mRNA_E-siliculosus-1a_M_contig98.17717.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17717.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17717.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: D7G0X4_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X4_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 9.550e-91
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 3 
Query:  447 SKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEAL 878
            ++GELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKET+EELGLSCDESSLRFVCTVATTAKG+TDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEAL
Sbjct:   32 TQGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETDEELGLSCDESSLRFVCTVATTAKGSTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEAL 175
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S0NEA1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NEA1_9CRYP)

HSP 1 Score: 213 bits (543), Expect = 5.700e-61
Identity = 100/206 (48.54%), Postives = 141/206 (68.45%), Query Frame = 3 
Query:  285 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALEEAL 878
            GQD  E+FDV+ PP   S+S     P  AG  K R LVH  GDWHR++H+WL++ +G L++Q+RS  KDTFPG WDVS+ GH ++G+  +ETA+KE  EELGL  +E  L ++ T+AT+ +G++ + GDF+CNEYKDI+LL++DG ++DLKF+P EV+ V  V  + L+E  E Q        D  YIPRP +Y++ LF AL E +
Sbjct:   52 GQDLAELFDVYKPP--ASISSFRGEPEKAGISKQRKLVHTQGDWHRAIHLWLYDLQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKEAKEELGLDVEEEQLEYLGTIATSMRGSSPITGDFLCNEYKDIFLLKYDGSLEDLKFAPEEVQAVSRVGWKTLQEQLEQQIGPEQQSVDGPYIPRPRHYLDLLFGALRERI 255
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: L1JKA1_GUITC (Nudix hydrolase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKA1_GUITC)

HSP 1 Score: 207 bits (526), Expect = 1.620e-58
Identity = 97/206 (47.09%), Postives = 140/206 (67.96%), Query Frame = 3 
Query:  285 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALEEAL 878
            GQD  E+FDV+ PP   S+      P  AG  + R LVH  GDWHR++HIWL++ +G L++Q+RS  KDTFPG WDVS+ GH ++G+  +ETA+KE+ EELGL   +  L ++ T+AT+  G++ + GDF+CNEYKDI+LL+++G + DLKF+P EV+ V  V  ++L++  E Q        D  YIPRP +Y++ LF ALEE +
Sbjct:   51 GQDLSELFDVYKPP--SSIPGFRGEPERAGISRQRKLVHTQGDWHRAIHIWLYDGQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKESKEELGLDIKKEELEYLGTIATSMAGSSPITGDFLCNEYKDIFLLKYEGHLDDLKFAPEEVQAVSRVDWRSLRQQLEEQIGPDGQSIDGRYIPRPRHYMDLLFGALEERI 254
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S0XXS4_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XXS4_HEMAN)

HSP 1 Score: 206 bits (524), Expect = 1.290e-57
Identity = 101/204 (49.51%), Postives = 135/204 (66.18%), Query Frame = 3 
Query:  285 GQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQ--------DPTYIPRPDYYVEPLFKALEE 872
            GQD GE+FD++  P+  +    S  PR  G  K RG VH DGDWHR+VH+WL+  +GE VLQ+RS  KDTFPG WDVSVGGH T+G+  + T +KET EELG+   E+ L  + TVAT+ KG +   GDF CNE+KDI+LL++ G ++ L F+ +EV DVKLVP Q +++   AQ        D  Y+PRP  Y++ LF A+ E
Sbjct:   93 GQDLGELFDLYHAPD--AEFAASGEPRKTGKNKERGKVHRDGDWHRAVHVWLYTPQGEFVLQQRSEKKDTFPGKWDVSVGGHVTSGDSVMHTVLKETQEELGVEVTEAELERLPTVATSLKGNSPKQGDFTCNEFKDIFLLKYSGTLEGLNFADNEVSDVKLVPWQEVEKDMLAQVSPDGEPTDGAYVPRPMSYIDILFDAMRE 294
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A6T7KLM2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A6T7KLM2_9EUKA)

HSP 1 Score: 198 bits (503), Expect = 1.790e-55
Identity = 105/211 (49.76%), Postives = 136/211 (64.45%), Query Frame = 3 
Query:  252 LSSAVEDEVEVGQDSGEMFDVFLPPEGGSLSV-LSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGP---VQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKAL 866
            +S+A  +    GQD GE+F+++ PP   SL+  LS PP   G +K RG VHADGDWHRSVH+WL  S G L+LQ+RS  KDT PGMWDVS  GH TAG++SL TA KE  EELGL  DE++LR   VCT+ + A+G T  HG F+CNE +D+YLL+       V  L     EVE  +LV    +  A+E  +PT++PR  +YV  L +AL
Sbjct:   25 ISAACTNVNAEGQDLGEIFELYSPP--SSLTAPLSMPPTELGVQKPRGQVHADGDWHRSVHVWLSTSDGRLLLQRRSQYKDTHPGMWDVSCAGHITAGDDSLTTARKELEEELGLVIDETTLRRALVCTLPSCARGATARHGPFLCNELQDVYLLQRPAEQLEVGSLSLEAGEVEATELVDAHEVLRAWEQAEPTFVPRQPHYVHALRQAL 233
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S0IRD5_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IRD5_9EUKA)

HSP 1 Score: 192 bits (487), Expect = 4.770e-53
Identity = 100/213 (46.95%), Postives = 137/213 (64.32%), Query Frame = 3 
Query:  255 SSAVEDEVEVGQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQD---LKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEAL 878
            ++ +E     GQD  EMF+++ PP    +  LS+PP P G RK RG VHADGDWHRSVH+WL    G L+LQ+RS  KDT PGMWDVS  GH +AG++SL TA KE  EELG+S D S LR   +CT+ + A+G T  HG FVCNE +DIYL+++     +   L     EVE ++L+  + + +A+E  + +++PRP +YV    +AL E L
Sbjct:   35 AATLESANAFGQDLSEMFELYEPPH-CKIEPLSKPPVPLGVRKPRGEVHADGDWHRSVHVWLRTLDGRLLLQRRSQYKDTHPGMWDVSCAGHISAGDDSLGTARKELEEELGVSVDVSVLRGALLCTLPSCARGATTRHGPFVCNEIQDIYLVQYPAEQLEAGALSLESGEVEAIELLDARKVLQAWERAELSFVPRPPHYV----RALREGL 242
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S0QHM2_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHM2_9CRYP)

HSP 1 Score: 192 bits (489), Expect = 7.000e-53
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  276 VEVGQDSGEMFDVFLPPE-------GGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSEV--------EDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEA 875
            V +GQ+ GE+FD +L P+       GG   VLS      G    R  VHA G WHR+VHIWL+NSKG+++LQKRS  KDTFP  WDVSVGGH +AG+  +E A++ET EELGL   E  L FV TVATT  G++   G F CNEYKD++L R+DGP + L ++P EV        ++V+    + +  A E  D   I RP YY++ LF AL  A
Sbjct:   66 VHLGQNLGELFDTYLEPDASFFTAKGGVNPVLS------GKSLPRKQVHATGTWHRAVHIWLYNSKGQILLQKRSDEKDTFPSKWDVSVGGHLSAGDTVVEAALRETEEELGLKIGEGDLAFVATVATTVAGSSAKQGAFTCNEYKDLFLARYDGPAEALVYAPDEVAGVAWRDADEVEAALRKQIGPAGEQLDGPLIARPAYYLDALFPALRRA 274
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S4B8T2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B8T2_CHRCT)

HSP 1 Score: 179 bits (455), Expect = 2.940e-47
Identity = 94/207 (45.41%), Postives = 124/207 (59.90%), Query Frame = 3 
Query:  270 DEVEVGQDSGEMFDVFLPPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLR--FVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQD---LKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEEA 875
            D   +GQD GE F+++  P   + ++LS PP P G RKARG VH DGDWHRSVH+WL +  G L+LQ+RS  KDT PG+WDVS  GH +AG+ SL+TA KE  EELG +   + L   FV T A+T +G T  HG F CNEY+DIYL        D   L     EV  V+++    L  A+E +D  ++PR   Y   L  A+++ 
Sbjct:  132 DANALGQDLGEQFELYAGPLNEAPTILSAPPTPLGVRKARGEVHRDGDWHRSVHVWLGDEMGRLLLQRRSEHKDTHPGLWDVSCAGHISAGDGSLDTAQKELEEELGFAVGLAELEACFVGTFASTMRGITAKHGAFECNEYQDIYLFITPSASLDADKLVLGAGEVAGVQMIDATELISAWEREDAQFVPRSALYAHTLRAAVDKT 338
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A6V2PJN3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2PJN3_HETAK)

HSP 1 Score: 176 bits (447), Expect = 1.350e-46
Identity = 91/214 (42.52%), Postives = 131/214 (61.21%), Query Frame = 3 
Query:  249 LLSSAVEDEVEV---GQDSGEMFDVFL--PPEGGSLSVLSEPPRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDG-PVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKALEE 872
            L+ + +  EV V   GQD+ E+F ++   PPE  S   +   P   G  KARG VH DGDWHRSVHIW+ + KG L+LQ+RS  KDTFP  WDVS GGH T  +  +ETA++E  EE+GL   E +   VC V +  KGTT  HGDF  NE++D+YL+  +G  + D+  +  EV ++K +     ++ Y+A +  Y+PRP  Y + LF+ +++
Sbjct:   72 LIRTLMAKEVAVYAEGQDASELFALYNAPPPECDSNCCV---PIKTGILKARGEVHRDGDWHRSVHIWIGDDKGNLMLQRRSKFKDTFPNCWDVSAGGHITGYDSVMETAVREVEEEVGLELPEQAFMHVCCVPSRLKGTTKRHGDFYDNEFQDMYLVIIEGLQLDDMTIAEGEVAEIKFMHYTEARKEYDAGNQLYVPRPKLYFKSLFEKMDK 282
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BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Match: A0A7S4UN69_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UN69_9DINO)

HSP 1 Score: 170 bits (431), Expect = 8.850e-45
Identity = 89/203 (43.84%), Postives = 122/203 (60.10%), Query Frame = 3 
Query:  273 EVEVGQDSGEMFDVFLPPEGGSLSVLSEP---PRPAGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVSVGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHGDFVCNEYKDIYLLRHDGPVQDLKFSPSE--VEDVKLVPMQALKEAYEAQDPTYIPRPDYYVEPLFKAL 866
            E   GQD  E+FD+  PP  G+   L  P   P   G  K R  VH DGDWHRSVH+WL + +G+L+LQ+RS  KDT PG WDVS  GH  AG+  LETA++E  EELGL+   S+L+ + T+A +A G T+ HG F CNEY+++YLLR  G      +SP+E  V +++  P+   + +       Y+PR   Y++ L  AL
Sbjct:   51 EFPEGQDLDELFDLCEPPPEGAPGGLLAPGAGPALTGATKQRRWVHRDGDWHRSVHVWLLDEEGDLLLQRRSKHKDTHPGCWDVSCAGHIGAGDAGLETAVRELEEELGLAVPLSALKHLFTIAASASGATERHGPFRCNEYQEVYLLRVFGAHASRGYSPAEGEVAELRSEPIAETERSLRTGAADYVPRSREYIDALVGAL 253
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X4_ECTSI9.550e-9197.22Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S0NEA1_9CRYP5.700e-6148.54Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JKA1_GUITC1.620e-5847.09Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S0XXS4_HEMAN1.290e-5749.51Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A6T7KLM2_9EUKA1.790e-5549.76Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0IRD5_9EUKA4.770e-5346.95Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0QHM2_9CRYP7.000e-5347.44Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4B8T2_CHRCT2.940e-4745.41Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A6V2PJN3_HETAK1.350e-4642.52Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4UN69_9DINO8.850e-4543.84Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:373418..378283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size813
Model size1980
Exons5
Ec32 orthologEc-23_001950.1
Ec32 ortholog descriptionNUDIX hydrolase domain
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelChlorophyta
COG Functional cat.L
EggNOG OGs2QT89@2759,34MH7@3041,37JK2@33090,COG0494@1
EggNOG free text desc.NUDIX domain
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0016787,GO:0019538,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Seed eggNOG ortholog296587.XP_002505779.1
Seed ortholog evalue1.6e-34
Seed ortholog score153.3
Taxonomic scopeViridiplantae
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936564.2088525-UTR-E-siliculosus-1a_M_contig98:373417..3745161622936564.2088525-UTR-E-siliculosus-1a_M_contig98:373417..374516Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 373418..374516 -
1696251132.8750958-UTR-E-siliculosus-1a_M_contig98:373417..3745161696251132.8750958-UTR-E-siliculosus-1a_M_contig98:373417..374516Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 373418..374516 -
1622936564.3088853-UTR-E-siliculosus-1a_M_contig98:378215..3782831622936564.3088853-UTR-E-siliculosus-1a_M_contig98:378215..378283Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 378216..378283 -
1696251132.9492602-UTR-E-siliculosus-1a_M_contig98:378215..3782831696251132.9492602-UTR-E-siliculosus-1a_M_contig98:378215..378283Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 378216..378283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936564.2294593-CDS-E-siliculosus-1a_M_contig98:374516..3745881622936564.2294593-CDS-E-siliculosus-1a_M_contig98:374516..374588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 374517..374588 -
1696251132.8877974-CDS-E-siliculosus-1a_M_contig98:374516..3745881696251132.8877974-CDS-E-siliculosus-1a_M_contig98:374516..374588Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 374517..374588 -
1622936564.2467282-CDS-E-siliculosus-1a_M_contig98:375034..3751511622936564.2467282-CDS-E-siliculosus-1a_M_contig98:375034..375151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 375035..375151 -
1696251132.8977375-CDS-E-siliculosus-1a_M_contig98:375034..3751511696251132.8977375-CDS-E-siliculosus-1a_M_contig98:375034..375151Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 375035..375151 -
1622936564.2590785-CDS-E-siliculosus-1a_M_contig98:376115..3763181622936564.2590785-CDS-E-siliculosus-1a_M_contig98:376115..376318Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 376116..376318 -
1696251132.907638-CDS-E-siliculosus-1a_M_contig98:376115..3763181696251132.907638-CDS-E-siliculosus-1a_M_contig98:376115..376318Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 376116..376318 -
1622936564.2755532-CDS-E-siliculosus-1a_M_contig98:377040..3770771622936564.2755532-CDS-E-siliculosus-1a_M_contig98:377040..377077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 377041..377077 -
1696251132.9206274-CDS-E-siliculosus-1a_M_contig98:377040..3770771696251132.9206274-CDS-E-siliculosus-1a_M_contig98:377040..377077Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 377041..377077 -
1622936564.293659-CDS-E-siliculosus-1a_M_contig98:377831..3782151622936564.293659-CDS-E-siliculosus-1a_M_contig98:377831..378215Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 377832..378215 -
1696251132.9368038-CDS-E-siliculosus-1a_M_contig98:377831..3782151696251132.9368038-CDS-E-siliculosus-1a_M_contig98:377831..378215Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 377832..378215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17717.1prot_E-siliculosus-1a_M_contig98.17717.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 374517..378215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17717.1

>prot_E-siliculosus-1a_M_contig98.17717.1 ID=prot_E-siliculosus-1a_M_contig98.17717.1|Name=mRNA_E-siliculosus-1a_M_contig98.17717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=271bp
MRSRIVGACLSGCAYGVRTSSAFVFPRCGPIMRPAGAAANHQARAYRHAA
ARGKEGGVGSLLSSAVEDEVEVGQDSGEMFDVFLPPEGGSLSVLSEPPRP
AGFRKARGLVHADGDWHRSVHIWLHNSKGELVLQKRSSSKDTFPGMWDVS
VGGHFTAGEESLETAIKETNEELGLSCDESSLRFVCTVATTAKGTTDMHG
DFVCNEYKDIYLLRHDGPVQDLKFSPSEVEDVKLVPMQALKEAYEAQDPT
YIPRPDYYVEPLFKALEEAL*
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mRNA from alignment at E-siliculosus-1a_M_contig98:373418..378283-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17717.1 ID=mRNA_E-siliculosus-1a_M_contig98.17717.1|Name=mRNA_E-siliculosus-1a_M_contig98.17717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4866bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:373418..378283- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GGCGCGTTGTCAAACAGCCGTTGCTGTGGTATCGTTGTCGAAGGACTTTG
TCTTCATATCGAAACATCATGCGGTCTCGGATTGTGGGCGCCTGTCTCTC
TGGCTGTGCGTACGGCGTGCGCACCTCCTCCGCCTTTGTTTTCCCTCGAT
GCGGCCCAATTATGAGACCCGCGGGTGCCGCGGCCAATCACCAAGCTCGG
GCCTACCGTCATGCGGCGGCGCGAGGGAAAGAGGGCGGGGTGGGGTCTCT
GCTGTCTTCTGCCGTGGAGGACGAAGTGGAGGTTGGGCAGGATTCTGGGG
AGATGTTTGACGTCTTCTTGCCGCCGGAGGGTGGATCCCTCTCGGTGCTC
AGCGAGCCCCCGCGGCCGGCGGGCTTCCGCAAGGCCAGGGGTCTCGTGCA
CGCCGACGGCGACTGGCACAGGAGCGTGCACATATGGCTGCATAACTCCA
AGGTGATGGTGGAGTGCCTTGCTTGCGCTGGGGGAGTTGACTTGAAGAGG
GCACAGGCGGGGACAGACGTCTATACAAGCGACACCTGTTGGCCCCACGC
TTGCTGTTACACCGGGAAACCACGTACTTCTGTGGAGGAAGAGAGAGACA
TGAACATGGACTACTTTTCGACATGATACATGATGACTAACCTCACATAT
CTACACAGCACCTGTGCAGTGTAAAGCTGGCAGCGTTGAATGATAAACGA
AAAGTGATCGGGTGGTAGGCTTGCGACAATAATACCGTTTGTTGTCCAGC
TGGCGCGTACTTCGTACGCTGCACGGGAGCCAAACTACAGTACTCCACAT
TACTCCTGTTGGGATATCCGCTTCGGATCAAGTACCAGGCGTATCGGTAC
ACACGTCAAGCAGCGGTCGACCAGAAAAGGATATTCACTGAAGAAATGTG
TAGAGAGGTATCTGCGACCTGCCATCTCGCCTGCACGAGAGTACTTTGGA
CACTGGCTCGAACACTCCTCAATCGGCACCAGTTTTGATACGTCATATCT
CTGGCAGGCTGAATTTGATGCCTTCCCCAGACGACACCAACGCCGCCGGG
CAACGGACGGCTCCGGGAGCAGAGCGCTTTATTCCGTCGAGAGCACAGCT
CATGAAATGGTCGAAACCGCTTGGGGGCTCTTGCCCCTTCCCTCGGTCGC
AAGCGCGGCTACTCACGCAGCCCCGTCACGATCGTTGCTGGTGTGTTCGA
ACGCAGGGCGAGCTGGTGCTGCAGAAGCGATCGTCCTCGAAAGGTGCCGA
TACACAACAGTGGTAGACTGCTGGGGCGAGGGAGCACCTGTAGCCCTGTT
CTCATCATGCTATTTGTAGCAGGCCAACGCAAGTATATCCATCCTGACGA
CACATGGGTAGTTAATTACGTACCTCTGCAGTCATGCAGATGACCTGCCT
GGCCATTGCCCCAATCGACGCGTTGCGGAGGTGGCCCAAACTGCACCTTG
AAACAGAGTACGAGGCTGTTTGGAGTTGTTGTTGGAACACTAAAGCTCTA
GACCTCATGCAAGATGACATAGACGTCGTGAGTTCGTGCCAACTGTCACA
CGTTACTTGTCTTTCGTTTGTCTTTTGTGATGAGCACGTTTTTTGTTAAA
GTCTTGTCACCCTTGTGGACACTCCTGGCACAACGTTCCCCGGGCTTCAC
CGTAGGCGTGATCCGTGTGGTGCTGGACCACAGCCTGCTGTTAGTACTAT
TGTTTTATCCTCGCCGTTGACCTCCGGGGTCGGCTTAATATGTACACACA
CCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTGTCTCTCTCCGTTGCAC
ATTCAACTTGTTTTCCAATCATGTCTGGAAGCTTGCGGCAATCCAATCCC
CTACCAGCGTTCCCTCAACTCAGCCCGACGCGTTGTTTCTTCGATCGAAA
AAAACTCTACAATAGATACGTTTCCGGGGATGTGGGACGTTAGCGTGGGC
GGGCACTTCACGGCAGGGGAAGAGAGCCTGGAGACGGCCATCAAGGAGAC
CAACGAGGAGCTGGGCTTGAGCTGCGACGAGAGCAGCCTGCGCTTCGTGT
GCACGGTGGCCACTACAGCCAAGGGGACCACCGACATGCACGGCGACTTC
GTGTGCAACGAGTACAAGGTGCGCGCTCGGGCGAGCCAGAGGCCGCAGTG
AGGGAATCGTGCCCCCGAAGTGGTTGTTCCTTGTGTGCCTGCCGGTTGAA
GAAACATGCCGCATGCTGCACGAGTCGGTACTTGCGGACCCGCAAGCTTA
AAAAACACGCCGCGTGCCGCACGCGTCAAGTAGTGCCATAGGTGACACAA
GACATATCACACACCCCGTACCGATTTTCGAAGCTCGGTTTTCTCCATAG
GATGGCGGTGCCGAAAATGGCGGCGGTGGAACCGTCTCGTTGAGAGCTTT
CCGTTAAGCATATAGTTTGATGTCGTACATTATCCTCTTCGTGGTGGTGT
GACTGAAAGTCGGTCCAAGGGATGTGGTAGCTTGTGTCACTGACGGTAGT
AGTAGTAGATTCCTTCGCGTGCCGTGCTCGTTGCTGGCATCGAAAGCAGG
GGTCGAGGTTCCCTTGCGACATTGTGGCGTTCCGTTAGCGCGGAGTGTTG
CAAGCTTTTTTCTTTGGCCGCGGAAGTGACCCCCCGCCCACCAATCACGC
ACGAGGGCGGCGCCTGGTGCATGGAGGCGTTGATGTGTTACGGGAAGGTT
TCCCCGTCTCGGTCGTGTCTTTGGCTGCTTGTTGACTACAACGACAACGC
GCGGTGATGATGTTGCAGACTGATCGACAGGAGTGCGGGAGAGCAAAGGA
TAAGGGTGAACGGTATGCTCTGTAAGAGTCACGGTTGTGGTTTCCAGGGT
GTGGGGCGCGGCCTAGCACGTCGCCACGGTTCACTTCGATCTTTTGCTGC
TTGATTAGTTGATATTTTTCTCTCTTCCCGCCTGCCTCTCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCCGTCCCCCTCTCTTCATCTATCTC
TCTCCCCCCCTTTCTCTCTCATGCCCTTGCAGGACATCTACCTGCTTCGG
CACGACGGACCAGTGCAGGACCTAAAGTTTTCGCCCAGCGAGGTCGAAGA
CGTCAAGCTCGTGCCGATGCAGGCGCTCAAGGAAGCTTACGAGGCCCAGG
TTGGTCTATCAAAGTCCCCCAAATGTTATTGTTTCGCAGCGATTTTTGTC
GTGTACACCCGTGGAGGGATATTTGACGCCATGTTTTTTCACAGGCGATG
TGGTAGAATAGAGACCGTGATCGGACCAGTGACGACGGTGAACTTGTCTT
GTCAATACTGTGAACCGTCGTTCCCGATCACCTAGAGCCACGCGCGGCTG
GGTCTGTCCACACTCTTCTCTTTCTCTCTGTCTCTCTCTCTCTCTGTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTATC
TATCTCTATCTCTATCTCTATCTCTATCTCTCCGCCCCTGTACCTCCTGA
ATGCTTCTCACCCTCTCTGTCTGCCTGTCTCTCTGCCCCTCTGCCTGTCT
GTCTCTCCCCCCCTCTTCACTCTCTCGATTTCCCGGCACCACTAGGACCC
AACGTACATCCCGCGACCGGACTACTACGTCGAGCCCCTCTTCAAGGCGT
TGGAAGAAGCCCTCTAGGACCCCCAACGTTGGTGCCCACACCTCACCGTT
GCCGTGACACACGACGACTGATTGCGAAGGGCCCGCGCTCATGAACCTCT
GATTTTTGCCGAGGCTCGGTTCTTACTTTGTCTACGGGGTACCTGACTAT
AGTTAGTGTAGACTCCTTGACTGGGTACCTGTTCTTTTAGGCCAAGTTCT
CCTCTCTTGGAGATTTTGAGGCTCAAGTTCTTACATAACTACCGCGTTTT
TTAAGTGAGGACCGGTTCTGTACGAGGAGCACCTGTTACACGTGAGGGAA
CCGGAGTTCCTTCGGAGGGTTGACCTCCCTTGGACAGACGTCCCTCTGCA
CCCCTCCGAAGCCAGGCGGAGTAGAGCGAATATTTTATTGGCGTTAGGGC
CACAGAATGACTTTGATTTTGTCGATACGAACTACTACGGAGGTGAGATT
TGTTGAATCACAATGTAGGCGCCACTTGGACTAGTCGGCGTAGAGATGCT
CGGTTTATGCCGTTGAGATCGCATGACGAGCTCTACGACCCGGGCGCCGT
CACGTCATTTTCCGTGGCGTCGTGTGCAACCATCTAGAAACGGAGCGCCG
CAGTCACGTGCCATCCGAAACCTGGGTCCTAGACTGTAGAGGGCTCCTCC
ATTTTTTGCTCCTGGCTCCGCACCATGACACCTAAACACCCTGCTCGCGT
GGCTGAGCAAGCGCCTCTCCTTCGAATGTCTCCCACAAATGGGTGGAGAC
GGGCGAGGCTATCGTGTTGGTACGAGTAGATGGCCAGTCTTGTTCAGGAC
GGCATGCCTGTGGGTGTAAATCACGGATCTGTCAATGATGAGATCATCGT
GTTGGTACGAGTAGATGGCCAGTCTTGTGCAGGACGGCATGCCTGTGGGT
GTACATCACGGATCTGTCAATGATGAGGTTATCGTTTTGCTACAAGTGGA
TGGCAAGTCCTGTGCAGGACGGCATGCCTGTGGGTGTAAAGCACGGATCT
GCCGATGGAGTCCAGAAGCACGCACGGACCCCGTAGACAAGACAGGGAAC
CAGATCAGTTGTAAAATACAACGCAGTTAGCGTTTTGCCCTTCGTCTTGC
GGGATCAGTCGGCGCG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:373418..378283-

>mRNA_E-siliculosus-1a_M_contig98.17717.1 ID=mRNA_E-siliculosus-1a_M_contig98.17717.1|Name=mRNA_E-siliculosus-1a_M_contig98.17717.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1626bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:373418..378283- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCGGTCTCGGATTGTGGGCGCCTGTCTCTCTGGCTGTGCGTACGGCGT
GCGCACCTCCTCCGCCTTTGTTTTCCCTCGATGCGGCCCAATTATGAGAC
CCGCGGGTGCCGCGGCCAATCACCAAGCTCGGGCCTACCGTCATGCGGCG
GCGCGAGGGAAAGAGGGCGGGGTGGGGTCTCTGCTGTCTTCTGCCGTGGA
GGACGAAGTGGAGGTTGGGCAGGATTCTGGGGAGATGTTTGACGTCTTCT
TGCCGCCGGAGGGTGGATCCCTCTCGGTGCTCAGCGAGCCCCCGCGGCCG
GCGGGCTTCCGCAAGGCCAGGGGTCTCGTGCACGCCGACGGCGACTGGCA
CAGGAGCGTGCACATATGGCTGCATAACTCCAAGATGCGGTCTCGGATTG
TGGGCGCCTGTCTCTCTGGCTGTGCGTACGGCGTGCGCACCTCCTCCGCC
TTTGTTTTCCCTCGATGCGGCCCAATTATGAGACCCGCGGGTGCCGCGGC
CAATCACCAAGCTCGGGCCTACCGTCATGCGGCGGCGCGAGGGAAAGAGG
GCGGGGTGGGGTCTCTGCTGTCTTCTGCCGTGGAGGACGAAGTGGAGGTT
GGGCAGGATTCTGGGGAGATGTTTGACGTCTTCTTGCCGCCGGAGGGTGG
ATCCCTCTCGGTGCTCAGCGAGCCCCCGCGGCCGGCGGGCTTCCGCAAGG
CCAGGGGTCTCGTGCACGCCGACGGCGACTGGCACAGGAGCGTGCACATA
TGGCTGCATAACTCCAAGGGCGAGCTGGTGCTGCAGAAGCGATCGTCCTC
GAAAGGGCGAGCTGGTGCTGCAGAAGCGATCGTCCTCGAAAGATACGTTT
CCGGGGATGTGGGACGTTAGCGTGGGCGGGCACTTCACGGCAGGGGAAGA
GAGCCTGGAGACGGCCATCAAGGAGACCAACGAGGAGCTGGGCTTGAGCT
GCGACGAGAGCAGCCTGCGCTTCGTGTGCACGGTGGCCACTACAGCCAAG
GGGACCACCGACATGCACGGCGACTTCGTGTGCAACGAGTACAAGATACG
TTTCCGGGGATGTGGGACGTTAGCGTGGGCGGGCACTTCACGGCAGGGGA
AGAGAGCCTGGAGACGGCCATCAAGGAGACCAACGAGGAGCTGGGCTTGA
GCTGCGACGAGAGCAGCCTGCGCTTCGTGTGCACGGTGGCCACTACAGCC
AAGGGGACCACCGACATGCACGGCGACTTCGTGTGCAACGAGTACAAGGA
CATCTACCTGCTTCGGCACGACGGACCAGTGCAGGACCTAAAGTTTTCGC
CCAGCGAGGTCGAAGACGTCAAGCTCGTGCCGATGCAGGCGCTCAAGGAA
GCTTACGAGGCCCAGGACATCTACCTGCTTCGGCACGACGGACCAGTGCA
GGACCTAAAGTTTTCGCCCAGCGAGGTCGAAGACGTCAAGCTCGTGCCGA
TGCAGGCGCTCAAGGAAGCTTACGAGGCCCAGGACCCAACGTACATCCCG
CGACCGGACTACTACGTCGAGCCCCTCTTCAAGGCGTTGGAAGAAGCCCT
CTAGGACCCAACGTACATCCCGCGACCGGACTACTACGTCGAGCCCCTCT
TCAAGGCGTTGGAAGAAGCCCTCTAG
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