mRNA_E-siliculosus-1a_M_contig98.17716.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig98.17716.1
Unique NamemRNA_E-siliculosus-1a_M_contig98.17716.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D7G0X3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0X3_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 1.300e-48
Identity = 95/113 (84.07%), Postives = 98/113 (86.73%), Query Frame = 1
Query:  259 HQPLPD-LFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMFDEKAVQK 594
            + P  D L  +  KVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEI R LGD L+D EI LLINAA KDRD TISMKEFVTFMFDEKAVQK
Sbjct:   52 YSPTKDQLKKLMDKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIARALGDSLTDAEIYLLINAAHKDRDATISMKEFVTFMFDEKAVQK 164          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D8LJU6_ECTSI (Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU6_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 6.160e-26
Identity = 59/110 (53.64%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
            G +  +Q L ++     KVD D +G ISF+EFV +M++G +ETD+ KEIN AF FFDK+GDG+V   ELAEIMRGLGDKLSD+EI+LL+  A       IS+ EF++FM+
Sbjct:   47 GYSPTNQQLKEMMA---KVDTDQSGGISFDEFVAMMQLGEVETDFTKEINEAFKFFDKDGDGEVTPAELAEIMRGLGDKLSDDEIELLVKVAXXXXXXVISIDEFISFMY 153          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6H5JMF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF0_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 4.010e-23
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  286 VFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKE 555
            +  KVD DG G ISFEEFV +M++G +ETD++KEIN AF FFDK+GDG+V R ELAEIMRGLGD L+D+EIDLL+          IS+ E
Sbjct:  121 IMAKVDTDGNGGISFEEFVAMMQLGEVETDFKKEINEAFKFFDKDGDGEVTRAELAEIMRGLGDTLTDDEIDLLVKVXXXXXXXVISIDE 210          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: D8LH46_ECTSI (Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH46_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.820e-20
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
            G +  ++ L D+     KVDLDG G I+F EFV +MR   ++TD++++I  AF FFD++G G +D +EL  IMR LG KL+D EI+LL+  AD D DG + + EF+  M+
Sbjct:   48 GYSPTNKQLEDMMA---KVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINEFLKIMY 154          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A835YUT0_9STRA (Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 3.980e-18
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLI 510
            G N   + L D+ +   KVD+DG G ISF+EFV++MR   +ETD+++EI  AF  FDK+G G +D++EL  IM+GLG  LSD+EI+LL+
