_contig98.17729.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1590bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:573463..581801- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |