mRNA_E-siliculosus-1a_M_contig98.17723.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI) HSP 1 Score: 967 bits (2501), Expect = 0.000e+0 Identity = 485/569 (85.24%), Postives = 504/569 (88.58%), Query Frame = 3 Query: 258 EDGVWTYDAKRLRAKLASIPTQGKDMDEVTAYVKNVCREEGVQVATSDSRKGKDGRWVSRELKCRLGMRNRQNDHKAKDGGKTAPKILRTSQRIGCPFKVGVAIRWPSKRKAREHPYLSERATTLTHNHTVAKDVDTTPLRKRKAPSDSLAMANPYKLRESEAKTTAHEQRDDRRGRTEGLRATAFNLQKRPNELANENRRSDIKRRILRSQEDGCLDDETCEFLVDMWEKGELIDGAEGFDNXXXXXXXGLFCGYLHMANAPPYVPGTRDDATVSFWSKGTDRLQYTEHAFKACFKAHFPVIFEGDDTCRSVMGTACKSALARSLTRIGELGGRHGTSMFGVSPEFVESWNEGVVDGDELKKAFGTNSTWTIQNFEKDEKVDAQSFNTLECGGASDLVRNTRMGGLCHPHRPRRRGGVLRGTKSVRGKSWSGSEVTAFAMRKGGVTHSHVDAQMVHGESFILPAAGIMRSVNRRGSGPAKRAILMCAHDMERVVDLLGLDVSKPSSSQYAGEIVDLEGLATRLRANSIRFIVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILNI 1964
+DGVWTY+A+RLRAKLASIPTQG DM EVTA VK VCREEGV VATSDSRKGKDGRWVSRELKC+LGMRNRQNDHKAKDGGKT PKILR SQRIGCPFKV VAIRWP+KRKAREHPYLSERATTLTHNHTV KDVDT KRK SDSL MANPYKLRESEAK HE RDDRR RTEGLRATAF+ QKR E NENRRSDIKRRILRSQE G LD+ CEFLVD+WEKGELIDG EGF N GLFCGYL MANAPPYVPG RDD TV+FWSKGTDRL+YTEHAFKAC KAHFPVIFEGDDT RSVMGTACKSALAR+LTRIG LGGR+GTSMFGVSP FVESWNEGV+DGDELKKAFGTN TWT QNFE+D+KVD SFNT+EC GASDLVRNTRMGGLCHP RP RGGVL GT SVRGKSWSGSEVTAFAMR GGVTHSHVD QMVHGE LPAAG MRSVNRRGSGPAKRAILMCAHDM+RVVDLLGLDV+KPSSSQY G IVDLEGLATRLR NSIRF+VVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILNI
Sbjct: 52 QDGVWTYNAQRLRAKLASIPTQGMDMGEVTANVKKVCREEGVHVATSDSRKGKDGRWVSRELKCKLGMRNRQNDHKAKDGGKTVPKILRKSQRIGCPFKV-VAIRWPTKRKAREHPYLSERATTLTHNHTVTKDVDTIRQPKRKESSDSLVMANPYKLRESEAKPPGHETRDDRRDRTEGLRATAFDPQKRQKEQPNENRRSDIKRRILRSQEGG-LDNYICEFLVDIWEKGELIDGTEGFGNGADGFDNGLFCGYLDMANAPPYVPGRRDDPTVAFWSKGTDRLEYTEHAFKACLKAHFPVIFEGDDTYRSVMGTACKSALARNLTRIGGLGGRNGTSMFGVSPSFVESWNEGVIDGDELKKAFGTNPTWTTQNFEEDDKVDVLSFNTIECVGASDLVRNTRMGGLCHPDRPPTRGGVLTGTTSVRGKSWSGSEVTAFAMRTGGVTHSHVDPQMVHGEHLYLPAAGTMRSVNRRGSGPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPILNI 618
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Match: D7G7Y6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Y6_ECTSI) HSP 1 Score: 399 bits (1024), Expect = 2.540e-130 Identity = 205/381 (53.81%), Postives = 255/381 (66.93%), Query Frame = 3 Query: 831 PNELANENRRSDIKRRILRSQEDGCLDDETCEFLVDMWEKGELIDGAEGFDNXXXXXXXGLFCGYLHMANAPPYVPGTRDDATVSFWSKGTDRLQYTEHAFKACFKAHFPVIFEGDDTCRSVMGTACKSALARSLTRIGELGGRHGTSMFGVSPEFVESWNEGVVDGDELKKAFGTNSTWTIQNFEKDEKVDAQSFNTLECGGASDLVRNTRMGGLCHPHRPR-----RRGGVLRGTKSVRGKSWSGSEVTAFAMRKGGVTHSHVDAQMVHGESFILPAAGIMRSVNRRGSGPAKRAILMCAHDMERVVDLLGLDVSKPSSSQYAGEIVDLEGLATRLRANSIRFIVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPIL 1958
P E ANE RR +++ RILR Q L ETC+ LVDMW KGEL DG + + GLF G+L NAPPY R+D SFWSKG R ++++ F+AC A FPV+ EGD T RSVMG CK+A+ ++++ LG R GTSMF +S EFV+ W EG V + L+ AFG +TWTIQNFE++++VDA S+ T+EC A+ +VR TRMG LC+P GG L S+ W+GSEVTAFA R+G VTH HVDA V+ + LPAAG MRSVNR GPAKRAI++CAHDM+RVV L LDV KP + QY G + DL LA L+ANSI F+V+DFPE CSYAIP +CAHM VTLRLVE+CAW+P L
Sbjct: 11 PEEEANEERRDNVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSLGDGFGCLDNGLFYGFLSRDNAPPYNVRRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDIT-RSVMGAVCKAAVGMHISKLRNLGVRRGTSMFSLSEEFVDCWVEGNVGDNMLRDAFGGKTTWTIQNFEENQRVDACSYQTIECAAATGIVRKTRMGALCYPDTADTAGTDNTGGELTKPVSIGEVLWAGSEVTAFATRRGSVTHIHVDALEVNEKPLFLPAAGAMRSVNRGDRGPAKRAIVVCAHDMDRVVRLFKLDVRKPPAMQYGGAVSDLRRLAAELKANSIGFVVIDFPEACSYAIPGKCAHMSVTLRLVETCAWNPAL 390
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE) HSP 1 Score: 220 bits (560), Expect = 4.110e-62 Identity = 136/350 (38.86%), Postives = 192/350 (54.86%), Query Frame = 3 Query: 939 MWEKGELIDGAEGFDNXXXXXXX--GLFCGYLHMANAPPYVPGTRDDAT---VSFWSKGTDRLQYTEHAFKACFKAHFPVIFEGDDTCRSVMGTACKSALARSLTRIGELGGRHGTSMFGVSPEFVESWNEGVVDGDELKKAFGTNSTWTIQNFEKDEKVDAQSFNTLECGGASDLVRN-TRMGGLCHPHRPR-RRGGVLRGTKSVRGKSWSGSEVTAFAMRKGGVTHSHVDAQMVHGES---FILPAAGIMRSVNRRGS-GPAKRAILMCAHDMERVVDLLGLDVSKPSSSQYAGEIVDLEGLATRLRANSIRFIVVDFPEYCSYAIPARCAHMFVTLRLVESCAWHPI 1955
+ E ++DG E F GLF L AP R+D + FWS G +R +E+ F AC KA P++ EGD +S MG + A + + R+G +G G ++P+ ++W G V +L+ T+TI N E+++ D + T+E + ++R TRMG LC P R +R G L G S G +WSGSE FA + GG+T+ HVD Q V G + +PAAG++R VN + GPAK+AI++ A DM RV++ L ++ K S+SQY G L A LR IRF+V++FP CSYA+PARCAH FVT+ LVES AWHP+
Sbjct: 3 LLETNSVLDGIESFGEYGKDEGLNNGLFSCLLRKDTAP------REDRSRRPCPFWSNGPERKGLSENVFIACTKAKIPLVLEGDAPPKSPMGEMMQYAADQRVARLGYIGKTSGRGPLALTPDLTDAWRTGAVTDQQLRDTLN-GGTFTIDNTEENKSRDRTCYATMENDTVTAMIREGTRMGELCFPRRGNHQRCGRLTGN-SADGVAWSGSECMLFA-KDGGMTNPHVDVQSVPGGTGTIIHMPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAFVTIGLVESSAWHPV 343
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.490e-37 Identity = 99/260 (38.08%), Postives = 146/260 (56.15%), Query Frame = 3 Query: 1149 AHFPVIFEGDDTCRSVMGTACKSALARSLTRIGELGGRHGTSMFGVSPEFVESWNEGVVDGDELKKAFGTNSTWTIQNFEKDEKVDAQSFNTLECGGASDLVRN-TRMGGLCHPHRPRR-RGGVLRGTKSVRGKSWSGSEVTAFAMRKGGVTHSHVDAQMVHGES---FILPAAGIMRSVNR-RGSGPAKRAILMCAHDMERVVDLLGLDVSKPSSSQYAGEIVDLEGLATRLRANSIRFIVVDFPEYCSYAIPARCAHM 1910
A P++ EGD +S MG + A + + RIG +G G ++P ++W G V +L+ T+TI N E++++ D + TLE + ++R TRMG LC P R + G L G K G +WSGSE FA + GG+T+ HVD Q V G + +PAAG++R VN + PAK+AI++ A DM RV++ L ++ K S+SQY G L A L++ IRF+V++FP CSYA+PAR + M
Sbjct: 314 AAIPLVLEGDAPAQSPMGEMMQYAAGKGVARIGYIGKTSGRGPLKLAPGLTDAWRTGAVTDKQLRDTLN-GGTFTIDNTEENKRTDKTCYATLENDTVTAMIREGTRMGELCFPRRGNHLQYGTLTG-KEADGVAWSGSECMLFA-KDGGMTNPHVDVQSVPGGTGRIIHMPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPARPSFM 570
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Match: D7G552_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G552_ECTSI) HSP 1 Score: 123 bits (308), Expect = 4.200e-29 Identity = 67/141 (47.52%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 831 PNELANENRRSDIKRRILRSQEDGCLDDETCEFLVDMWEKGELIDGAEGFDNXXXXXXXGLFCGYLHMANAPPYVPGTRDDATVSFWSKGTDRLQYTEHAFKACFKAHFPVIFEGDDTCRSVMGTACKSALARSLTRIGEL 1253
P E ANE RR D++ RILR Q L ETC+ LVDMW KGEL DG + F + GLF G+L NAPPY R+D SFWSKG R ++++ F+AC A FPV+ EGD T RSV G K L + G L
Sbjct: 11 PEEEANEERRDDVRARILRCQHGQALAKETCDILVDMWHKGELKDGTDSFGDGSRGIDNGLFYGFLSRDNAPPYNARRREDDGDSFWSKGEARRRHSDRVFRACLTAGFPVLIEGDIT-RSVWGLLVKQLLGSTSRSWGTL 150 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17723.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_M_contig98.17723.1 >prot_E-siliculosus-1a_M_contig98.17723.1 ID=prot_E-siliculosus-1a_M_contig98.17723.1|Name=mRNA_E-siliculosus-1a_M_contig98.17723.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=624bp MQQALHIHTAAAAEAATSRFVSYSSTPPTNNKLGRPRPAAQQKSSVNVCGback to top mRNA from alignment at E-siliculosus-1a_M_contig98:438339..445546- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_M_contig98.17723.1 ID=mRNA_E-siliculosus-1a_M_contig98.17723.1|Name=mRNA_E-siliculosus-1a_M_contig98.17723.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=7208bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:438339..445546- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:438339..445546- >mRNA_E-siliculosus-1a_M_contig98.17723.1 ID=mRNA_E-siliculosus-1a_M_contig98.17723.1|Name=mRNA_E-siliculosus-1a_M_contig98.17723.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=3744bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:438339..445546- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)back to top |