Sbjct:   48 GYNPTDEQLHDMML---KVDIDGNGSISFDEFVIMMRKCEVETDFDREITEAFKVFDKDGSGSIDKEELTAIMKGLGANLSDQEIELLV 133          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6H5JMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.870e-18
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  280 FVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTF 567
            + V   VDLDG G I+F EFV +MR   ++TD++++I  AF FFD++G G +D +EL  IMR LG KL+D EI+LL+  AD D DG + + E   F
Sbjct:   30 WAVLLLVDLDGNGLINFAEFVTMMRKCKVDTDFDRQIREAFKFFDQDGSGAIDTKELGNIMRQLGAKLTDSEINLLVQEADVDGDGQVDINEASDF 125          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A6P4Z6I9_BRABE (Calmodulin n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Z6I9_BRABE)

HSP 1 Score: 86.3 bits (212), Expect = 4.910e-16
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  259 HQP-LPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFMF 573
            H+P L +L  +  ++   G+G I F EF+++M     E+D EKEI  AF  FDK+G+G +   EL  +M  LG+KL+DEE+D +I+ AD D DG I+ +EF T M+
Sbjct:   42 HKPELAELQDMINEMXXXGSGTIDFPEFLLVMSKKQQESDSEKEIREAFRVFDKDGNGFITASELRVVMANLGEKLTDEEVDEMIDEADSDGDGHINFEEFYTTMY 147          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A0D2F6B1_9EURO (Uncharacterized protein n=5 Tax=Herpotrichiellaceae TaxID=43219 RepID=A0A0D2F6B1_9EURO)

HSP 1 Score: 87.0 bits (214), Expect = 5.190e-16
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
            G N     L D+     +VD+D +G I FEEF+ +M       D+  E   AF+ FDK+G G +   EL ++M+ LG+ L+DEEID +I  ADKD++GTI  +EFV  +
Sbjct:   67 GQNPSDSELQDMI---NEVDVDRSGSIDFEEFLKMMSTTVKAQDFAHETRAAFNVFDKDGSGTISADELRQVMKSLGENLTDEEIDEMIREADKDKNGTIDYEEFVQLL 172          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A072P174_9EURO (Calmodulin n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072P174_9EURO)

HSP 1 Score: 85.9 bits (211), Expect = 8.930e-16
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  244 GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
            G N     L D+     +VD+D  G I F+EF+ +M      TD+  E   AF+ FDK+G G +   EL ++M+ LG+ L+DEEID +I  ADKDR+GTI    F  F+
Sbjct:    5 GQNPSESELQDMI---NEVDVDSNGSIDFDEFLKMMSQTVKATDFAHETRAAFNVFDKDGSGTISADELRQVMKSLGENLTDEEIDEMIREADKDRNGTIDCMWFYAFV 110          
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Match: A0A445FL35_GLYSO (Calmodulin-like protein 8 isoform B n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FL35_GLYSO)

HSP 1 Score: 84.7 bits (208), Expect = 9.590e-16
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  274 DLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEINGAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTISMKEFVTFM 570
            +L ++  +VD+DG G I F EF+ LM     ET+ E+E+  AF  FDK+ DG +   EL  +MR +G+K++DEE++ ++  AD D DG I  +EFV  M
Sbjct:   28 ELQIMMNEVDMDGNGTIEFGEFLNLMARKMKETEAEEELKEAFRVFDKDHDGYISPSELRSVMRTIGEKVTDEEVEQMVKEADLDGDGLIDYEEFVRMM 126          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig98.17716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X3_ECTSI1.300e-4884.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LJU6_ECTSI6.160e-2653.64Yellow cameleon 2.60 n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JMF0_9PHAE4.010e-2360.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH46_ECTSI2.820e-2045.45Calmodulin n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A835YUT0_9STRA3.980e-1850.56Yellow cameleon 2.60 n=1 Tax=Tribonema minus TaxID... [more]
A0A6H5JMU5_9PHAE6.870e-1847.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P4Z6I9_BRABE4.910e-1643.40Calmodulin n=2 Tax=Branchiostoma TaxID=7737 RepID=... [more]
A0A0D2F6B1_9EURO5.190e-1641.28Uncharacterized protein n=5 Tax=Herpotrichiellacea... [more]
A0A072P174_9EURO8.930e-1641.28Calmodulin n=1 Tax=Exophiala aquamarina CBS 119918... [more]
A0A445FL35_GLYSO9.590e-1642.42Calmodulin-like protein 8 isoform B n=1 Tax=Glycin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig98contigE-siliculosus-1a_M_contig98:368615..373256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size504
Model size2556
Exons3
Ec32 orthologEc-23_001960.1
Ec32 ortholog descriptionEF-hand domain pair
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.DTZ
EggNOG OGsCOG5126@1,KOG0027@2759
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG koko:K02183
Seed eggNOG ortholog2880.D7G0X3
Seed ortholog evalue2.6e-43
Seed ortholog score181.8
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig98.17716.1prot_E-siliculosus-1a_M_contig98.17716.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig98 368708..371297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936563.6527362-UTR-E-siliculosus-1a_M_contig98:368614..3687071622936563.6527362-UTR-E-siliculosus-1a_M_contig98:368614..368707Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 368615..368707 +
1696251132.8188224-UTR-E-siliculosus-1a_M_contig98:368614..3687071696251132.8188224-UTR-E-siliculosus-1a_M_contig98:368614..368707Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 368615..368707 +
1622936564.1560838-UTR-E-siliculosus-1a_M_contig98:371297..3732561622936564.1560838-UTR-E-siliculosus-1a_M_contig98:371297..373256Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 371298..373256 +
1696251132.8637836-UTR-E-siliculosus-1a_M_contig98:371297..3732561696251132.8637836-UTR-E-siliculosus-1a_M_contig98:371297..373256Ectocarpus siliculosus Ec864m_EcPH12_78m maleUTRE-siliculosus-1a_M_contig98 371298..373256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936563.6723144-CDS-E-siliculosus-1a_M_contig98:368707..3690461622936563.6723144-CDS-E-siliculosus-1a_M_contig98:368707..369046Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 368708..369046 +
1696251132.831935-CDS-E-siliculosus-1a_M_contig98:368707..3690461696251132.831935-CDS-E-siliculosus-1a_M_contig98:368707..369046Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 368708..369046 +
1622936563.6847255-CDS-E-siliculosus-1a_M_contig98:369786..3699081622936563.6847255-CDS-E-siliculosus-1a_M_contig98:369786..369908Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 369787..369908 +
1696251132.8423388-CDS-E-siliculosus-1a_M_contig98:369786..3699081696251132.8423388-CDS-E-siliculosus-1a_M_contig98:369786..369908Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 369787..369908 +
1622936564.1411161-CDS-E-siliculosus-1a_M_contig98:371254..3712971622936564.1411161-CDS-E-siliculosus-1a_M_contig98:371254..371297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 371255..371297 +
1696251132.852985-CDS-E-siliculosus-1a_M_contig98:371254..3712971696251132.852985-CDS-E-siliculosus-1a_M_contig98:371254..371297Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig98 371255..371297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig98.17716.1

>prot_E-siliculosus-1a_M_contig98.17716.1 ID=prot_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=168bp
MFSPLVFVHAGRIHVPRASGFVFFRSRWIWTAQNCSFNFWLLVFLFSCVQ
GVNIMHQPLPDLFVVFQKVDLDGTGDISFEEFVVLMRVGGMETDYEKEIN
GAFSFFDKNGDGQVDRQELAEIMRGLGDKLSDEEIDLLINAADKDRDGTI
SMKEFVTFMFDEKAVQK*
back to top

mRNA from alignment at E-siliculosus-1a_M_contig98:368615..373256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig98.17716.1 ID=mRNA_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=4642bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:368615..373256+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
CGAGTTTTGGGCAGGGCGTGTGTACCAACCGCTTTGATTTGTTTGTTCGT TTTCTTCTAAAGGGGGATTTGGGCAGCACATTTTGTTCATTCAATGTTTA GTCCTTTGGTTTTCGTGCATGCAGGGCGTATACATGTACCACGCGCTTCT GGATTTGTTTTTTTTCGTTCAAGGTGGATTTGGACGGCACAAAATTGTTC GTTCAATTTTTGGTTGTTAGTTTTTTTGTTTTCGTGCGTACAGGGCGTAA ATATTATGCACCAACCGCTTCCAGATTTGTTTGTTGTGTTCCAAAAGGTG GATCTGGACGGCACTGGAGACATTTCATTCGAGGAGTTCGTGGTGCTGAT GAGAGTGGGGGGCATGGAGACCGACTACGAGAAGGAGATCAACGGAGCTT TCTCCTTCTTTGACAAAAACGGCGACGGACAGGTATGTTTTACGACGTAG CAGCGAGGGTTTACCGCGGTTTGCGCGTACCACCACAATACAAGCGCAAG GTAGATTCGAATCCAGTTCGCGGCCGCCAGGTGGCGGTTGCGGTACAACA CGGTACGATAGTTTTGTGTTTTTTTTTGTTGTTAATTCCTGTTTTGGGGA CGCGATAATGCAAGTTCAACACGGTGCCAGGCTGTTCGTTCTCTCCTCCG CGTTTTTACGCCCGCCACCGACTTTCCTACGCCGAACATTCCCCACCGAC CATGGTCACATGGGGCGATGCATTCGCTGAAGACTTCATCCAGAACGCGC TTTGAGAACCCAAGGTTGGAGATAAGCTCGGTGCGCGCATATGCGTAGCA GCAACAGCAAGATTCTCGATCGTGCCCATGAAGGTTTGGGCCATTAGTCG GTGTTGTCCGTGAAAATCCATTCTCGAAGTCGACCTGGTACTGTACCTCT TGGTTCTTTCCTACACTTTTAAGGCAACGAGACCTTTGTCTCTGTCTCTC TTTTCTCTGTCCCTGTCTCTCCTCCTCTGCTTTTCTGTCTATCTGTGTCG GCCTCTCGCTGTGTCGGCCTCTCTCTGATTGTCCCCCTCTCTCCTTCTCT CTCTCTCTCTCTCTCTCTCTCTTCCGTTCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTCCCTCTCTTCCTCTTATTTTTTCTGTCTCTTGTCGGTTTGCC CGCCTTTCTTTTTTTTCTCCAGGTAGATCGACAAGAACTGGCGGAGATCA TGCGCGGGCTCGGAGACAAGCTGTCCGACGAAGAGATCGACCTCCTCATC AACGCCGCCGACAAGGACAGAGATGGCACAATCTCCATGAAAGAGTGAGT CCCCGCGGATTGGACACTAGGGAGGCCCGCGGAACCGCCCCCCGCTCCCC CTCCCTCCCCGCGCAATTCTCAAGAAAGACGGCGGTAAAAAAACGGCGTT GTTGTTTGCAGGACGACCTCGGAGATTTTAATTCGTTCTGTTTCTTGGGG AGGGGGAGGGGGGGGGGCGTATCATGTCCCCGGAGTCCCCGCAGATGATT ATCGGGTGCCGAGTACCCCAGACGAAGATCGCGTCTCTCGCGACAGATAG ATTGGTGGATGAATCGAAGCGACGGCGATATAGCCCTCACGGTCGCACCA CCCTGCGCTCCTCGTTGAAATACCTTTTCAACAACAACAAACGTGAGCAG ACACACCCATATCATTTTCTTTCCGCCCACCTAACTCTTTGTGACGTACT GCAGCGTTGGCATTCACTTCACACTAAGCTATTGTCTCGGCGATGTATGC TGTGTAGTAGGAAAGGGTTCGCGCTTGACGTCTCGTAGGTGACATGGCGT AAGATACCACACCCCCTATTTAGACCGATTTTCAAAGCTCGATTTCTCCA CAGCAGAAAGAGTGACGGTGACGTAATAGACGGCGTGGGCACGCGTCTCG TCGAGAGAGAGCTTTTCCGAGACGCATCGTTTCATTTATGCATCTTCTTC GCCGTGGAGGTAGTAGTCCGGCTTTGGAAATCGGCCCAGGTTGTGTGGCA TCTTGTGCCACCTACGTTCCAAGACTGGTTCCAGATTGGTAGATGTTTCT TTTGGTTTGTTGAGGTTCGCCGGGCTGTCCGAGTCAAAACATCGCCAGCT GTGTGAGCAGTTGAGCTTGGGAAACGTCACACCGCGGCTGTGAGTCGGTC CTGCAGCCTGCTTTCGTTTTCATCTTGCACCACCCCTTGACGACATTCCC GAGCTCTCATGAGCCAGCCTACCTTCCGGAGGGATCACTTGTAGGAGTGC ACGGGGCAGCAAATGTTTTCAACGCTCGCCGTCCCTGGGTTTTCCCCCTC TCCAGGGGATGCGCGGAGCACGTAGACTCTCTCGAACCGGCATTCCAGAT AGATAGAAATAGGTCGGGTCTGAGTGATAGTTTGTAATGTACGGCCGTAT TTTACCGGAATGAGGTTGTCCTGGTTTGTGTGGTAAGCCGATTCTTGGTG GAGGCGTACAAGGAAAAAGGCTGGCCGTCGCCCTTGCGCGAAAAATGTGG CCCTAGTCGTACAACGGGACCAAAAACAAGAGTCAACGCTGACTGACGTA GCTGCAGATTGGTTTCTTCTCCTCACCCACCCCCCCCCATTTGCGGTGTG TTGTTTTTCGATTTGTTTCACCCCTTCCGCCTTCCGTCAGGTTTGTCACC TTCATGTTCGACGAAAAAGCAGTCCAAAAGTGATTCTGGTGAAGACAGCG TCAGCGCGAAAAGAAGGAACCCGGAACGGGCCGAGAGTGTTCGGTCGGGG TATCTCGATCTTCCTGCGACGATGCATGGCAAGGGTGGAACCAAAGCAAG CCTGCAGAGCCGGCCGTTTTCTTCGTCGTTTTTTTTTGTGTGTCCTAATG CGTAAGTAGTCAATTGAGGGGAGGGAGGAGTGCGGTGCTTCTGCGGCGGT AGTGTCTTGGCTGTGATCGTTGAGGACACCGCTGCTGGGTGTCGCTGTTG TTGTAGATAAACTTTTTACTGGTACAGTACCACCACGATTTGATTTATAT GGCGCTGCTGTTGTTCATTTTCACGTTGGGGTGCCAGTCTACCTACGCAT GGCAACCTGCAGCCGGAGTAGACACAGGGCAACCGAGGAGCCCGTGTGCC ATCCGTAGCAGTGGTGCATATTTTGTGGTGCCCCGGGAATTGTAGCAAGG CGGGGGTTGGGAGACGGATGCTTTCCGATAGAACCGCTGAGGGCATGTAT GTATATGCCGTGAGGATTTCGACATTTTTACGGGGCACGGTTTCGAGTCT TTTCGATCTGTCGGCACAGCAGACGCAGTTCGTGTGGACGGAACAGCGCC AGCAGTTTGTAGATTGATGGATTGCGGGCCAAGCTCTCCTCGCCCATGTC TTGTGCCTTATTTCCTTTTAATGCGGGTCTTGTAGACGTTGGCGGCCTAC TTTGCTTTCTGGCACCTACTTTGCTTTCTAGCACTGTCACGCGGCGCTGG GTGTGAGCGAGTGGAGCATGGATGGGTACGCCAGGGCCCTATTTTTCCTG AAGAACAATAGCGCTTTAATGTGTATACACGCGTTTCGTTTGTTTTCGGT GGAGGCCAAGAGGCCAATATACATATTTCCGAGGTTACTGTAGGTTACAT GACGTTAGATACCACCCCCGGACCATTTTGCAAAGCCTGGTTGCTCCAAA GCAGGCGTTGCCGAAAATGGCGGGTTTGGAACCGTCTCGCCGAGAGTATT TCCGAAAACGTGCCACACGATAATTTTGTGCATCCTTTTCGTCGTGGAGA ATTGGATCTTTGAAAGTCGGTCCAGGGGGTGTGTTATCTTGTGTCAAATA CGGTATGTTTGCTTGCCGGCGCCGCACGGGTTTCGTTTCCTTTGCTTGGT ACAGTACAGCCACCGTGGCGGTGCTTTTGTGGCCGTTGAAAGGTTGACGT GATGTGCAGACTTTTAGATACTTGGGGGCGGTAAGGTAAGGTTTAGTTAA CCCGCGGAGGCATGTGACCTTTAGCATTGCCTTCGTTCTGCCGAAACGCG CGGGGATACGTCAAGGGCGAGAGAGAGAGAGAGAGCGTGTGTACTCTGAC ATTTTGGTGGAGCGTTGGATTTTTGAGATTTGTGCGCCGCGTGCGTGCGC CCCATGTAGGGGGAAGGCGGCGAGGGGAAGAAAAAAAAACGAGTGCAGAG GTCGTTTCTCTTCGCACGGTAAGATAGTTTATTGTTTTGGGATGTGGAGC GAGGTACCTGATTTTGGGAGAGGGCGGGGTACACCGGGATGTTTTGGATT TTTTCATGTGCTGGAATGACAGCGCTCTACAATATTGTGGTGTCATGTTA TCATGAGCATGAGCACGCCGGGAAAGTTTTTGGGGTGTGTTTGCGGTTCA GACGCTGCTGGAGCACCACTTCCGGCAAGAACATTCGGTGTGCGTGCGTG CTTGATACACAAGGATGGATGCGTGTGGTGGGGGCGCGATGTACAAGCCT GTGAGGCTCGAGATGCTCATCTCTCGGACGTACAGCAGTAGTCGTGTGGC GAACAAGCAGCGTGGTTCGTCTCCAATAAATTCCGCCGCCTTTTGTACGA TTCGCAGCAACGCGGGAGGATGGAAAGGACAGGTCCGTCGAAGGAAGTGG ACGAAAATATTTACCTTTAATTAATGAAAATACCTACGAGTC
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig98:368615..373256+

>mRNA_E-siliculosus-1a_M_contig98.17716.1 ID=mRNA_E-siliculosus-1a_M_contig98.17716.1|Name=mRNA_E-siliculosus-1a_M_contig98.17716.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1008bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig98:368615..373256+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTTTAGTCCTTTGGTTTTCGTGCATGCAGGGCGTATACATGTACCACG
CGCTTCTGGATTTGTTTTTTTTCGTTCAAGGTGGATTTGGACGGCACAAA
ATTGTTCGTTCAATTTTTGGTTGTTAGTTTTTTTGTTTTCGTGCGTACAG
GGCGTAAATATTATGCACCAACCGCTTCCAGATTTGTTTGTTGTGTTCCA
AAAGGTGGATCTGGACGGCACTGGAGACATTTCATTCGAGGAGTTCGTGG
TGCTGATGAGAGTGGGGGGCATGGAGACCGACTACGAGAAGGAGATCAAC
GGAGCTTTCTCCTTCTTTGACAAAAACGGCGACGGACAGATGTTTAGTCC
TTTGGTTTTCGTGCATGCAGGGCGTATACATGTACCACGCGCTTCTGGAT
TTGTTTTTTTTCGTTCAAGGTGGATTTGGACGGCACAAAATTGTTCGTTC
AATTTTTGGTTGTTAGTTTTTTTGTTTTCGTGCGTACAGGGCGTAAATAT
TATGCACCAACCGCTTCCAGATTTGTTTGTTGTGTTCCAAAAGGTGGATC
TGGACGGCACTGGAGACATTTCATTCGAGGAGTTCGTGGTGCTGATGAGA
GTGGGGGGCATGGAGACCGACTACGAGAAGGAGATCAACGGAGCTTTCTC
CTTCTTTGACAAAAACGGCGACGGACAGGTAGATCGACAAGAACTGGCGG
AGATCATGCGCGGGCTCGGAGACAAGCTGTCCGACGAAGAGATCGACCTC
CTCATCAACGCCGCCGACAAGGACAGAGATGGCACAATCTCCATGAAAGA
GTAGATCGACAAGAACTGGCGGAGATCATGCGCGGGCTCGGAGACAAGCT
GTCCGACGAAGAGATCGACCTCCTCATCAACGCCGCCGACAAGGACAGAG
ATGGCACAATCTCCATGAAAGAGTTTGTCACCTTCATGTTCGACGAAAAA
GCAGTCCAAAAGTGAGTTTGTCACCTTCATGTTCGACGAAAAAGCAGTCC
AAAAGTGA
back to top